Wall clock time and date at job start Mon Mar 30 2020 02:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35842 * 126.13411 * 2 1 4 4 N 1.30181 * 109.00180 * 179.82115 * 3 2 1 5 5 C 1.35763 * 108.86052 * 0.44792 * 4 3 2 6 6 C 1.47323 * 126.23019 * 179.70175 * 5 4 3 7 7 O 1.21629 * 119.99901 * 180.02562 * 6 5 4 8 8 N 1.34784 * 120.00183 * 0.02562 * 6 5 4 9 9 C 1.46494 * 119.99901 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.47181 * 325.00017 * 9 8 6 11 11 C 1.50703 * 109.47214 * 205.00040 * 9 8 6 12 12 H 1.08002 * 119.99813 * 0.02562 * 11 9 8 13 13 C 1.37877 * 120.00089 * 179.97438 * 11 9 8 14 14 N 1.31513 * 120.00241 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 119.99934 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46847 * 90.00163 * 15 13 11 17 17 H 1.48498 * 109.46957 * 210.00081 * 15 13 11 18 18 H 1.48497 * 109.46956 * 330.00291 * 15 13 11 19 19 C 1.53001 * 109.47233 * 85.00158 * 9 8 6 20 20 F 1.39895 * 109.47016 * 59.99622 * 19 9 8 21 21 F 1.39900 * 109.47309 * 179.97438 * 19 9 8 22 22 F 1.39900 * 109.47078 * 299.99998 * 19 9 8 23 23 C 1.35378 * 126.13337 * 180.31800 * 2 1 3 24 24 H 1.09001 * 109.47060 * 269.69039 * 1 2 3 25 25 H 1.09004 * 109.47073 * 29.68528 * 1 2 3 26 26 H 1.09000 * 109.47212 * 149.68611 * 1 2 3 27 27 H 1.07999 * 125.50593 * 359.97438 * 3 2 1 28 28 H 0.96993 * 119.99967 * 0.02562 * 8 6 5 29 29 H 0.97000 * 120.00540 * 179.97438 * 14 13 11 30 30 H 1.08005 * 126.56570 * 359.97390 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2661 1.0971 0.0000 4 7 3.5101 0.7136 0.0038 5 6 3.5511 -0.6434 -0.0036 6 6 4.7652 -1.4778 -0.0086 7 8 4.6698 -2.6903 -0.0157 8 7 5.9818 -0.8976 -0.0054 9 6 7.1890 -1.7274 -0.0098 10 1 7.0116 -2.6302 0.5747 11 6 8.3324 -0.9541 0.5949 12 1 8.1753 0.0546 0.9477 13 6 9.5787 -1.5345 0.6988 14 7 9.7699 -2.7629 0.2697 15 14 10.9958 -0.5761 1.4491 16 1 11.0354 -0.8168 2.9140 17 1 12.2737 -1.0235 0.8392 18 1 10.8046 0.8736 1.1907 19 6 7.5383 -2.1121 -1.4489 20 9 7.7660 -0.9534 -2.1991 21 9 8.6915 -2.9041 -1.4532 22 9 6.4769 -2.8300 -2.0104 23 6 2.2633 -1.0934 -0.0061 24 1 -0.3633 -0.0056 1.0277 25 1 -0.3633 0.8928 -0.5090 26 1 -0.3634 -0.8872 -0.5187 27 1 1.9259 2.1221 -0.0004 28 1 6.0579 0.0693 0.0006 29 1 10.6468 -3.1712 0.3424 30 1 1.9421 -2.1245 -0.0114 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928813963.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:13 Heat of formation + Delta-G solvation = -131.989757 kcal Electronic energy + Delta-G solvation = -22012.082411 eV Core-core repulsion = 18007.510386 eV Total energy + Delta-G solvation = -4004.572025 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.43190 -48.06767 -47.73620 -43.07703 -40.21429 -36.48117 -35.07144 -34.34631 -31.08636 -30.16775 -27.87148 -26.59646 -24.67875 -22.93068 -21.99986 -21.19912 -19.53247 -18.87543 -18.71999 -18.57938 -17.69559 -17.02414 -16.81953 -16.70063 -15.98120 -15.37074 -15.08071 -14.97257 -14.82259 -14.76626 -14.49056 -14.38329 -14.28342 -14.03299 -13.86406 -13.60714 -13.39121 -13.05497 -12.76246 -12.60988 -12.22271 -11.59666 -11.34293 -10.99265 -10.68181 -10.67063 -10.09802 -9.58814 -8.21125 -6.52066 0.59520 1.46355 1.47588 1.51195 1.59997 1.78533 2.29111 2.38229 2.51745 2.64651 2.94041 3.47185 3.75846 3.83935 3.92360 4.03507 4.15833 4.27623 4.51254 4.56062 4.80111 4.90531 5.07091 5.41799 5.45226 5.54885 5.64491 6.18244 6.52112 6.64634 6.95760 7.16516 7.34103 8.72079 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.027618 B = 0.005405 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.599127 B = 5179.385001 C = 5692.849634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.454 5.454 3 C 0.198 3.802 4 N -0.504 5.504 5 C -0.098 4.098 6 C 0.587 3.413 7 O -0.581 6.581 8 N -0.696 5.696 9 C 0.250 3.750 10 H 0.050 0.950 11 C -0.563 4.563 12 H 0.086 0.914 13 C 0.016 3.984 14 N -0.874 5.874 15 Si 0.986 3.014 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.261 1.261 19 C 0.415 3.585 20 F -0.204 7.204 21 F -0.148 7.148 22 F -0.218 7.218 23 C 0.043 3.957 24 H 0.096 0.904 25 H 0.119 0.881 26 H 0.099 0.901 27 H 0.258 0.742 28 H 0.413 0.587 29 H 0.270 0.730 30 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.793 8.352 0.099 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.134 5.134 3 C -0.087 4.087 4 N -0.223 5.223 5 C -0.226 4.226 6 C 0.375 3.625 7 O -0.461 6.461 8 N -0.344 5.344 9 C 0.143 3.857 10 H 0.068 0.932 11 C -0.600 4.600 12 H 0.104 0.896 13 C -0.190 4.190 14 N -0.508 5.508 15 Si 0.809 3.191 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.185 1.185 19 C 0.359 3.641 20 F -0.186 7.186 21 F -0.129 7.129 22 F -0.200 7.200 23 C -0.099 4.099 24 H 0.114 0.886 25 H 0.138 0.862 26 H 0.117 0.883 27 H 0.274 0.726 28 H 0.249 0.751 29 H 0.080 0.920 30 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -17.158 7.846 0.050 18.867 hybrid contribution 0.400 -0.242 -0.155 0.493 sum -16.758 7.605 -0.106 18.403 Atomic orbital electron populations 1.22555 0.72396 1.07077 1.05612 1.45630 1.10005 1.05434 1.52368 1.26081 0.84062 0.95351 1.03180 1.70533 1.22400 1.09881 1.19474 1.20340 0.92946 0.91269 1.18057 1.17636 0.83095 0.86634 0.75140 1.90735 1.87431 1.14968 1.52990 1.45778 1.04472 1.11058 1.73123 1.19385 0.85057 0.94377 0.86844 0.93213 1.21189 0.93357 1.01904 1.43508 0.89567 1.26016 1.01787 0.96312 0.94849 1.70524 1.24681 1.14265 1.41312 0.85121 0.76763 0.78816 0.78393 1.19324 1.20583 1.18517 1.23243 0.74655 0.74127 0.92078 1.92983 1.94836 1.51003 1.79762 1.93376 1.48696 1.74568 1.96267 1.93054 1.58930 1.79762 1.88288 1.22734 0.89488 0.94599 1.03056 0.88584 0.86212 0.88277 0.72621 0.75119 0.92031 0.78276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 11.15 127.77 1.42 1.73 16 2 N -0.45 -7.81 3.13 -551.82 -1.72 -9.53 16 3 C 0.20 3.89 12.55 180.10 2.26 6.15 16 4 N -0.50 -15.98 11.01 -188.82 -2.08 -18.06 16 5 C -0.10 -3.57 6.98 40.50 0.28 -3.29 16 6 C 0.59 27.12 7.34 86.63 0.64 27.76 16 7 O -0.58 -30.11 15.45 -4.12 -0.06 -30.17 16 8 N -0.70 -33.42 4.98 -449.45 -2.24 -35.66 16 9 C 0.25 13.74 2.21 44.25 0.10 13.84 16 10 H 0.05 3.07 7.58 -2.39 -0.02 3.05 16 11 C -0.56 -30.74 8.46 25.60 0.22 -30.52 16 12 H 0.09 4.46 7.74 -2.91 -0.02 4.44 16 13 C 0.02 0.84 5.20 84.65 0.44 1.28 16 14 N -0.87 -50.23 9.50 21.45 0.20 -50.02 16 15 Si 0.99 42.45 29.54 68.60 2.03 44.47 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 17 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 19 C 0.42 23.14 2.81 71.98 0.20 23.34 16 20 F -0.20 -10.89 16.94 44.97 0.76 -10.13 16 21 F -0.15 -8.73 12.91 44.97 0.58 -8.15 16 22 F -0.22 -12.06 15.67 44.97 0.70 -11.35 16 23 C 0.04 1.13 11.26 83.72 0.94 2.08 16 24 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 25 H 0.12 -0.05 8.14 -2.38 -0.02 -0.07 16 26 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.26 2.16 8.06 -2.91 -0.02 2.14 16 28 H 0.41 18.47 8.25 -92.71 -0.76 17.71 16 29 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 30 H 0.20 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -76.80 280.84 5.11 -71.69 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.44 Total: 14.53 kcal Atomic # 6 Polarization: 35.88 SS G_CDS: 6.50 Total: 42.38 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -5.84 Total: -113.27 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.06 Total: -30.17 kcal Atomic # 9 Polarization: -31.68 SS G_CDS: 2.05 Total: -29.63 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -76.80 5.11 -71.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928813963.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.300 kcal (2) G-P(sol) polarization free energy of solvation -76.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds