Wall clock time and date at job start Mon Mar 30 2020 02:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42098 * 110.54476 * 2 1 4 4 O 1.42099 * 110.54112 * 223.24861 * 2 1 3 5 5 N 1.65601 * 104.45096 * 111.62447 * 2 1 3 6 6 C 1.46925 * 120.63241 * 266.92119 * 5 2 1 7 7 C 1.53196 * 108.77284 * 126.36918 * 6 5 2 8 8 C 1.53040 * 109.31409 * 54.63635 * 7 6 5 9 9 C 1.53040 * 109.53612 * 298.63445 * 8 7 6 10 10 C 1.46931 * 120.62638 * 86.89683 * 5 2 1 11 11 H 1.09003 * 109.58263 * 113.84634 * 10 5 2 12 12 C 1.50693 * 109.70945 * 353.49185 * 10 5 2 13 13 O 1.21214 * 119.99805 * 307.51215 * 12 10 5 14 14 O 1.34312 * 120.00246 * 127.50824 * 12 10 5 15 15 C 1.34922 * 116.99753 * 180.02562 * 14 12 10 16 16 H 1.08004 * 120.00443 * 359.97438 * 15 14 12 17 17 C 1.38749 * 119.99679 * 179.97438 * 15 14 12 18 18 N 1.31442 * 120.00352 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99788 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47164 * 60.00312 * 19 17 15 21 21 H 1.48504 * 109.47128 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47565 * 300.00128 * 19 17 15 23 23 H 1.09004 * 109.46868 * 308.36974 * 1 2 3 24 24 H 1.08996 * 109.47523 * 68.37538 * 1 2 3 25 25 H 1.09001 * 109.47559 * 188.37853 * 1 2 3 26 26 H 1.08994 * 109.58448 * 246.15361 * 6 5 2 27 27 H 1.08997 * 109.58443 * 6.58329 * 6 5 2 28 28 H 1.09000 * 109.49554 * 294.68247 * 7 6 5 29 29 H 1.09001 * 109.49410 * 174.58605 * 7 6 5 30 30 H 1.08992 * 109.45745 * 178.60837 * 8 7 6 31 31 H 1.09004 * 109.45984 * 58.65299 * 8 7 6 32 32 H 1.09008 * 109.49362 * 181.31473 * 9 8 7 33 33 H 1.08999 * 109.49672 * 301.40729 * 9 8 7 34 34 H 0.96999 * 120.00276 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2272 -0.5910 1.4908 6 6 2.4798 0.3217 2.6141 7 6 1.5971 -0.0941 3.7952 8 6 1.8438 -1.5699 4.1166 9 6 1.4666 -2.4273 2.9063 10 6 2.3477 -2.0380 1.7152 11 1 3.3862 -2.2889 1.9315 12 6 1.8936 -2.7825 0.4862 13 8 0.8091 -2.5447 -0.0002 14 8 2.6906 -3.7094 -0.0703 15 6 2.2240 -4.3385 -1.1689 16 1 1.2494 -4.0884 -1.5615 17 6 2.9962 -5.3068 -1.7943 18 7 4.1821 -5.6116 -1.3163 19 14 2.3500 -6.1783 -3.3150 20 1 2.0901 -5.1810 -4.3841 21 1 3.3579 -7.1608 -3.7883 22 1 1.0881 -6.8863 -2.9811 23 1 -0.3633 0.6379 0.8058 24 1 -0.3634 0.3787 -0.9553 25 1 -0.3634 -1.0167 0.1497 26 1 3.5289 0.2631 2.9037 27 1 2.2367 1.3420 2.3177 28 1 0.5487 0.0512 3.5346 29 1 1.8439 0.5140 4.6655 30 1 1.2352 -1.8618 4.9724 31 1 2.8975 -1.7189 4.3529 32 1 1.6205 -3.4799 3.1441 33 1 0.4194 -2.2601 2.6543 34 1 4.7218 -6.2888 -1.7533 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919246710.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:58 Heat of formation + Delta-G solvation = -136.809293 kcal Electronic energy + Delta-G solvation = -21343.671876 eV Core-core repulsion = 17983.898801 eV Total energy + Delta-G solvation = -3359.773075 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.63999 -37.86288 -36.65958 -35.45216 -34.98385 -32.35448 -32.10761 -31.21081 -28.95802 -25.91901 -24.45295 -23.60314 -20.64307 -20.39743 -18.31566 -17.78378 -17.49406 -16.41026 -15.93137 -15.70706 -14.79454 -14.56039 -14.42035 -14.40175 -14.12062 -13.76454 -13.46263 -12.89419 -12.84755 -12.54334 -12.24552 -11.73568 -11.61711 -11.52363 -11.45147 -11.22948 -11.14479 -10.91556 -10.82350 -10.58522 -10.41328 -10.38401 -10.16411 -9.74960 -8.98493 -8.80863 -8.50195 -6.34322 -3.97556 0.72250 2.79300 3.16850 3.23636 3.27764 3.49394 3.88943 4.30885 4.37554 4.58333 4.78243 4.88628 5.01300 5.14399 5.18960 5.30813 5.36106 5.44869 5.52825 5.61134 5.77224 5.86438 6.00500 6.00843 6.08368 6.19221 6.32673 6.39367 6.57473 6.83338 7.48832 8.04213 8.75341 9.14367 9.86283 10.83639 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.024741 B = 0.006944 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.469534 B = 4031.049373 C = 4612.740474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.667 4.667 2 S 2.604 3.396 3 O -0.977 6.977 4 O -0.920 6.920 5 N -0.989 5.989 6 C 0.123 3.877 7 C -0.137 4.137 8 C -0.114 4.114 9 C -0.122 4.122 10 C 0.174 3.826 11 H 0.099 0.901 12 C 0.402 3.598 13 O -0.571 6.571 14 O -0.189 6.189 15 C -0.361 4.361 16 H 0.097 0.903 17 C 0.039 3.961 18 N -0.865 5.865 19 Si 0.944 3.056 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.270 1.270 23 H 0.109 0.891 24 H 0.115 0.885 25 H 0.162 0.838 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 9.306 10.210 14.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.817 4.817 2 S 2.699 3.301 3 O -0.968 6.968 4 O -0.910 6.910 5 N -0.827 5.827 6 C -0.002 4.002 7 C -0.176 4.176 8 C -0.152 4.152 9 C -0.161 4.161 10 C 0.066 3.934 11 H 0.117 0.883 12 C 0.249 3.751 13 O -0.473 6.473 14 O -0.093 6.093 15 C -0.437 4.437 16 H 0.115 0.885 17 C -0.165 4.165 18 N -0.502 5.502 19 Si 0.769 3.231 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.196 1.196 23 H 0.128 0.872 24 H 0.134 0.866 25 H 0.180 0.820 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.786 9.457 9.334 14.123 hybrid contribution -0.906 -0.483 -0.451 1.121 sum -5.692 8.974 8.884 13.851 Atomic orbital electron populations 1.30737 1.27777 1.13875 1.09307 1.05088 0.78226 0.73454 0.73374 1.93532 1.78618 1.38604 1.86018 1.93730 1.77326 1.59206 1.60779 1.57732 1.84847 1.11899 1.28259 1.21415 1.00188 0.92588 0.86043 1.21968 1.00472 0.97047 0.98106 1.21467 1.02012 0.94439 0.97277 1.21846 1.00233 1.00546 0.93516 1.20215 1.01851 0.78638 0.92648 0.88266 1.22503 0.84506 0.82820 0.85234 1.90363 1.24226 1.67868 1.64808 1.83784 1.43066 1.43786 1.38698 1.21167 1.03803 1.16849 1.01888 0.88508 1.25345 0.95334 0.96708 0.99083 1.69986 1.09651 1.30785 1.39794 0.85738 0.78290 0.78752 0.80325 1.19452 1.20446 1.19568 0.87203 0.86650 0.82011 0.90853 0.89037 0.91511 0.90783 0.91497 0.91415 0.90056 0.90584 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -9.96 10.53 101.05 1.06 -8.90 16 2 S 2.60 47.74 5.38 -107.50 -0.58 47.16 16 3 O -0.98 -18.46 16.62 -57.54 -0.96 -19.41 16 4 O -0.92 -22.26 14.00 -68.05 -0.95 -23.21 16 5 N -0.99 -15.94 3.22 -107.70 -0.35 -16.29 16 6 C 0.12 1.47 6.33 -3.71 -0.02 1.45 16 7 C -0.14 -1.31 6.08 -26.61 -0.16 -1.47 16 8 C -0.11 -1.19 5.88 -26.69 -0.16 -1.34 16 9 C -0.12 -1.72 5.35 -26.61 -0.14 -1.86 16 10 C 0.17 3.12 3.31 -68.75 -0.23 2.89 16 11 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 12 C 0.40 9.66 4.17 36.00 0.15 9.81 16 13 O -0.57 -13.91 10.87 -26.88 -0.29 -14.20 16 14 O -0.19 -5.50 9.75 -23.36 -0.23 -5.72 16 15 C -0.36 -10.85 9.64 30.92 0.30 -10.55 16 16 H 0.10 2.90 6.86 -52.48 -0.36 2.54 16 17 C 0.04 1.13 5.49 -17.53 -0.10 1.03 16 18 N -0.87 -25.84 13.67 55.48 0.76 -25.09 16 19 Si 0.94 21.88 29.55 -169.99 -5.02 16.86 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H 0.11 1.26 8.14 -51.92 -0.42 0.84 16 24 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 25 H 0.16 2.76 5.44 -51.92 -0.28 2.47 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.09 1.02 7.00 -51.93 -0.36 0.66 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 33 H 0.08 1.08 8.11 -51.93 -0.42 0.65 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 290.15 15.07 4.37 4.37 Total: -1.00 -36.27 290.15 -6.91 -43.18 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -4.37 Total: 1.29 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 0.70 Total: -8.95 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.41 Total: -41.37 kcal Atomic # 8 Polarization: -60.12 SS G_CDS: -2.43 Total: -62.55 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 47.74 SS G_CDS: -0.58 Total: 47.16 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -36.27 -6.91 -43.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919246710.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.627 kcal (2) G-P(sol) polarization free energy of solvation -36.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds