Wall clock time and date at job start Mon Mar 30 2020 02:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42098 * 110.54476 * 2 1 4 4 O 1.42099 * 110.54112 * 223.24861 * 2 1 3 5 5 N 1.65601 * 104.45096 * 111.62447 * 2 1 3 6 6 C 1.46925 * 120.63241 * 266.92119 * 5 2 1 7 7 C 1.53196 * 108.77284 * 126.36918 * 6 5 2 8 8 C 1.53040 * 109.31409 * 54.63635 * 7 6 5 9 9 C 1.53040 * 109.53612 * 298.63445 * 8 7 6 10 10 C 1.46931 * 120.62638 * 86.89683 * 5 2 1 11 11 H 1.09003 * 109.58263 * 113.84634 * 10 5 2 12 12 C 1.50693 * 109.70945 * 353.49185 * 10 5 2 13 13 O 1.21214 * 119.99805 * 307.51215 * 12 10 5 14 14 O 1.34312 * 120.00246 * 127.50824 * 12 10 5 15 15 C 1.34922 * 116.99753 * 180.02562 * 14 12 10 16 16 H 1.08004 * 120.00443 * 359.97438 * 15 14 12 17 17 C 1.38749 * 119.99679 * 179.97438 * 15 14 12 18 18 N 1.31442 * 120.00352 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99788 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47164 * 60.00312 * 19 17 15 21 21 H 1.48504 * 109.47128 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47565 * 300.00128 * 19 17 15 23 23 H 1.09004 * 109.46868 * 308.36974 * 1 2 3 24 24 H 1.08996 * 109.47523 * 68.37538 * 1 2 3 25 25 H 1.09001 * 109.47559 * 188.37853 * 1 2 3 26 26 H 1.08994 * 109.58448 * 246.15361 * 6 5 2 27 27 H 1.08997 * 109.58443 * 6.58329 * 6 5 2 28 28 H 1.09000 * 109.49554 * 294.68247 * 7 6 5 29 29 H 1.09001 * 109.49410 * 174.58605 * 7 6 5 30 30 H 1.08992 * 109.45745 * 178.60837 * 8 7 6 31 31 H 1.09004 * 109.45984 * 58.65299 * 8 7 6 32 32 H 1.09008 * 109.49362 * 181.31473 * 9 8 7 33 33 H 1.08999 * 109.49672 * 301.40729 * 9 8 7 34 34 H 0.96999 * 120.00276 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2272 -0.5910 1.4908 6 6 2.4798 0.3217 2.6141 7 6 1.5971 -0.0941 3.7952 8 6 1.8438 -1.5699 4.1166 9 6 1.4666 -2.4273 2.9063 10 6 2.3477 -2.0380 1.7152 11 1 3.3862 -2.2889 1.9315 12 6 1.8936 -2.7825 0.4862 13 8 0.8091 -2.5447 -0.0002 14 8 2.6906 -3.7094 -0.0703 15 6 2.2240 -4.3385 -1.1689 16 1 1.2494 -4.0884 -1.5615 17 6 2.9962 -5.3068 -1.7943 18 7 4.1821 -5.6116 -1.3163 19 14 2.3500 -6.1783 -3.3150 20 1 2.0901 -5.1810 -4.3841 21 1 3.3579 -7.1608 -3.7883 22 1 1.0881 -6.8863 -2.9811 23 1 -0.3633 0.6379 0.8058 24 1 -0.3634 0.3787 -0.9553 25 1 -0.3634 -1.0167 0.1497 26 1 3.5289 0.2631 2.9037 27 1 2.2367 1.3420 2.3177 28 1 0.5487 0.0512 3.5346 29 1 1.8439 0.5140 4.6655 30 1 1.2352 -1.8618 4.9724 31 1 2.8975 -1.7189 4.3529 32 1 1.6205 -3.4799 3.1441 33 1 0.4194 -2.2601 2.6543 34 1 4.7218 -6.2888 -1.7533 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919246710.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:58 Heat of formation + Delta-G solvation = -164.232610 kcal Electronic energy + Delta-G solvation = -21344.861040 eV Core-core repulsion = 17983.898801 eV Total energy + Delta-G solvation = -3360.962240 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.39955 -39.22982 -38.30683 -37.05092 -36.90022 -34.25434 -33.44296 -32.43029 -30.24488 -27.81695 -25.93115 -24.74534 -22.33156 -21.46362 -19.91875 -19.73099 -19.08573 -18.13173 -17.49007 -17.17731 -16.53544 -16.23819 -16.09688 -15.59636 -15.49280 -14.96459 -14.61875 -14.49724 -14.05219 -13.86053 -13.82119 -13.45443 -13.20149 -13.08331 -12.98699 -12.81688 -12.45027 -12.25526 -12.16489 -12.08874 -11.94662 -11.82196 -11.67902 -11.36863 -10.82071 -10.64607 -10.02906 -8.48941 -6.23942 -0.69553 1.22992 1.32798 1.46060 1.51119 1.72908 2.10881 2.59005 2.90277 3.04511 3.18980 3.70238 3.88260 4.01368 4.11840 4.14323 4.24693 4.28876 4.37119 4.62017 4.70212 4.75201 4.92128 4.98494 5.06454 5.16178 5.22838 5.25614 5.26727 5.51006 5.58970 5.91287 6.74859 6.96775 7.78847 8.72332 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.024741 B = 0.006944 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.469534 B = 4031.049373 C = 4612.740474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.596 3.404 3 O -0.988 6.988 4 O -0.991 6.991 5 N -0.988 5.988 6 C 0.110 3.890 7 C -0.131 4.131 8 C -0.109 4.109 9 C -0.118 4.118 10 C 0.180 3.820 11 H 0.096 0.904 12 C 0.403 3.597 13 O -0.575 6.575 14 O -0.232 6.232 15 C -0.397 4.397 16 H 0.084 0.916 17 C -0.013 4.013 18 N -0.908 5.908 19 Si 1.015 2.985 20 H -0.268 1.268 21 H -0.261 1.261 22 H -0.255 1.255 23 H 0.154 0.846 24 H 0.132 0.868 25 H 0.145 0.855 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.882 10.418 11.903 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.799 4.799 2 S 2.695 3.305 3 O -0.979 6.979 4 O -0.981 6.981 5 N -0.828 5.828 6 C -0.013 4.013 7 C -0.170 4.170 8 C -0.146 4.146 9 C -0.157 4.157 10 C 0.072 3.928 11 H 0.114 0.886 12 C 0.251 3.749 13 O -0.476 6.476 14 O -0.138 6.138 15 C -0.473 4.473 16 H 0.102 0.898 17 C -0.212 4.212 18 N -0.546 5.546 19 Si 0.834 3.166 20 H -0.193 1.193 21 H -0.184 1.184 22 H -0.179 1.179 23 H 0.173 0.827 24 H 0.151 0.849 25 H 0.163 0.837 26 H 0.100 0.900 27 H 0.121 0.879 28 H 0.093 0.907 29 H 0.127 0.873 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.296 10.602 11.058 16.562 hybrid contribution -0.518 -0.628 -0.859 1.183 sum -6.814 9.974 10.199 15.809 Atomic orbital electron populations 1.30476 1.23261 1.13919 1.12260 1.04947 0.79905 0.72425 0.73176 1.93505 1.79807 1.38354 1.86198 1.93656 1.79761 1.61157 1.63566 1.57534 1.85362 1.11240 1.28651 1.21852 1.01676 0.92181 0.85607 1.21992 1.00334 0.96676 0.97959 1.21491 1.02930 0.94281 0.95901 1.21907 0.99216 1.01346 0.93252 1.20289 1.02540 0.79120 0.90854 0.88583 1.23800 0.83951 0.81222 0.85886 1.90342 1.24514 1.67379 1.65320 1.83802 1.44904 1.45871 1.39269 1.21330 1.04018 1.18450 1.03480 0.89837 1.26543 0.95441 0.96931 1.02258 1.70081 1.11012 1.31862 1.41680 0.84735 0.78627 0.77683 0.75589 1.19339 1.18442 1.17897 0.82730 0.84917 0.83709 0.90004 0.87917 0.90655 0.87340 0.88824 0.90839 0.90401 0.90559 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -17.89 10.53 113.37 1.19 -16.70 16 2 S 2.60 94.72 5.38 -56.49 -0.30 94.41 16 3 O -0.99 -36.58 16.62 -127.65 -2.12 -38.70 16 4 O -0.99 -50.10 14.00 -117.60 -1.65 -51.74 16 5 N -0.99 -30.81 3.22 -494.66 -1.59 -32.40 16 6 C 0.11 2.31 6.33 86.36 0.55 2.86 16 7 C -0.13 -1.91 6.08 30.67 0.19 -1.72 16 8 C -0.11 -1.85 5.88 30.62 0.18 -1.67 16 9 C -0.12 -3.12 5.35 30.67 0.16 -2.95 16 10 C 0.18 6.46 3.31 44.22 0.15 6.61 16 11 H 0.10 3.47 8.14 -2.39 -0.02 3.46 16 12 C 0.40 20.10 4.17 71.23 0.30 20.39 16 13 O -0.58 -28.83 10.87 28.24 0.31 -28.52 16 14 O -0.23 -14.22 9.75 17.36 0.17 -14.05 16 15 C -0.40 -25.04 9.64 67.94 0.66 -24.38 16 16 H 0.08 5.28 6.86 -2.91 -0.02 5.26 16 17 C -0.01 -0.76 5.49 84.87 0.47 -0.30 16 18 N -0.91 -56.19 13.67 21.62 0.30 -55.89 16 19 Si 1.01 45.66 29.55 68.60 2.03 47.68 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 22 H -0.25 -10.71 7.11 99.48 0.71 -10.00 16 23 H 0.15 2.89 8.14 -2.39 -0.02 2.87 16 24 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 25 H 0.14 4.74 5.44 -2.39 -0.01 4.72 16 26 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.10 1.96 7.00 -2.39 -0.02 1.95 16 28 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 29 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.08 2.01 8.11 -2.39 -0.02 1.99 16 34 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -84.23 290.15 2.08 -82.15 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.11 Total: 14.91 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 3.84 Total: -17.85 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -1.30 Total: -88.29 kcal Atomic # 8 Polarization: -129.73 SS G_CDS: -3.29 Total: -133.02 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 16 Polarization: 94.72 SS G_CDS: -0.30 Total: 94.41 kcal Total: -84.23 2.08 -82.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919246710.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.080 kcal (2) G-P(sol) polarization free energy of solvation -84.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds