Wall clock time and date at job start Mon Mar 30 2020 02:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28438 * 125.18630 * 2 1 4 4 C 1.30875 * 110.92357 * 179.73262 * 3 2 1 5 5 C 1.39666 * 107.85717 * 0.45038 * 4 3 2 6 6 C 1.36593 * 125.19072 * 180.02562 * 2 1 3 7 7 C 1.47168 * 126.88664 * 0.02562 * 6 2 1 8 8 O 1.21627 * 119.99934 * 354.41225 * 7 6 2 9 9 N 1.34773 * 120.00267 * 174.40775 * 7 6 2 10 10 C 1.46496 * 120.00195 * 185.37743 * 9 7 6 11 11 H 1.08998 * 109.47368 * 324.99989 * 10 9 7 12 12 C 1.50699 * 109.47477 * 205.00242 * 10 9 7 13 13 H 1.08006 * 120.00003 * 274.65883 * 12 10 9 14 14 C 1.37874 * 120.00258 * 94.65259 * 12 10 9 15 15 N 1.31517 * 119.99900 * 184.49278 * 14 12 10 16 16 Si 1.86800 * 119.99829 * 4.49243 * 14 12 10 17 17 H 1.48502 * 109.46983 * 94.41065 * 16 14 12 18 18 H 1.48495 * 109.47334 * 214.40945 * 16 14 12 19 19 H 1.48494 * 109.47165 * 334.41303 * 16 14 12 20 20 C 1.53008 * 109.47476 * 84.99931 * 10 9 7 21 21 F 1.39902 * 109.46487 * 54.94627 * 20 10 9 22 22 F 1.39896 * 109.47401 * 174.94422 * 20 10 9 23 23 F 1.39896 * 109.47054 * 294.94853 * 20 10 9 24 24 H 1.08996 * 109.47122 * 274.11583 * 1 2 3 25 25 H 1.08994 * 109.47099 * 34.11955 * 1 2 3 26 26 H 1.09004 * 109.46727 * 154.11388 * 1 2 3 27 27 H 1.07998 * 126.06456 * 180.30700 * 4 3 2 28 28 H 1.08004 * 127.31742 * 179.83035 * 5 4 3 29 29 H 0.96997 * 119.99941 * 5.37263 * 9 7 6 30 30 H 0.96998 * 119.99496 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4736 0.7273 0.0057 5 6 3.5612 -0.6666 -0.0007 6 6 2.2522 -1.1163 -0.0005 7 6 1.7994 -2.5166 -0.0017 8 8 0.6147 -2.7726 0.1003 9 7 2.6972 -3.5151 -0.1158 10 6 2.2395 -4.9016 -0.2355 11 1 1.3399 -5.0404 0.3641 12 6 3.3190 -5.8312 0.2560 13 1 4.1053 -6.1476 -0.4134 14 6 3.3029 -6.2779 1.5603 15 7 4.2913 -7.0172 2.0144 16 14 1.8772 -5.8330 2.6823 17 1 0.8686 -6.9227 2.6569 18 1 2.3763 -5.6529 4.0692 19 1 1.2532 -4.5700 2.2128 20 6 1.9283 -5.2113 -1.7012 21 9 3.0494 -4.9230 -2.4869 22 9 1.6023 -6.5653 -1.8328 23 9 0.8487 -4.4284 -2.1241 24 1 -0.3633 0.0738 1.0250 25 1 -0.3633 0.8507 -0.5764 26 1 -0.3633 -0.9246 -0.4487 27 1 4.3048 1.4167 0.0117 28 1 4.4595 -1.2662 -0.0010 29 1 3.6465 -3.3158 -0.1187 30 1 4.2801 -7.3311 2.9322 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928812111.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:03 Heat of formation + Delta-G solvation = -134.767093 kcal Electronic energy + Delta-G solvation = -22346.565694 eV Core-core repulsion = 18341.873235 eV Total energy + Delta-G solvation = -4004.692460 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.90245 -48.42132 -48.38006 -43.49302 -40.44846 -36.73622 -34.72474 -34.12086 -32.47083 -30.44278 -28.02413 -26.92420 -24.74120 -23.09995 -22.20392 -21.26587 -20.12067 -19.36634 -19.01429 -18.49327 -18.40476 -17.26723 -17.21210 -16.76488 -15.92667 -15.56959 -15.37551 -15.28956 -14.97980 -14.84701 -14.75285 -14.58866 -14.57337 -14.53213 -14.36363 -13.76511 -13.72002 -13.27103 -13.05183 -12.62239 -11.96150 -11.88402 -11.83808 -11.26742 -10.98055 -10.40310 -10.09930 -10.00326 -8.56614 -6.75895 0.19482 1.23078 1.33226 1.38160 1.43411 1.63341 1.90560 2.12749 2.15782 2.23424 2.90747 3.21794 3.31396 3.42336 3.62194 3.76478 4.17279 4.28541 4.36221 4.37596 4.59557 4.70265 4.87933 4.91577 5.31270 5.52756 5.72949 5.85314 6.42759 6.52227 6.97622 7.01604 7.09282 8.55322 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.017817 B = 0.007571 C = 0.006583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.184279 B = 3697.247705 C = 4252.489852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.269 5.269 3 N -0.297 5.297 4 C -0.001 4.001 5 C -0.181 4.181 6 C -0.061 4.061 7 C 0.577 3.423 8 O -0.569 6.569 9 N -0.693 5.693 10 C 0.209 3.791 11 H 0.087 0.913 12 C -0.536 4.536 13 H 0.070 0.930 14 C 0.066 3.934 15 N -0.893 5.893 16 Si 0.915 3.085 17 H -0.262 1.262 18 H -0.271 1.271 19 H -0.254 1.254 20 C 0.440 3.560 21 F -0.186 7.186 22 F -0.183 7.183 23 F -0.194 7.194 24 H 0.092 0.908 25 H 0.114 0.886 26 H 0.097 0.903 27 H 0.224 0.776 28 H 0.184 0.816 29 H 0.415 0.585 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.959 11.857 -2.768 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.057 5.057 3 N -0.130 5.130 4 C -0.176 4.176 5 C -0.210 4.210 6 C -0.190 4.190 7 C 0.364 3.636 8 O -0.449 6.449 9 N -0.345 5.345 10 C 0.104 3.896 11 H 0.105 0.895 12 C -0.574 4.574 13 H 0.088 0.912 14 C -0.141 4.141 15 N -0.527 5.527 16 Si 0.738 3.262 17 H -0.187 1.187 18 H -0.196 1.196 19 H -0.179 1.179 20 C 0.385 3.615 21 F -0.168 7.168 22 F -0.164 7.164 23 F -0.176 7.176 24 H 0.110 0.890 25 H 0.132 0.868 26 H 0.115 0.885 27 H 0.240 0.760 28 H 0.202 0.798 29 H 0.253 0.747 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.609 12.452 -2.594 13.529 hybrid contribution 0.397 -0.884 0.295 1.013 sum -4.212 11.568 -2.298 12.524 Atomic orbital electron populations 1.22466 0.71736 1.06246 1.05405 1.45836 1.08630 1.01491 1.49731 1.73165 1.05341 1.13763 1.20709 1.24191 0.93697 0.95157 1.04557 1.22708 0.95572 0.96375 1.06311 1.21520 0.92928 0.89062 1.15459 1.17551 0.85837 0.84158 0.76095 1.90715 1.17384 1.85075 1.51733 1.46841 1.10593 1.05299 1.71797 1.19888 1.00035 0.82565 0.87069 0.89550 1.20652 1.10680 1.27853 0.98208 0.91221 1.25534 0.97228 0.92820 0.98560 1.69920 1.31633 1.33301 1.17881 0.86174 0.80456 0.80356 0.79168 1.18708 1.19617 1.17853 1.21547 0.73487 0.73936 0.92567 1.93086 1.52744 1.93249 1.77674 1.93108 1.92655 1.34013 1.96636 1.93138 1.57254 1.75024 1.92177 0.88997 0.86772 0.88460 0.75982 0.79831 0.74683 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.96 10.89 127.77 1.39 3.35 16 2 N -0.27 -7.98 3.75 -356.02 -1.33 -9.32 16 3 N -0.30 -8.21 11.90 -57.14 -0.68 -8.89 16 4 C 0.00 -0.02 12.03 85.18 1.02 1.00 16 5 C -0.18 -4.68 10.50 22.65 0.24 -4.44 16 6 C -0.06 -1.98 6.96 40.79 0.28 -1.70 16 7 C 0.58 21.97 7.36 86.59 0.64 22.61 16 8 O -0.57 -24.13 13.50 -4.12 -0.06 -24.19 16 9 N -0.69 -26.80 4.90 -449.63 -2.20 -29.00 16 10 C 0.21 9.22 1.68 44.25 0.07 9.30 16 11 H 0.09 4.03 4.47 -2.39 -0.01 4.02 16 12 C -0.54 -26.57 8.52 25.60 0.22 -26.35 16 13 H 0.07 3.77 8.00 -2.91 -0.02 3.75 16 14 C 0.07 3.34 5.47 84.65 0.46 3.80 16 15 N -0.89 -48.04 13.96 21.45 0.30 -47.74 16 16 Si 0.92 40.05 27.28 68.60 1.87 41.92 16 17 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.25 -11.32 6.41 99.48 0.64 -10.69 16 20 C 0.44 18.79 2.83 71.98 0.20 19.00 16 21 F -0.19 -7.65 16.93 44.97 0.76 -6.88 16 22 F -0.18 -7.98 16.89 44.97 0.76 -7.22 16 23 F -0.19 -8.12 16.05 44.97 0.72 -7.40 16 24 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.10 2.69 6.20 -2.39 -0.01 2.67 16 27 H 0.22 3.16 8.06 -2.91 -0.02 3.13 16 28 H 0.18 3.81 7.59 -2.91 -0.02 3.79 16 29 H 0.41 14.24 7.63 -92.71 -0.71 13.53 16 30 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -61.08 278.57 5.12 -55.96 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.44 Total: 16.18 kcal Atomic # 6 Polarization: 22.03 SS G_CDS: 4.53 Total: 26.56 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -3.92 Total: -94.94 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.06 Total: -24.19 kcal Atomic # 9 Polarization: -23.74 SS G_CDS: 2.24 Total: -21.50 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.87 Total: 41.92 kcal Total: -61.08 5.12 -55.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928812111.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.802 kcal (2) G-P(sol) polarization free energy of solvation -61.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds