Wall clock time and date at job start Mon Mar 30 2020 02:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34489 * 126.47218 * 2 1 4 4 N 1.30858 * 109.16293 * 179.82525 * 3 2 1 5 5 C 1.33314 * 109.68463 * 0.45406 * 4 3 2 6 6 C 1.36659 * 107.78557 * 359.71888 * 5 4 3 7 7 C 1.46772 * 126.84470 * 180.02562 * 6 5 4 8 8 O 1.21679 * 119.99746 * 185.01551 * 7 6 5 9 9 N 1.34774 * 120.00173 * 5.01215 * 7 6 5 10 10 C 1.46490 * 120.00178 * 184.84278 * 9 7 6 11 11 H 1.08998 * 109.47280 * 35.00615 * 10 9 7 12 12 C 1.50699 * 109.47455 * 155.00579 * 10 9 7 13 13 H 1.08006 * 119.99365 * 359.97438 * 12 10 9 14 14 C 1.37877 * 120.00341 * 180.02562 * 12 10 9 15 15 N 1.31506 * 119.99914 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99828 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47144 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46805 * 120.00045 * 16 14 12 19 19 H 1.48505 * 109.46854 * 239.99947 * 16 14 12 20 20 C 1.53002 * 109.47318 * 275.00194 * 10 9 7 21 21 F 1.39902 * 109.47006 * 60.00171 * 20 10 9 22 22 F 1.39903 * 109.47363 * 179.97438 * 20 10 9 23 23 F 1.39892 * 109.47402 * 300.00104 * 20 10 9 24 24 H 1.09001 * 109.47000 * 264.51614 * 1 2 3 25 25 H 1.09006 * 109.47414 * 144.51464 * 1 2 3 26 26 H 1.08999 * 109.47161 * 24.51467 * 1 2 3 27 27 H 1.08001 * 125.42169 * 0.02562 * 3 2 1 28 28 H 1.08000 * 126.11214 * 179.72715 * 5 4 3 29 29 H 0.97007 * 119.99735 * 4.84828 * 9 7 6 30 30 H 0.97004 * 120.00281 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2644 1.0815 0.0000 4 7 3.5138 0.6922 0.0038 5 6 3.5690 -0.6398 -0.0036 6 6 2.2862 -1.1108 -0.0061 7 6 1.8649 -2.5168 -0.0134 8 8 0.6847 -2.7977 -0.1070 9 7 2.7852 -3.4966 0.0836 10 6 2.3769 -4.8989 -0.0301 11 1 1.5618 -4.9828 -0.7488 12 6 3.5463 -5.7263 -0.4979 13 1 4.4984 -5.2545 -0.6916 14 6 3.4006 -7.0852 -0.6797 15 7 2.2412 -7.6595 -0.4443 16 14 4.8501 -8.1106 -1.2603 17 1 6.0324 -7.2327 -1.4516 18 1 5.1627 -9.1463 -0.2431 19 1 4.5076 -8.7679 -2.5471 20 6 1.9074 -5.4057 1.3351 21 9 0.8217 -4.6377 1.7694 22 9 1.5169 -6.7447 1.2264 23 9 2.9535 -5.2980 2.2576 24 1 -0.3633 -0.0982 1.0230 25 1 -0.3634 -0.8368 -0.5966 26 1 -0.3633 0.9350 -0.4264 27 1 1.9288 2.1080 0.0004 28 1 4.4672 -1.2396 -0.0069 29 1 3.7179 -3.2732 0.2288 30 1 2.1387 -8.6156 -0.5718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928807017.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:18 Heat of formation + Delta-G solvation = -129.448863 kcal Electronic energy + Delta-G solvation = -22339.132480 eV Core-core repulsion = 18334.670636 eV Total energy + Delta-G solvation = -4004.461844 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.43095 -48.06492 -47.73971 -43.16678 -40.27622 -36.62877 -35.04469 -34.42894 -31.72723 -29.62323 -27.97813 -26.61516 -24.73263 -23.05236 -22.17152 -21.26827 -19.56676 -18.88851 -18.74212 -18.60129 -17.74396 -17.09315 -16.93529 -16.76012 -16.08486 -15.29621 -15.12212 -14.97418 -14.95115 -14.63193 -14.47906 -14.37479 -14.27752 -14.03918 -13.88590 -13.82334 -13.54802 -13.07259 -12.75872 -12.66037 -12.21508 -11.57776 -11.45866 -10.90140 -10.71878 -10.69762 -10.19003 -9.63315 -8.22775 -6.53506 0.30167 1.46390 1.48121 1.53185 1.62510 1.85048 2.25319 2.28979 2.42651 2.55580 2.93388 3.53728 3.75375 3.80964 3.86575 3.97738 4.11952 4.17361 4.37601 4.48778 4.71742 4.83966 5.14660 5.31236 5.43623 5.52061 5.63150 6.14295 6.50856 6.57986 6.88319 7.12202 7.23346 8.70326 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.025397 B = 0.006049 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.206552 B = 4627.753240 C = 5188.347964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.433 5.433 3 C 0.222 3.778 4 N -0.528 5.528 5 C 0.043 3.957 6 C -0.110 4.110 7 C 0.582 3.418 8 O -0.575 6.575 9 N -0.692 5.692 10 C 0.257 3.743 11 H 0.051 0.949 12 C -0.562 4.562 13 H 0.095 0.905 14 C 0.016 3.984 15 N -0.875 5.875 16 Si 0.983 3.017 17 H -0.254 1.254 18 H -0.281 1.281 19 H -0.277 1.277 20 C 0.413 3.587 21 F -0.218 7.218 22 F -0.150 7.150 23 F -0.203 7.203 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.134 0.866 27 H 0.261 0.739 28 H 0.194 0.806 29 H 0.415 0.585 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.161 13.365 0.391 13.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.113 5.113 3 C -0.060 4.060 4 N -0.246 5.246 5 C -0.111 4.111 6 C -0.227 4.227 7 C 0.370 3.630 8 O -0.456 6.456 9 N -0.342 5.342 10 C 0.150 3.850 11 H 0.069 0.931 12 C -0.598 4.598 13 H 0.113 0.887 14 C -0.189 4.189 15 N -0.509 5.509 16 Si 0.807 3.193 17 H -0.178 1.178 18 H -0.207 1.207 19 H -0.203 1.203 20 C 0.357 3.643 21 F -0.200 7.200 22 F -0.131 7.131 23 F -0.185 7.185 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.152 0.848 27 H 0.277 0.723 28 H 0.211 0.789 29 H 0.252 0.748 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.337 13.483 0.344 13.491 hybrid contribution -0.185 -1.497 0.260 1.530 sum -0.521 11.986 0.603 12.013 Atomic orbital electron populations 1.22404 0.73977 1.06345 1.04661 1.45472 1.09272 1.05374 1.51213 1.26098 0.84739 0.94825 1.00355 1.70183 1.20582 1.11772 1.22063 1.22981 0.95410 0.91718 1.01025 1.20606 0.92648 0.88213 1.21214 1.17299 0.85350 0.84345 0.75971 1.90764 1.18059 1.84655 1.52094 1.45578 1.11518 1.04956 1.72196 1.19377 0.99037 0.78934 0.87655 0.93098 1.21271 0.96850 0.92909 1.48789 0.88712 1.25986 0.99548 0.99047 0.94348 1.70525 1.25041 1.12203 1.43091 0.85106 0.78508 0.78071 0.77637 1.17780 1.20723 1.20299 1.23290 0.73764 0.77066 0.90162 1.93064 1.58306 1.76642 1.92011 1.93381 1.91056 1.33231 1.95419 1.92989 1.59115 1.96118 1.70274 0.90022 0.90683 0.84792 0.72326 0.78891 0.74813 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.33 10.61 127.77 1.36 2.69 16 2 N -0.43 -10.91 3.17 -539.81 -1.71 -12.63 16 3 C 0.22 4.51 12.52 180.33 2.26 6.77 16 4 N -0.53 -14.04 11.20 -199.57 -2.24 -16.28 16 5 C 0.04 1.23 11.36 84.10 0.96 2.18 16 6 C -0.11 -3.55 6.91 40.01 0.28 -3.27 16 7 C 0.58 23.39 7.39 86.47 0.64 24.02 16 8 O -0.57 -26.59 13.35 -4.28 -0.06 -26.64 16 9 N -0.69 -28.26 4.96 -450.01 -2.23 -30.49 16 10 C 0.26 12.74 2.20 44.25 0.10 12.83 16 11 H 0.05 2.88 7.65 -2.39 -0.02 2.86 16 12 C -0.56 -27.95 8.46 25.60 0.22 -27.73 16 13 H 0.09 4.33 7.74 -2.91 -0.02 4.31 16 14 C 0.02 0.82 5.20 84.66 0.44 1.26 16 15 N -0.87 -47.91 9.50 21.45 0.20 -47.71 16 16 Si 0.98 40.05 29.54 68.60 2.03 42.08 16 17 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 18 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 20 C 0.41 21.33 2.81 71.98 0.20 21.53 16 21 F -0.22 -11.23 15.48 44.97 0.70 -10.53 16 22 F -0.15 -8.38 12.91 44.97 0.58 -7.80 16 23 F -0.20 -9.97 16.94 44.97 0.76 -9.21 16 24 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.07 1.98 6.68 -2.38 -0.02 1.96 16 26 H 0.13 1.30 8.13 -2.39 -0.02 1.28 16 27 H 0.26 2.21 8.06 -2.91 -0.02 2.19 16 28 H 0.19 4.62 7.50 -2.91 -0.02 4.60 16 29 H 0.41 14.36 7.52 -92.70 -0.70 13.66 16 30 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -68.50 275.57 4.98 -63.52 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.51 Total: 15.40 kcal Atomic # 6 Polarization: 33.85 SS G_CDS: 6.44 Total: 40.29 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -5.98 Total: -107.10 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.06 Total: -26.64 kcal Atomic # 9 Polarization: -29.58 SS G_CDS: 2.04 Total: -27.54 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -68.50 4.98 -63.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928807017.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.934 kcal (2) G-P(sol) polarization free energy of solvation -68.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds