Wall clock time and date at job start Mon Mar 30 2020 02:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34489 * 126.47218 * 2 1 4 4 N 1.30858 * 109.16293 * 179.82525 * 3 2 1 5 5 C 1.33314 * 109.68463 * 0.45406 * 4 3 2 6 6 C 1.36659 * 107.78557 * 359.71888 * 5 4 3 7 7 C 1.46772 * 126.84470 * 180.02562 * 6 5 4 8 8 O 1.21679 * 119.99746 * 185.01551 * 7 6 5 9 9 N 1.34774 * 120.00173 * 5.01215 * 7 6 5 10 10 C 1.46490 * 120.00178 * 184.84278 * 9 7 6 11 11 H 1.08998 * 109.47280 * 35.00615 * 10 9 7 12 12 C 1.50699 * 109.47455 * 155.00579 * 10 9 7 13 13 H 1.08006 * 119.99365 * 359.97438 * 12 10 9 14 14 C 1.37877 * 120.00341 * 180.02562 * 12 10 9 15 15 N 1.31506 * 119.99914 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99828 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47144 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46805 * 120.00045 * 16 14 12 19 19 H 1.48505 * 109.46854 * 239.99947 * 16 14 12 20 20 C 1.53002 * 109.47318 * 275.00194 * 10 9 7 21 21 F 1.39902 * 109.47006 * 60.00171 * 20 10 9 22 22 F 1.39903 * 109.47363 * 179.97438 * 20 10 9 23 23 F 1.39892 * 109.47402 * 300.00104 * 20 10 9 24 24 H 1.09001 * 109.47000 * 264.51614 * 1 2 3 25 25 H 1.09006 * 109.47414 * 144.51464 * 1 2 3 26 26 H 1.08999 * 109.47161 * 24.51467 * 1 2 3 27 27 H 1.08001 * 125.42169 * 0.02562 * 3 2 1 28 28 H 1.08000 * 126.11214 * 179.72715 * 5 4 3 29 29 H 0.97007 * 119.99735 * 4.84828 * 9 7 6 30 30 H 0.97004 * 120.00281 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2644 1.0815 0.0000 4 7 3.5138 0.6922 0.0038 5 6 3.5690 -0.6398 -0.0036 6 6 2.2862 -1.1108 -0.0061 7 6 1.8649 -2.5168 -0.0134 8 8 0.6847 -2.7977 -0.1070 9 7 2.7852 -3.4966 0.0836 10 6 2.3769 -4.8989 -0.0301 11 1 1.5618 -4.9828 -0.7488 12 6 3.5463 -5.7263 -0.4979 13 1 4.4984 -5.2545 -0.6916 14 6 3.4006 -7.0852 -0.6797 15 7 2.2412 -7.6595 -0.4443 16 14 4.8501 -8.1106 -1.2603 17 1 6.0324 -7.2327 -1.4516 18 1 5.1627 -9.1463 -0.2431 19 1 4.5076 -8.7679 -2.5471 20 6 1.9074 -5.4057 1.3351 21 9 0.8217 -4.6377 1.7694 22 9 1.5169 -6.7447 1.2264 23 9 2.9535 -5.2980 2.2576 24 1 -0.3633 -0.0982 1.0230 25 1 -0.3634 -0.8368 -0.5966 26 1 -0.3633 0.9350 -0.4264 27 1 1.9288 2.1080 0.0004 28 1 4.4672 -1.2396 -0.0069 29 1 3.7179 -3.2732 0.2288 30 1 2.1387 -8.6156 -0.5718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928807017.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:18 Heat of formation + Delta-G solvation = -109.021051 kcal Electronic energy + Delta-G solvation = -22338.246663 eV Core-core repulsion = 18334.670636 eV Total energy + Delta-G solvation = -4003.576027 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.38557 -46.03715 -45.65128 -42.07120 -38.69001 -34.91866 -33.88352 -32.65866 -30.29102 -28.00209 -27.04617 -24.63659 -23.23392 -21.55106 -20.87745 -19.75759 -18.10163 -16.99826 -16.84320 -16.67782 -16.12403 -15.80349 -15.58223 -14.96878 -14.57849 -13.91132 -13.79221 -13.51716 -13.12861 -12.95327 -12.85762 -12.71251 -12.54349 -12.43214 -12.31531 -12.02660 -11.86011 -11.22444 -10.90683 -10.85875 -10.46774 -10.21351 -9.71673 -9.66268 -9.43504 -8.78750 -8.59435 -8.31235 -6.28774 -4.53016 1.51281 2.62060 2.96917 3.16113 3.23909 3.27442 3.68166 3.77019 4.18032 4.52191 4.58133 4.74452 4.88713 4.97205 5.21624 5.26367 5.48797 5.61036 5.77378 5.82066 6.12550 6.20010 6.55550 6.83222 7.04818 7.08917 7.39643 7.57662 7.92577 8.19415 8.43784 8.70972 9.15166 10.62986 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.025397 B = 0.006049 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.206552 B = 4627.753240 C = 5188.347964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.428 5.428 3 C 0.193 3.807 4 N -0.500 5.500 5 C 0.031 3.969 6 C -0.072 4.072 7 C 0.583 3.417 8 O -0.540 6.540 9 N -0.696 5.696 10 C 0.248 3.752 11 H 0.086 0.914 12 C -0.553 4.553 13 H 0.080 0.920 14 C 0.065 3.935 15 N -0.840 5.840 16 Si 0.916 3.084 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.417 3.583 21 F -0.217 7.217 22 F -0.136 7.136 23 F -0.208 7.208 24 H 0.079 0.921 25 H 0.104 0.896 26 H 0.085 0.915 27 H 0.209 0.791 28 H 0.180 0.820 29 H 0.402 0.598 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.081 11.400 0.622 11.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.109 5.109 3 C -0.089 4.089 4 N -0.218 5.218 5 C -0.123 4.123 6 C -0.189 4.189 7 C 0.369 3.631 8 O -0.419 6.419 9 N -0.345 5.345 10 C 0.143 3.857 11 H 0.104 0.896 12 C -0.590 4.590 13 H 0.098 0.902 14 C -0.144 4.144 15 N -0.473 5.473 16 Si 0.743 3.257 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.205 1.205 20 C 0.361 3.639 21 F -0.199 7.199 22 F -0.117 7.117 23 F -0.190 7.190 24 H 0.098 0.902 25 H 0.122 0.878 26 H 0.104 0.896 27 H 0.226 0.774 28 H 0.197 0.803 29 H 0.237 0.763 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.589 11.488 0.570 11.611 hybrid contribution 0.256 -1.023 0.164 1.067 sum -1.333 10.465 0.734 10.575 Atomic orbital electron populations 1.22250 0.75391 1.04996 1.04649 1.45238 1.08298 1.05873 1.51487 1.25045 0.85735 0.93495 1.04595 1.70109 1.19013 1.12292 1.20378 1.22663 0.95451 0.91133 1.03059 1.21038 0.91419 0.89224 1.17243 1.16870 0.86024 0.83026 0.77221 1.90789 1.16663 1.83851 1.50569 1.45769 1.10622 1.06316 1.71760 1.19786 1.00106 0.76698 0.89100 0.89641 1.20924 0.96320 0.92574 1.49164 0.90153 1.25084 0.97087 0.97786 0.94418 1.70403 1.23012 1.11950 1.41915 0.86133 0.81385 0.79800 0.78399 1.19271 1.20522 1.20539 1.23099 0.73724 0.77591 0.89520 1.93074 1.58140 1.76713 1.91951 1.93409 1.90883 1.32135 1.95299 1.92994 1.59423 1.96174 1.70415 0.90201 0.87751 0.89601 0.77416 0.80332 0.76338 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 10.61 59.85 0.63 1.38 16 2 N -0.43 -5.86 3.17 -121.97 -0.39 -6.25 16 3 C 0.19 2.33 12.52 -90.58 -1.13 1.20 16 4 N -0.50 -7.37 11.20 -14.43 -0.16 -7.53 16 5 C 0.03 0.46 11.36 -17.48 -0.20 0.26 16 6 C -0.07 -1.19 6.91 -82.14 -0.57 -1.76 16 7 C 0.58 11.54 7.39 -12.81 -0.09 11.44 16 8 O -0.54 -12.07 13.35 5.21 0.07 -12.00 16 9 N -0.70 -14.06 4.96 -56.22 -0.28 -14.34 16 10 C 0.25 6.02 2.20 -69.09 -0.15 5.87 16 11 H 0.09 2.30 7.65 -51.93 -0.40 1.90 16 12 C -0.55 -13.77 8.46 -34.44 -0.29 -14.06 16 13 H 0.08 1.88 7.74 -52.48 -0.41 1.48 16 14 C 0.07 1.66 5.20 -17.82 -0.09 1.57 16 15 N -0.84 -22.60 9.50 55.43 0.53 -22.07 16 16 Si 0.92 19.75 29.54 -169.99 -5.02 14.73 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 20 C 0.42 10.54 2.81 37.16 0.10 10.64 16 21 F -0.22 -5.44 15.48 2.25 0.03 -5.40 16 22 F -0.14 -3.71 12.91 2.25 0.03 -3.68 16 23 F -0.21 -5.09 16.94 2.25 0.04 -5.06 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.10 1.37 6.68 -51.93 -0.35 1.02 16 26 H 0.09 0.58 8.13 -51.93 -0.42 0.16 16 27 H 0.21 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.18 2.29 7.50 -52.49 -0.39 1.89 16 29 H 0.40 7.03 7.52 -40.82 -0.31 6.72 16 30 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 275.57 15.07 4.15 4.15 Total: -1.00 -31.17 275.57 -5.04 -36.22 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -2.25 Total: 4.68 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: -1.79 Total: 16.55 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.30 Total: -50.19 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.07 Total: -12.00 kcal Atomic # 9 Polarization: -14.24 SS G_CDS: 0.10 Total: -14.14 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.17 -5.04 -36.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928807017.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.805 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds