Wall clock time and date at job start Mon Mar 30 2020 02:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.38356 * 127.15086 * 2 1 4 4 C 1.39784 * 126.56278 * 359.97438 * 3 2 1 5 5 H 1.07990 * 119.99937 * 5.89831 * 4 3 2 6 6 C 1.40079 * 119.99787 * 185.89991 * 4 3 2 7 7 N 1.30818 * 120.00007 * 6.44701 * 6 4 3 8 8 Si 1.86802 * 120.00049 * 186.44417 * 6 4 3 9 9 H 1.48499 * 109.47321 * 265.01629 * 8 6 4 10 10 H 1.48499 * 109.46774 * 25.01756 * 8 6 4 11 11 H 1.48500 * 109.47127 * 145.01048 * 8 6 4 12 12 N 1.33102 * 106.87243 * 179.73573 * 3 2 1 13 13 N 1.28511 * 109.74196 * 0.23618 * 12 3 2 14 14 C 1.32388 * 110.20972 * 0.02562 * 13 12 3 15 15 S 1.76199 * 126.26079 * 180.02562 * 14 13 12 16 16 C 1.80999 * 99.99815 * 359.97438 * 15 14 13 17 17 C 1.50702 * 109.46668 * 179.97438 * 16 15 14 18 18 N 1.31798 * 119.12425 * 269.72429 * 17 16 15 19 19 C 1.32333 * 120.81635 * 179.76483 * 18 17 16 20 20 C 1.38596 * 119.10758 * 0.50547 * 19 18 17 21 21 C 1.38595 * 118.39704 * 359.74814 * 20 19 18 22 22 N 1.31798 * 119.12489 * 90.00126 * 17 16 15 23 23 H 1.09010 * 109.46877 * 90.00510 * 1 2 3 24 24 H 1.09003 * 109.47456 * 209.99870 * 1 2 3 25 25 H 1.08999 * 109.47490 * 330.00543 * 1 2 3 26 26 H 0.97004 * 120.00095 * 179.97438 * 7 6 4 27 27 H 1.09006 * 109.46870 * 299.99427 * 16 15 14 28 28 H 1.08993 * 109.47400 * 59.99540 * 16 15 14 29 29 H 1.08003 * 120.43963 * 180.28129 * 19 18 17 30 30 H 1.08000 * 120.79720 * 179.77939 * 20 19 18 31 31 H 1.08004 * 120.44941 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3005 1.1028 0.0000 4 6 1.9085 2.4445 -0.0005 5 1 0.8641 2.7019 0.0952 6 6 2.8704 3.4551 -0.1251 7 7 4.1179 3.1445 -0.3672 8 14 2.3718 5.2464 0.0543 9 1 2.1059 5.8231 -1.2881 10 1 1.1439 5.3376 0.8844 11 1 3.4693 6.0025 0.7093 12 7 3.5490 0.6415 0.0059 13 7 3.5370 -0.6436 0.0044 14 6 2.2904 -1.0893 -0.0030 15 16 1.7874 -2.7780 -0.0070 16 6 3.4060 -3.5880 0.0009 17 6 3.2192 -5.0834 -0.0006 18 7 3.1394 -5.7210 1.1501 19 6 2.9708 -7.0330 1.1879 20 6 2.8890 -7.7368 -0.0033 21 6 2.9824 -7.0320 -1.1930 22 7 3.1456 -5.7195 -1.1525 23 1 -0.3633 -0.0001 -1.0278 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 4.7840 3.8444 -0.4539 27 1 3.9655 -3.2904 -0.8860 28 1 3.9562 -3.2918 0.8940 29 1 2.9017 -7.5488 2.1343 30 1 2.7551 -8.8085 -0.0043 31 1 2.9224 -7.5471 -2.1405 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116887281.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:20 Heat of formation + Delta-G solvation = 121.154097 kcal Electronic energy + Delta-G solvation = -17820.302530 eV Core-core repulsion = 14843.610008 eV Total energy + Delta-G solvation = -2976.692522 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.069 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.10936 -40.49863 -33.84241 -33.70231 -33.47107 -33.17850 -29.40518 -28.56221 -26.47588 -25.50903 -24.68762 -22.95289 -20.83957 -20.44884 -17.66834 -17.44835 -17.14961 -16.16543 -15.60359 -15.42676 -15.09582 -14.72287 -14.33425 -13.79724 -13.52909 -13.40343 -12.93563 -12.89024 -12.24797 -12.22127 -11.42801 -11.29111 -11.01010 -10.97708 -10.92252 -10.54255 -10.36201 -9.72795 -9.58451 -9.57152 -9.34778 -8.69738 -8.44318 -8.36877 -6.82983 -6.65638 -4.56014 0.57464 0.96067 2.04546 2.73956 2.92332 3.07630 3.11767 3.36401 3.69535 3.79127 3.88728 4.02559 4.24632 4.41413 4.42430 4.78902 4.91205 5.13902 5.32939 5.38759 5.55927 5.71349 5.90346 5.91867 6.05640 6.24060 6.76639 6.85801 6.90428 7.24777 7.49183 7.88688 7.96901 8.18957 8.70957 8.86468 10.27971 10.63445 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.050230 B = 0.003615 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.298268 B = 7742.840296 C = 8007.930060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.514 5.514 3 C 0.349 3.651 4 C -0.449 4.449 5 H 0.085 0.915 6 C 0.080 3.920 7 N -0.737 5.737 8 Si 0.921 3.079 9 H -0.270 1.270 10 H -0.262 1.262 11 H -0.274 1.274 12 N -0.334 5.334 13 N -0.283 5.283 14 C 0.044 3.956 15 S -0.022 6.022 16 C -0.032 4.032 17 C 0.340 3.660 18 N -0.504 5.504 19 C 0.148 3.852 20 C -0.234 4.234 21 C 0.148 3.852 22 N -0.504 5.504 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.280 0.720 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.170 0.830 30 H 0.148 0.852 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.288 -15.841 0.504 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.217 5.217 3 C 0.105 3.895 4 C -0.489 4.489 5 H 0.103 0.897 6 C -0.146 4.146 7 N -0.361 5.361 8 Si 0.744 3.256 9 H -0.195 1.195 10 H -0.186 1.186 11 H -0.199 1.199 12 N -0.182 5.182 13 N -0.129 5.129 14 C -0.328 4.328 15 S 0.204 5.796 16 C -0.182 4.182 17 C 0.072 3.928 18 N -0.218 5.218 19 C -0.018 4.018 20 C -0.257 4.257 21 C -0.018 4.018 22 N -0.218 5.218 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.187 0.813 30 H 0.165 0.835 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.464 -15.281 0.474 15.927 hybrid contribution -0.612 0.408 0.043 0.736 sum -5.075 -14.873 0.517 15.724 Atomic orbital electron populations 1.21499 0.78498 1.02646 1.01710 1.46026 1.06093 1.05227 1.64317 1.21617 0.84712 0.88382 0.94786 1.18100 0.95305 0.86454 1.49011 0.89735 1.25789 0.94306 1.01311 0.93166 1.69992 1.01685 1.35107 1.29336 0.86110 0.79383 0.80884 0.79191 1.19484 1.18570 1.19903 1.75417 1.15372 0.97879 1.29503 1.74523 1.15074 1.07617 1.15725 1.25233 0.91648 0.92447 1.23467 1.84483 1.07710 0.91686 1.95710 1.21919 0.99801 0.87426 1.09066 1.22374 0.90578 0.96118 0.83706 1.68284 1.13077 1.10164 1.30324 1.23285 0.90033 0.89595 0.98890 1.22925 1.04708 1.02999 0.95075 1.23287 0.90012 0.89578 0.98914 1.68284 1.13090 1.10197 1.30243 0.92446 0.91628 0.90304 0.90925 0.86373 0.86408 0.81339 0.83463 0.81333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.90 10.89 59.84 0.65 2.55 16 2 N -0.51 -12.70 3.26 -123.17 -0.40 -13.10 16 3 C 0.35 9.90 7.50 -154.80 -1.16 8.73 16 4 C -0.45 -11.98 9.05 -38.31 -0.35 -12.33 16 5 H 0.08 2.04 7.27 -52.49 -0.38 1.66 16 6 C 0.08 2.06 5.49 -17.29 -0.09 1.96 16 7 N -0.74 -20.40 12.00 55.56 0.67 -19.73 16 8 Si 0.92 18.62 29.57 -169.99 -5.03 13.59 16 9 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 10 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 11 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 12 N -0.33 -10.18 10.56 31.26 0.33 -9.85 16 13 N -0.28 -7.91 11.62 30.89 0.36 -7.55 16 14 C 0.04 1.08 8.09 -87.28 -0.71 0.38 16 15 S -0.02 -0.43 21.77 -107.50 -2.34 -2.77 16 16 C -0.03 -0.57 5.66 36.01 0.20 -0.37 16 17 C 0.34 5.30 6.90 -157.19 -1.08 4.21 16 18 N -0.50 -7.19 10.33 -10.72 -0.11 -7.30 16 19 C 0.15 1.48 11.30 -17.20 -0.19 1.28 16 20 C -0.23 -1.89 10.17 -39.32 -0.40 -2.29 16 21 C 0.15 1.48 11.30 -17.21 -0.19 1.29 16 22 N -0.50 -7.21 10.33 -10.72 -0.11 -7.32 16 23 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 24 H 0.06 1.08 7.85 -51.93 -0.41 0.68 16 25 H 0.08 1.37 7.48 -51.93 -0.39 0.98 16 26 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 27 H 0.12 2.19 8.14 -51.91 -0.42 1.77 16 28 H 0.12 2.17 8.14 -51.92 -0.42 1.75 16 29 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 30 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 31 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 296.61 15.07 4.47 4.47 Total: -1.00 -35.01 296.61 -8.34 -43.35 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -2.85 Total: 0.80 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -3.33 Total: 5.42 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: 0.73 Total: -64.85 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Atomic # 16 Polarization: -0.43 SS G_CDS: -2.34 Total: -2.77 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -35.01 -8.34 -43.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116887281.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.500 kcal (2) G-P(sol) polarization free energy of solvation -35.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds