Wall clock time and date at job start Mon Mar 30 2020 02:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35842 * 126.13411 * 2 1 4 4 N 1.30181 * 109.00180 * 179.82115 * 3 2 1 5 5 C 1.35763 * 108.86052 * 0.44792 * 4 3 2 6 6 C 1.47323 * 126.23019 * 179.70175 * 5 4 3 7 7 O 1.21629 * 119.99901 * 180.02562 * 6 5 4 8 8 N 1.34784 * 120.00183 * 0.02562 * 6 5 4 9 9 C 1.46494 * 119.99901 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.47181 * 325.00017 * 9 8 6 11 11 C 1.50703 * 109.47214 * 205.00040 * 9 8 6 12 12 H 1.08002 * 119.99813 * 0.02562 * 11 9 8 13 13 C 1.37877 * 120.00089 * 179.97438 * 11 9 8 14 14 N 1.31513 * 120.00241 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 119.99934 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46847 * 90.00163 * 15 13 11 17 17 H 1.48498 * 109.46957 * 210.00081 * 15 13 11 18 18 H 1.48497 * 109.46956 * 330.00291 * 15 13 11 19 19 C 1.53001 * 109.47233 * 85.00158 * 9 8 6 20 20 F 1.39895 * 109.47016 * 59.99622 * 19 9 8 21 21 F 1.39900 * 109.47309 * 179.97438 * 19 9 8 22 22 F 1.39900 * 109.47078 * 299.99998 * 19 9 8 23 23 C 1.35378 * 126.13337 * 180.31800 * 2 1 3 24 24 H 1.09001 * 109.47060 * 269.69039 * 1 2 3 25 25 H 1.09004 * 109.47073 * 29.68528 * 1 2 3 26 26 H 1.09000 * 109.47212 * 149.68611 * 1 2 3 27 27 H 1.07999 * 125.50593 * 359.97438 * 3 2 1 28 28 H 0.96993 * 119.99967 * 0.02562 * 8 6 5 29 29 H 0.97000 * 120.00540 * 179.97438 * 14 13 11 30 30 H 1.08005 * 126.56570 * 359.97390 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2661 1.0971 0.0000 4 7 3.5101 0.7136 0.0038 5 6 3.5511 -0.6434 -0.0036 6 6 4.7652 -1.4778 -0.0086 7 8 4.6698 -2.6903 -0.0157 8 7 5.9818 -0.8976 -0.0054 9 6 7.1890 -1.7274 -0.0098 10 1 7.0116 -2.6302 0.5747 11 6 8.3324 -0.9541 0.5949 12 1 8.1753 0.0546 0.9477 13 6 9.5787 -1.5345 0.6988 14 7 9.7699 -2.7629 0.2697 15 14 10.9958 -0.5761 1.4491 16 1 11.0354 -0.8168 2.9140 17 1 12.2737 -1.0235 0.8392 18 1 10.8046 0.8736 1.1907 19 6 7.5383 -2.1121 -1.4489 20 9 7.7660 -0.9534 -2.1991 21 9 8.6915 -2.9041 -1.4532 22 9 6.4769 -2.8300 -2.0104 23 6 2.2633 -1.0934 -0.0061 24 1 -0.3633 -0.0056 1.0277 25 1 -0.3633 0.8928 -0.5090 26 1 -0.3634 -0.8872 -0.5187 27 1 1.9259 2.1221 -0.0004 28 1 6.0579 0.0693 0.0006 29 1 10.6468 -3.1712 0.3424 30 1 1.9421 -2.1245 -0.0114 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928813963.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:13 Heat of formation + Delta-G solvation = -108.460844 kcal Electronic energy + Delta-G solvation = -22011.062121 eV Core-core repulsion = 18007.510386 eV Total energy + Delta-G solvation = -4003.551735 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.24141 -45.89289 -45.51073 -42.05629 -38.46864 -34.52439 -34.14051 -32.39834 -29.78035 -28.52588 -27.02498 -24.48742 -23.15839 -21.31051 -20.85871 -19.54113 -18.04237 -16.89473 -16.70631 -16.51476 -16.00973 -15.85479 -15.39387 -14.83505 -14.51224 -13.99863 -13.72994 -13.65232 -13.06714 -12.93977 -12.84186 -12.75994 -12.37257 -12.28610 -12.16292 -11.86379 -11.71188 -11.10880 -10.77062 -10.70564 -10.32904 -10.17748 -9.75049 -9.56305 -9.31744 -8.63214 -8.54556 -8.07994 -6.14921 -4.37589 1.79534 2.60241 2.62521 3.25494 3.31523 3.35588 3.98169 4.07131 4.30179 4.45235 4.59101 4.70333 4.77419 4.79699 5.02145 5.04893 5.39728 5.65201 5.95244 5.98552 6.03323 6.33385 6.54264 6.98104 7.07844 7.32658 7.58527 7.72396 7.88562 8.53399 8.61266 9.03435 9.29786 10.76962 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.027618 B = 0.005405 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.599127 B = 5179.385001 C = 5692.849634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.466 5.466 3 C 0.177 3.823 4 N -0.460 5.460 5 C -0.048 4.048 6 C 0.592 3.408 7 O -0.543 6.543 8 N -0.695 5.695 9 C 0.244 3.756 10 H 0.086 0.914 11 C -0.548 4.548 12 H 0.078 0.922 13 C 0.064 3.936 14 N -0.842 5.842 15 Si 0.915 3.085 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.417 3.583 20 F -0.208 7.208 21 F -0.137 7.137 22 F -0.218 7.218 23 C 0.024 3.976 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.209 0.791 28 H 0.407 0.593 29 H 0.267 0.733 30 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.952 6.207 -0.302 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.149 5.149 3 C -0.106 4.106 4 N -0.178 5.178 5 C -0.177 4.177 6 C 0.377 3.623 7 O -0.421 6.421 8 N -0.343 5.343 9 C 0.138 3.862 10 H 0.103 0.897 11 C -0.585 4.585 12 H 0.096 0.904 13 C -0.144 4.144 14 N -0.475 5.475 15 Si 0.742 3.258 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.195 1.195 19 C 0.361 3.639 20 F -0.190 7.190 21 F -0.118 7.118 22 F -0.200 7.200 23 C -0.114 4.114 24 H 0.097 0.903 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.226 0.774 28 H 0.242 0.758 29 H 0.078 0.922 30 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -15.260 5.671 -0.350 16.283 hybrid contribution 0.022 0.401 -0.008 0.401 sum -15.238 6.071 -0.358 16.407 Atomic orbital electron populations 1.22086 0.76236 1.04881 1.03781 1.45313 1.07965 1.07018 1.54577 1.25174 0.85329 0.93450 1.06658 1.70650 1.19261 1.10747 1.17186 1.20831 0.93556 0.90326 1.13011 1.16988 0.82236 0.86485 0.76623 1.90784 1.86790 1.13225 1.51270 1.45878 1.04825 1.11175 1.72455 1.19750 0.83540 0.95124 0.87785 0.89685 1.20906 0.92939 1.01506 1.43196 0.90362 1.25082 0.99161 0.95441 0.94736 1.70406 1.23965 1.12731 1.40402 0.86207 0.80487 0.80030 0.79083 1.20245 1.20863 1.19470 1.23121 0.75002 0.74192 0.91581 1.92990 1.94861 1.51322 1.79862 1.93401 1.48037 1.74207 1.96173 1.93063 1.58972 1.79695 1.88249 1.22583 0.90284 0.93050 1.05479 0.90314 0.89253 0.89443 0.77413 0.75810 0.92217 0.79554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 11.15 59.85 0.67 1.01 16 2 N -0.47 -4.81 3.13 -125.77 -0.39 -5.21 16 3 C 0.18 2.04 12.55 -89.91 -1.13 0.92 16 4 N -0.46 -7.55 11.01 -11.03 -0.12 -7.67 16 5 C -0.05 -0.87 6.98 -83.09 -0.58 -1.45 16 6 C 0.59 13.19 7.34 -12.56 -0.09 13.09 16 7 O -0.54 -13.45 15.45 5.25 0.08 -13.37 16 8 N -0.70 -16.11 4.98 -56.04 -0.28 -16.39 16 9 C 0.24 6.44 2.21 -69.08 -0.15 6.29 16 10 H 0.09 2.46 7.58 -51.93 -0.39 2.07 16 11 C -0.55 -14.73 8.46 -34.44 -0.29 -15.02 16 12 H 0.08 2.02 7.74 -52.49 -0.41 1.61 16 13 C 0.06 1.73 5.20 -17.82 -0.09 1.63 16 14 N -0.84 -23.72 9.50 55.43 0.53 -23.19 16 15 Si 0.92 20.78 29.54 -169.99 -5.02 15.76 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 C 0.42 11.27 2.81 37.16 0.10 11.38 16 20 F -0.21 -5.48 16.94 2.25 0.04 -5.44 16 21 F -0.14 -3.93 12.91 2.25 0.03 -3.90 16 22 F -0.22 -5.81 15.67 2.25 0.04 -5.78 16 23 C 0.02 0.33 11.26 -16.64 -0.19 0.15 16 24 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.21 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.41 8.84 8.25 -40.82 -0.34 8.50 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.19 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 280.84 15.07 4.23 4.23 Total: -1.00 -33.94 280.84 -5.01 -38.95 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -2.38 Total: 4.00 kcal Atomic # 6 Polarization: 19.76 SS G_CDS: -1.75 Total: 18.00 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.27 Total: -52.46 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.08 Total: -13.37 kcal Atomic # 9 Polarization: -15.21 SS G_CDS: 0.10 Total: -15.11 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.94 -5.01 -38.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928813963.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.509 kcal (2) G-P(sol) polarization free energy of solvation -33.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds