Wall clock time and date at job start Mon Mar 30 2020 02:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28438 * 125.18630 * 2 1 4 4 C 1.30875 * 110.92357 * 179.73262 * 3 2 1 5 5 C 1.39666 * 107.85717 * 0.45038 * 4 3 2 6 6 C 1.36593 * 125.19072 * 180.02562 * 2 1 3 7 7 C 1.47168 * 126.88664 * 0.02562 * 6 2 1 8 8 O 1.21627 * 119.99934 * 354.41225 * 7 6 2 9 9 N 1.34773 * 120.00267 * 174.40775 * 7 6 2 10 10 C 1.46496 * 120.00195 * 185.37743 * 9 7 6 11 11 H 1.08998 * 109.47368 * 324.99989 * 10 9 7 12 12 C 1.50699 * 109.47477 * 205.00242 * 10 9 7 13 13 H 1.08006 * 120.00003 * 274.65883 * 12 10 9 14 14 C 1.37874 * 120.00258 * 94.65259 * 12 10 9 15 15 N 1.31517 * 119.99900 * 184.49278 * 14 12 10 16 16 Si 1.86800 * 119.99829 * 4.49243 * 14 12 10 17 17 H 1.48502 * 109.46983 * 94.41065 * 16 14 12 18 18 H 1.48495 * 109.47334 * 214.40945 * 16 14 12 19 19 H 1.48494 * 109.47165 * 334.41303 * 16 14 12 20 20 C 1.53008 * 109.47476 * 84.99931 * 10 9 7 21 21 F 1.39902 * 109.46487 * 54.94627 * 20 10 9 22 22 F 1.39896 * 109.47401 * 174.94422 * 20 10 9 23 23 F 1.39896 * 109.47054 * 294.94853 * 20 10 9 24 24 H 1.08996 * 109.47122 * 274.11583 * 1 2 3 25 25 H 1.08994 * 109.47099 * 34.11955 * 1 2 3 26 26 H 1.09004 * 109.46727 * 154.11388 * 1 2 3 27 27 H 1.07998 * 126.06456 * 180.30700 * 4 3 2 28 28 H 1.08004 * 127.31742 * 179.83035 * 5 4 3 29 29 H 0.96997 * 119.99941 * 5.37263 * 9 7 6 30 30 H 0.96998 * 119.99496 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4736 0.7273 0.0057 5 6 3.5612 -0.6666 -0.0007 6 6 2.2522 -1.1163 -0.0005 7 6 1.7994 -2.5166 -0.0017 8 8 0.6147 -2.7726 0.1003 9 7 2.6972 -3.5151 -0.1158 10 6 2.2395 -4.9016 -0.2355 11 1 1.3399 -5.0404 0.3641 12 6 3.3190 -5.8312 0.2560 13 1 4.1053 -6.1476 -0.4134 14 6 3.3029 -6.2779 1.5603 15 7 4.2913 -7.0172 2.0144 16 14 1.8772 -5.8330 2.6823 17 1 0.8686 -6.9227 2.6569 18 1 2.3763 -5.6529 4.0692 19 1 1.2532 -4.5700 2.2128 20 6 1.9283 -5.2113 -1.7012 21 9 3.0494 -4.9230 -2.4869 22 9 1.6023 -6.5653 -1.8328 23 9 0.8487 -4.4284 -2.1241 24 1 -0.3633 0.0738 1.0250 25 1 -0.3633 0.8507 -0.5764 26 1 -0.3633 -0.9246 -0.4487 27 1 4.3048 1.4167 0.0117 28 1 4.4595 -1.2662 -0.0010 29 1 3.6465 -3.3158 -0.1187 30 1 4.2801 -7.3311 2.9322 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928812111.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:03 Heat of formation + Delta-G solvation = -114.807639 kcal Electronic energy + Delta-G solvation = -22345.700187 eV Core-core repulsion = 18341.873235 eV Total energy + Delta-G solvation = -4003.826953 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.14671 -46.67767 -46.61809 -42.34316 -38.87586 -35.02582 -33.26422 -32.62187 -31.06156 -28.84901 -26.97820 -25.04810 -23.28530 -21.70358 -20.76822 -19.81654 -18.52441 -17.61636 -17.46647 -16.75679 -16.60970 -16.07690 -15.71775 -15.22227 -14.47560 -14.00098 -13.78134 -13.56137 -13.54820 -13.40311 -13.11887 -13.05005 -12.83527 -12.80213 -12.73716 -12.65792 -12.19909 -11.93047 -11.23571 -10.81799 -10.72578 -10.15245 -9.90724 -9.69389 -9.10150 -9.05354 -8.90186 -8.53764 -6.61002 -4.77282 1.48445 2.54056 2.72947 3.05323 3.15939 3.24624 3.44637 3.60535 3.87380 4.03678 4.64155 4.74366 4.84247 5.08909 5.15528 5.21321 5.22728 5.37239 5.40742 5.61378 5.77451 5.90171 6.20648 6.59245 6.79555 6.82358 6.96334 7.74463 8.06780 8.21181 8.44140 8.59717 8.94168 10.46942 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.017817 B = 0.007571 C = 0.006583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.184279 B = 3697.247705 C = 4252.489852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.262 5.262 3 N -0.289 5.289 4 C -0.006 4.006 5 C -0.192 4.192 6 C -0.028 4.028 7 C 0.575 3.425 8 O -0.545 6.545 9 N -0.694 5.694 10 C 0.200 3.800 11 H 0.097 0.903 12 C -0.537 4.537 13 H 0.095 0.905 14 C 0.101 3.899 15 N -0.855 5.855 16 Si 0.863 3.137 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.248 1.248 20 C 0.438 3.562 21 F -0.191 7.191 22 F -0.179 7.179 23 F -0.198 7.198 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.185 0.815 28 H 0.163 0.837 29 H 0.404 0.596 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 10.069 -2.904 10.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.049 5.049 3 N -0.122 5.122 4 C -0.182 4.182 5 C -0.221 4.221 6 C -0.157 4.157 7 C 0.360 3.640 8 O -0.424 6.424 9 N -0.346 5.346 10 C 0.098 3.902 11 H 0.114 0.886 12 C -0.574 4.574 13 H 0.113 0.887 14 C -0.110 4.110 15 N -0.487 5.487 16 Si 0.688 3.312 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.172 1.172 20 C 0.383 3.617 21 F -0.172 7.172 22 F -0.161 7.161 23 F -0.180 7.180 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.132 0.868 27 H 0.202 0.798 28 H 0.181 0.819 29 H 0.241 0.759 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.636 10.651 -2.724 11.931 hybrid contribution 0.377 -0.420 0.418 0.703 sum -4.259 10.230 -2.305 11.319 Atomic orbital electron populations 1.22337 0.72758 1.05975 1.04419 1.45584 1.07811 1.01839 1.49677 1.73145 1.04425 1.13930 1.20669 1.23515 0.93380 0.95004 1.06286 1.22315 0.95897 0.95507 1.08353 1.21775 0.91502 0.90089 1.12353 1.17344 0.86416 0.83180 0.77062 1.90730 1.16425 1.84476 1.50792 1.47316 1.09859 1.06139 1.71246 1.20179 1.01324 0.81834 0.86887 0.88565 1.20726 1.10905 1.27190 0.98606 0.88664 1.25003 0.95645 0.92872 0.97441 1.69855 1.30010 1.31663 1.17156 0.86970 0.82826 0.80994 0.80417 1.19093 1.20307 1.17185 1.21676 0.73287 0.74042 0.92734 1.93079 1.52982 1.93302 1.77875 1.93115 1.92618 1.33725 1.96627 1.93130 1.57430 1.75152 1.92258 0.89977 0.89328 0.86829 0.79830 0.81943 0.75886 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.09 10.89 59.85 0.65 1.74 16 2 N -0.26 -4.14 3.75 -63.88 -0.24 -4.38 16 3 N -0.29 -4.40 11.90 30.59 0.36 -4.04 16 4 C -0.01 -0.08 12.03 -17.43 -0.21 -0.29 16 5 C -0.19 -2.76 10.50 -38.99 -0.41 -3.17 16 6 C -0.03 -0.48 6.96 -82.06 -0.57 -1.05 16 7 C 0.58 11.24 7.36 -12.64 -0.09 11.15 16 8 O -0.55 -11.72 13.50 5.25 0.07 -11.65 16 9 N -0.69 -13.73 4.90 -56.09 -0.27 -14.01 16 10 C 0.20 4.47 1.68 -69.08 -0.12 4.36 16 11 H 0.10 2.27 4.47 -51.93 -0.23 2.03 16 12 C -0.54 -13.26 8.52 -34.44 -0.29 -13.55 16 13 H 0.10 2.54 8.00 -52.48 -0.42 2.12 16 14 C 0.10 2.57 5.47 -17.82 -0.10 2.47 16 15 N -0.85 -22.86 13.96 55.43 0.77 -22.09 16 16 Si 0.86 19.51 27.28 -169.99 -4.64 14.87 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.25 -5.69 6.41 56.52 0.36 -5.33 16 20 C 0.44 9.47 2.83 37.16 0.11 9.58 16 21 F -0.19 -3.99 16.93 2.25 0.04 -3.95 16 22 F -0.18 -3.95 16.89 2.25 0.04 -3.91 16 23 F -0.20 -4.21 16.05 2.25 0.04 -4.18 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.11 1.60 6.20 -51.93 -0.32 1.27 16 27 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.16 1.95 7.59 -52.48 -0.40 1.55 16 29 H 0.40 7.17 7.63 -40.82 -0.31 6.86 16 30 H 0.28 6.89 8.31 -40.82 -0.34 6.56 16 LS Contribution 278.57 15.07 4.20 4.20 Total: -1.00 -29.09 278.57 -2.79 -31.88 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -2.13 Total: 6.01 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -1.03 Total: 11.23 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.62 Total: -44.51 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.07 Total: -11.65 kcal Atomic # 9 Polarization: -12.15 SS G_CDS: 0.11 Total: -12.04 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.64 Total: 14.87 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.09 -2.79 -31.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928812111.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.927 kcal (2) G-P(sol) polarization free energy of solvation -29.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds