Wall clock time and date at job start Mon Mar 30 2020 01:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36479 * 126.98074 * 2 1 4 4 C 1.48449 * 126.90523 * 359.94910 * 3 2 1 5 5 C 1.39316 * 120.10516 * 40.96694 * 4 3 2 6 6 C 1.38007 * 119.89184 * 179.72553 * 5 4 3 7 7 C 1.38434 * 120.10460 * 0.54873 * 6 5 4 8 8 Cl 1.73605 * 119.89223 * 179.74403 * 7 6 5 9 9 C 1.38429 * 120.21227 * 359.72513 * 7 6 5 10 10 C 1.38005 * 120.10486 * 359.97438 * 9 7 6 11 11 N 1.34506 * 106.19273 * 179.97438 * 3 2 1 12 12 N 1.28620 * 108.78414 * 359.73944 * 11 3 2 13 13 N 1.28652 * 110.48138 * 0.44262 * 12 11 3 14 14 C 1.46502 * 125.75161 * 179.82252 * 13 12 11 15 15 C 1.50703 * 109.46893 * 269.69476 * 14 13 12 16 16 H 1.08001 * 120.00197 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99771 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00398 * 359.71481 * 17 15 14 19 19 Si 1.86804 * 119.99550 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46814 * 179.71990 * 19 17 15 21 21 H 1.48496 * 109.47054 * 299.71717 * 19 17 15 22 22 H 1.48500 * 109.47349 * 59.72471 * 19 17 15 23 23 H 1.09005 * 109.47236 * 275.07360 * 1 2 3 24 24 H 1.09000 * 109.47083 * 35.07293 * 1 2 3 25 25 H 1.09002 * 109.47479 * 155.07307 * 1 2 3 26 26 H 1.07992 * 120.05447 * 359.97438 * 5 4 3 27 27 H 1.07997 * 119.95029 * 180.27137 * 6 5 4 28 28 H 1.07999 * 119.94581 * 179.97438 * 9 7 6 29 29 H 1.08005 * 120.05205 * 180.02562 * 10 9 7 30 30 H 1.08998 * 109.47240 * 149.69123 * 14 13 12 31 31 H 1.09003 * 109.46912 * 29.69106 * 14 13 12 32 32 H 0.96997 * 119.99633 * 0.28768 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3280 1.0902 0.0000 4 6 1.9160 2.5164 -0.0011 5 6 0.8471 2.9356 0.7881 6 6 0.4714 4.2635 0.7881 7 6 1.1475 5.1764 -0.0030 8 17 0.6660 6.8443 -0.0039 9 6 2.2065 4.7636 -0.7932 10 6 2.5935 3.4389 -0.7952 11 7 3.5855 0.6129 0.0006 12 7 3.5405 -0.6725 0.0064 13 7 2.3203 -1.0803 0.0005 14 6 1.8853 -2.4793 0.0007 15 6 1.7368 -2.9593 -1.4201 16 1 1.9451 -2.2892 -2.2411 17 6 1.3339 -4.2536 -1.6718 18 7 1.0846 -5.0710 -0.6722 19 14 1.1490 -4.8483 -3.4330 20 1 0.7142 -6.2682 -3.4328 21 1 0.1336 -4.0198 -4.1312 22 1 2.4523 -4.7300 -4.1348 23 1 -0.3634 0.0909 1.0237 24 1 -0.3633 0.8411 -0.5905 25 1 -0.3634 -0.9319 -0.4331 26 1 0.3161 2.2233 1.4020 27 1 -0.3542 4.5903 1.4029 28 1 2.7307 5.4794 -1.4091 29 1 3.4202 3.1179 -1.4117 30 1 0.9275 -2.5618 0.5142 31 1 2.6272 -3.0903 0.5150 32 1 1.1802 -4.7620 0.2423 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899888159.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:12 Heat of formation + Delta-G solvation = 76.728196 kcal Electronic energy + Delta-G solvation = -18154.430800 eV Core-core repulsion = 15141.475369 eV Total energy + Delta-G solvation = -3012.955431 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.068 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.21931 -40.17071 -37.47591 -36.69019 -34.57398 -34.39052 -32.11287 -31.23066 -29.35886 -28.21116 -25.69363 -24.55180 -23.74989 -22.00847 -21.76345 -19.50592 -18.47826 -17.78506 -17.17393 -16.60056 -16.15766 -15.70511 -15.18477 -15.06376 -14.91733 -14.53215 -14.37133 -14.31671 -13.90791 -13.60816 -13.38357 -12.85842 -12.65360 -12.64079 -12.57792 -12.44241 -11.97493 -11.92993 -11.77682 -11.69191 -10.77141 -10.73462 -10.33713 -10.05234 -9.29732 -8.90692 -6.70015 -0.12718 0.30706 0.69369 1.13206 1.48271 1.50812 1.55743 1.58200 1.78494 2.43684 2.63854 2.92280 3.22935 3.65471 3.77535 3.87294 3.93352 4.05361 4.30064 4.36718 4.40880 4.59142 4.62251 4.71104 4.78608 4.97403 5.00804 5.07708 5.20806 5.34224 5.36337 5.50834 5.57121 5.73387 5.93923 6.25565 7.05821 7.50491 8.49314 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.033623 B = 0.003605 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.554873 B = 7765.977172 C = 7889.390666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.002 3.998 3 C -0.014 4.014 4 C -0.003 4.003 5 C -0.090 4.090 6 C -0.100 4.100 7 C -0.038 4.038 8 Cl -0.065 7.065 9 C -0.105 4.105 10 C -0.094 4.094 11 N -0.294 5.294 12 N -0.131 5.131 13 N -0.260 5.260 14 C 0.241 3.759 15 C -0.634 4.634 16 H 0.045 0.955 17 C -0.006 4.006 18 N -0.913 5.913 19 Si 1.117 2.883 20 H -0.274 1.274 21 H -0.265 1.265 22 H -0.279 1.279 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.069 0.931 26 H 0.150 0.850 27 H 0.163 0.837 28 H 0.153 0.847 29 H 0.125 0.875 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 19.101 1.927 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C -0.154 4.154 4 C -0.005 4.005 5 C -0.109 4.109 6 C -0.119 4.119 7 C -0.065 4.065 8 Cl -0.036 7.036 9 C -0.124 4.124 10 C -0.113 4.113 11 N -0.158 5.158 12 N -0.109 5.109 13 N -0.052 5.052 14 C 0.122 3.878 15 C -0.672 4.672 16 H 0.063 0.937 17 C -0.207 4.207 18 N -0.548 5.548 19 Si 0.937 3.063 20 H -0.199 1.199 21 H -0.189 1.189 22 H -0.204 1.204 23 H 0.125 0.875 24 H 0.124 0.876 25 H 0.088 0.912 26 H 0.168 0.832 27 H 0.181 0.819 28 H 0.171 0.829 29 H 0.143 0.857 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.967 17.420 1.048 18.144 hybrid contribution -0.068 1.134 1.030 1.534 sum -5.035 18.554 2.078 19.337 Atomic orbital electron populations 1.20542 0.83390 1.04795 1.05015 1.22811 0.98083 0.85600 1.06832 1.20507 0.89098 0.94506 1.11269 1.17806 0.96965 0.87313 0.98398 1.21292 0.95565 0.96185 0.97829 1.21195 1.00535 0.91338 0.98799 1.21125 0.98379 0.86149 1.00878 1.98372 1.91174 1.16253 1.97781 1.21107 0.96397 0.95608 0.99281 1.21174 0.99391 0.92426 0.98329 1.75142 1.21757 1.00872 1.17996 1.78140 1.03558 1.06716 1.22451 1.47582 1.04338 1.10146 1.43139 1.19859 0.96394 0.71986 0.99596 1.22164 1.53100 1.01063 0.90841 0.93670 1.27209 0.91674 0.92401 1.09447 1.70945 1.45304 1.38185 1.00316 0.82912 0.77692 0.76554 0.69124 1.19872 1.18944 1.20447 0.87477 0.87581 0.91225 0.83195 0.81939 0.82941 0.85667 0.91772 0.94532 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.18 8.61 71.24 0.61 -1.56 16 2 C 0.00 0.07 6.99 41.63 0.29 0.36 16 3 C -0.01 -0.54 6.71 41.05 0.28 -0.26 16 4 C 0.00 -0.07 5.75 -20.04 -0.12 -0.19 16 5 C -0.09 -1.92 8.83 22.47 0.20 -1.72 16 6 C -0.10 -1.77 9.81 22.26 0.22 -1.56 16 7 C -0.04 -0.73 6.32 22.36 0.14 -0.59 16 8 Cl -0.06 -1.09 28.95 -2.72 -0.08 -1.16 16 9 C -0.11 -2.17 9.81 22.26 0.22 -1.95 16 10 C -0.09 -2.45 9.78 22.47 0.22 -2.23 16 11 N -0.29 -12.96 12.44 -49.31 -0.61 -13.57 16 12 N -0.13 -6.34 13.14 37.02 0.49 -5.85 16 13 N -0.26 -11.86 3.32 -337.26 -1.12 -12.98 16 14 C 0.24 11.63 5.05 85.63 0.43 12.07 16 15 C -0.63 -33.69 9.39 25.60 0.24 -33.45 16 16 H 0.04 2.51 7.81 -2.91 -0.02 2.49 16 17 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 18 N -0.91 -50.32 13.65 21.45 0.29 -50.03 16 19 Si 1.12 46.65 29.90 68.60 2.05 48.70 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 21 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 22 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 23 H 0.11 2.24 7.87 -2.38 -0.02 2.22 16 24 H 0.11 2.39 7.81 -2.39 -0.02 2.37 16 25 H 0.07 2.17 7.57 -2.39 -0.02 2.15 16 26 H 0.15 2.68 7.01 -2.91 -0.02 2.66 16 27 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 28 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 29 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 30 H 0.06 2.92 7.47 -2.39 -0.02 2.90 16 31 H 0.04 1.88 8.00 -2.39 -0.02 1.86 16 32 H 0.26 14.34 7.22 -92.71 -0.67 13.67 16 Total: -1.00 -63.79 300.16 5.46 -58.33 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.25 Total: 7.46 kcal Atomic # 6 Polarization: -34.10 SS G_CDS: 3.20 Total: -30.90 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -0.95 Total: -82.42 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.05 Total: 48.70 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.16 kcal Total: -63.79 5.46 -58.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899888159.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.053 kcal (2) G-P(sol) polarization free energy of solvation -63.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds