Wall clock time and date at job start Mon Mar 30 2020 01:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47104 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47457 * 300.00415 * 3 2 1 6 6 H 1.48496 * 109.46986 * 60.00777 * 3 2 1 7 7 C 1.37881 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99939 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00021 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46613 * 60.00696 * 9 7 2 11 11 N 1.46496 * 109.47016 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00037 * 205.00057 * 11 9 7 13 13 O 1.21282 * 120.00088 * 0.02562 * 12 11 9 14 14 C 1.50706 * 119.99882 * 180.02562 * 12 11 9 15 15 C 1.50700 * 109.46934 * 180.02562 * 14 12 11 16 16 N 1.30503 * 125.65068 * 305.02627 * 15 14 12 17 17 C 1.34127 * 109.25644 * 180.02562 * 16 15 14 18 18 C 1.34666 * 108.02125 * 359.97438 * 17 16 15 19 19 N 1.35047 * 125.65189 * 124.71737 * 15 14 12 20 20 H 0.97001 * 126.39127 * 0.02562 * 19 15 14 21 21 C 1.52997 * 109.47466 * 300.00592 * 9 7 2 22 22 F 1.39905 * 109.47157 * 59.99756 * 21 9 7 23 23 F 1.39900 * 109.47010 * 300.00147 * 21 9 7 24 24 F 1.39897 * 109.47422 * 179.97438 * 21 9 7 25 25 H 0.97001 * 120.00022 * 359.97438 * 1 2 3 26 26 H 0.97005 * 120.00318 * 25.00910 * 11 9 7 27 27 H 1.08998 * 109.47325 * 299.99535 * 14 12 11 28 28 H 1.08993 * 109.47336 * 60.00295 * 14 12 11 29 29 H 1.08000 * 125.98817 * 180.02562 * 17 16 15 30 30 H 1.08007 * 126.58994 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5567 -0.8904 11 7 2.2030 -3.6126 -0.0005 12 6 1.8369 -4.8123 -0.4938 13 8 0.7195 -4.9698 -0.9382 14 6 2.8161 -5.9579 -0.4933 15 6 2.1640 -7.1763 -1.0944 16 7 1.0428 -7.7130 -0.6972 17 6 0.7691 -8.7816 -1.4602 18 6 1.7579 -8.9116 -2.3651 19 7 2.6401 -7.8901 -2.1373 20 1 3.4564 -7.7137 -2.6307 21 6 0.3718 -2.5805 1.2489 22 9 -0.5373 -1.5171 1.2494 23 9 1.1764 -2.5066 2.3910 24 9 -0.3281 -3.7918 1.2486 25 1 -0.4850 0.8401 0.0004 26 1 3.0969 -3.4866 0.3546 27 1 3.6923 -5.6873 -1.0824 28 1 3.1198 -6.1758 0.5306 29 1 -0.0936 -9.4244 -1.3661 30 1 1.8376 -9.6733 -3.1267 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928802682.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:10 Heat of formation + Delta-G solvation = -138.880717 kcal Electronic energy + Delta-G solvation = -22065.436705 eV Core-core repulsion = 18060.565865 eV Total energy + Delta-G solvation = -4004.870840 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.38788 -48.02305 -47.70415 -42.90926 -40.39018 -36.45406 -34.44827 -33.40425 -33.00479 -30.34637 -28.04978 -26.54745 -23.71331 -22.44159 -22.00966 -21.18279 -19.41521 -18.93723 -18.68192 -18.63693 -18.11515 -17.42662 -16.81616 -16.28878 -15.76017 -15.55189 -14.95692 -14.88153 -14.83033 -14.57920 -14.44280 -14.32888 -14.22755 -14.01990 -13.87756 -13.78336 -13.18777 -12.95544 -12.65957 -12.62727 -12.17657 -11.52542 -10.93441 -10.87070 -10.76267 -10.68265 -10.00227 -9.28741 -8.19338 -6.50304 1.13017 1.47512 1.48882 1.61914 1.74607 2.03100 2.31346 2.36798 2.53975 2.66333 2.96501 3.43549 3.78881 3.88094 4.03518 4.10237 4.28829 4.44486 4.48383 4.64017 4.83067 4.96112 5.19397 5.46417 5.58313 5.67681 5.88299 6.55627 6.59714 6.81015 7.19724 7.29569 7.46711 8.73780 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.031024 B = 0.005185 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.310875 B = 5399.162519 C = 5837.296310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.011 3.989 3 Si 0.985 3.015 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.284 1.284 7 C -0.557 4.557 8 H 0.098 0.902 9 C 0.254 3.746 10 H 0.042 0.958 11 N -0.705 5.705 12 C 0.501 3.499 13 O -0.565 6.565 14 C -0.043 4.043 15 C 0.200 3.800 16 N -0.519 5.519 17 C -0.073 4.073 18 C -0.032 4.032 19 N -0.551 5.551 20 H 0.437 0.563 21 C 0.411 3.589 22 F -0.153 7.153 23 F -0.202 7.202 24 F -0.220 7.220 25 H 0.267 0.733 26 H 0.417 0.583 27 H 0.155 0.845 28 H 0.140 0.860 29 H 0.175 0.825 30 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.365 -11.776 -3.804 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.194 4.194 3 Si 0.808 3.192 4 H -0.174 1.174 5 H -0.205 1.205 6 H -0.210 1.210 7 C -0.594 4.594 8 H 0.115 0.885 9 C 0.146 3.854 10 H 0.060 0.940 11 N -0.358 5.358 12 C 0.288 3.712 13 O -0.443 6.443 14 C -0.084 4.084 15 C -0.065 4.065 16 N -0.239 5.239 17 C -0.220 4.220 18 C -0.167 4.167 19 N -0.156 5.156 20 H 0.278 0.722 21 C 0.355 3.645 22 F -0.134 7.134 23 F -0.184 7.184 24 F -0.202 7.202 25 H 0.077 0.923 26 H 0.254 0.746 27 H 0.173 0.827 28 H 0.157 0.843 29 H 0.192 0.808 30 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 9.861 -11.520 -3.452 15.552 hybrid contribution 0.482 0.662 -0.293 0.870 sum 10.343 -10.858 -3.745 15.457 Atomic orbital electron populations 1.70567 1.07683 1.28007 1.44994 1.26063 0.95856 1.03914 0.93550 0.85086 0.79305 0.77325 0.77437 1.17414 1.20518 1.20952 1.21292 0.94681 0.88122 1.55293 0.88454 1.19257 0.88987 0.87797 0.89343 0.94010 1.45852 1.17197 1.09718 1.63010 1.21127 0.88828 0.84115 0.77166 1.90750 1.23425 1.83135 1.46953 1.20017 0.97087 0.85583 1.05677 1.22581 0.93830 0.98052 0.92022 1.70192 1.13603 1.10079 1.30062 1.22783 1.02615 0.98696 0.97937 1.23302 0.92474 0.96358 1.04531 1.43168 1.22747 1.23091 1.26619 0.72189 1.23396 0.80908 0.72270 0.87937 1.93370 1.69105 1.54635 1.96339 1.92980 1.74049 1.96147 1.55249 1.93083 1.81639 1.48495 1.97020 0.92312 0.74593 0.82711 0.84274 0.80765 0.76247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.36 9.50 21.45 0.20 -49.15 16 2 C 0.01 0.57 5.20 84.65 0.44 1.01 16 3 Si 0.98 40.15 29.54 68.60 2.03 42.18 16 4 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 5 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.56 -27.68 8.46 25.60 0.22 -27.47 16 8 H 0.10 4.35 7.74 -2.91 -0.02 4.32 16 9 C 0.25 12.74 2.21 44.24 0.10 12.84 16 10 H 0.04 2.46 7.58 -2.39 -0.02 2.44 16 11 N -0.71 -27.34 4.98 -446.10 -2.22 -29.56 16 12 C 0.50 19.19 7.35 87.66 0.64 19.84 16 13 O -0.57 -28.21 14.13 -3.03 -0.04 -28.25 16 14 C -0.04 -1.03 6.33 29.10 0.18 -0.85 16 15 C 0.20 5.73 6.96 138.13 0.96 6.70 16 16 N -0.52 -18.99 10.58 -188.13 -1.99 -20.98 16 17 C -0.07 -2.07 11.87 83.52 0.99 -1.07 16 18 C -0.03 -0.62 12.04 83.09 1.00 0.38 16 19 N -0.55 -10.62 6.15 -186.26 -1.15 -11.76 16 20 H 0.44 4.46 8.96 -92.71 -0.83 3.62 16 21 C 0.41 21.88 2.81 71.98 0.20 22.08 16 22 F -0.15 -8.91 12.91 44.97 0.58 -8.33 16 23 F -0.20 -10.05 16.94 44.97 0.76 -9.29 16 24 F -0.22 -12.05 15.68 44.97 0.71 -11.35 16 25 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 26 H 0.42 12.67 8.54 -92.70 -0.79 11.88 16 27 H 0.16 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.14 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.18 4.23 8.06 -2.91 -0.02 4.21 16 30 H 0.22 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -79.67 278.48 3.21 -76.46 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -0.40 Total: 16.59 kcal Atomic # 6 Polarization: 28.71 SS G_CDS: 4.74 Total: 33.45 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -5.16 Total: -111.46 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.04 Total: -28.25 kcal Atomic # 9 Polarization: -31.01 SS G_CDS: 2.05 Total: -28.96 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -79.67 3.21 -76.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928802682.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.424 kcal (2) G-P(sol) polarization free energy of solvation -79.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds