Wall clock time and date at job start Mon Mar 30 2020 02:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.38356 * 127.15086 * 2 1 4 4 C 1.39784 * 126.56278 * 359.97438 * 3 2 1 5 5 H 1.07990 * 119.99937 * 5.89831 * 4 3 2 6 6 C 1.40079 * 119.99787 * 185.89991 * 4 3 2 7 7 N 1.30818 * 120.00007 * 6.44701 * 6 4 3 8 8 Si 1.86802 * 120.00049 * 186.44417 * 6 4 3 9 9 H 1.48499 * 109.47321 * 265.01629 * 8 6 4 10 10 H 1.48499 * 109.46774 * 25.01756 * 8 6 4 11 11 H 1.48500 * 109.47127 * 145.01048 * 8 6 4 12 12 N 1.33102 * 106.87243 * 179.73573 * 3 2 1 13 13 N 1.28511 * 109.74196 * 0.23618 * 12 3 2 14 14 C 1.32388 * 110.20972 * 0.02562 * 13 12 3 15 15 S 1.76199 * 126.26079 * 180.02562 * 14 13 12 16 16 C 1.80999 * 99.99815 * 359.97438 * 15 14 13 17 17 C 1.50702 * 109.46668 * 179.97438 * 16 15 14 18 18 N 1.31798 * 119.12425 * 269.72429 * 17 16 15 19 19 C 1.32333 * 120.81635 * 179.76483 * 18 17 16 20 20 C 1.38596 * 119.10758 * 0.50547 * 19 18 17 21 21 C 1.38595 * 118.39704 * 359.74814 * 20 19 18 22 22 N 1.31798 * 119.12489 * 90.00126 * 17 16 15 23 23 H 1.09010 * 109.46877 * 90.00510 * 1 2 3 24 24 H 1.09003 * 109.47456 * 209.99870 * 1 2 3 25 25 H 1.08999 * 109.47490 * 330.00543 * 1 2 3 26 26 H 0.97004 * 120.00095 * 179.97438 * 7 6 4 27 27 H 1.09006 * 109.46870 * 299.99427 * 16 15 14 28 28 H 1.08993 * 109.47400 * 59.99540 * 16 15 14 29 29 H 1.08003 * 120.43963 * 180.28129 * 19 18 17 30 30 H 1.08000 * 120.79720 * 179.77939 * 20 19 18 31 31 H 1.08004 * 120.44941 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3005 1.1028 0.0000 4 6 1.9085 2.4445 -0.0005 5 1 0.8641 2.7019 0.0952 6 6 2.8704 3.4551 -0.1251 7 7 4.1179 3.1445 -0.3672 8 14 2.3718 5.2464 0.0543 9 1 2.1059 5.8231 -1.2881 10 1 1.1439 5.3376 0.8844 11 1 3.4693 6.0025 0.7093 12 7 3.5490 0.6415 0.0059 13 7 3.5370 -0.6436 0.0044 14 6 2.2904 -1.0893 -0.0030 15 16 1.7874 -2.7780 -0.0070 16 6 3.4060 -3.5880 0.0009 17 6 3.2192 -5.0834 -0.0006 18 7 3.1394 -5.7210 1.1501 19 6 2.9708 -7.0330 1.1879 20 6 2.8890 -7.7368 -0.0033 21 6 2.9824 -7.0320 -1.1930 22 7 3.1456 -5.7195 -1.1525 23 1 -0.3633 -0.0001 -1.0278 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 4.7840 3.8444 -0.4539 27 1 3.9655 -3.2904 -0.8860 28 1 3.9562 -3.2918 0.8940 29 1 2.9017 -7.5488 2.1343 30 1 2.7551 -8.8085 -0.0043 31 1 2.9224 -7.5471 -2.1405 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116887281.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:19 Heat of formation + Delta-G solvation = 97.460485 kcal Electronic energy + Delta-G solvation = -17821.329962 eV Core-core repulsion = 14843.610008 eV Total energy + Delta-G solvation = -2977.719954 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.069 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.48490 -42.00988 -35.63790 -35.20437 -34.75630 -34.30397 -31.36984 -29.77810 -28.22975 -27.40531 -25.50926 -23.99088 -22.81996 -22.32892 -19.29983 -18.60696 -18.37127 -17.50584 -17.26877 -16.64825 -16.56654 -16.13909 -15.98510 -15.13420 -14.77425 -14.70894 -14.24276 -14.16762 -13.90844 -13.81772 -13.17188 -12.96096 -12.74954 -12.14432 -11.98810 -11.93320 -11.83871 -11.73000 -11.42488 -10.61131 -10.53896 -10.37078 -10.30320 -10.25254 -8.60366 -8.55588 -6.59428 -0.42748 0.16534 0.54122 1.11277 1.18130 1.42489 1.59054 1.61478 2.18673 2.42603 2.48509 2.67482 2.83662 3.16496 3.32824 3.76347 3.96655 4.06138 4.10398 4.22219 4.39296 4.43932 4.60127 4.60450 4.86121 4.87776 4.94504 5.30912 5.41021 5.54468 5.99654 6.04090 6.21479 6.74844 6.90551 7.04641 8.40239 8.60923 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.050230 B = 0.003615 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.298268 B = 7742.840296 C = 8007.930060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.521 5.521 3 C 0.321 3.679 4 C -0.472 4.472 5 H 0.105 0.895 6 C 0.030 3.970 7 N -0.789 5.789 8 Si 1.008 2.992 9 H -0.259 1.259 10 H -0.247 1.247 11 H -0.271 1.271 12 N -0.390 5.390 13 N -0.327 5.327 14 C 0.052 3.948 15 S 0.022 5.978 16 C -0.026 4.026 17 C 0.315 3.685 18 N -0.532 5.532 19 C 0.136 3.864 20 C -0.201 4.201 21 C 0.135 3.865 22 N -0.532 5.532 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.285 0.715 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.206 0.794 30 H 0.198 0.802 31 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.479 -17.791 0.668 19.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.222 5.222 3 C 0.074 3.926 4 C -0.512 4.512 5 H 0.123 0.877 6 C -0.191 4.191 7 N -0.414 5.414 8 Si 0.827 3.173 9 H -0.184 1.184 10 H -0.170 1.170 11 H -0.196 1.196 12 N -0.236 5.236 13 N -0.172 5.172 14 C -0.322 4.322 15 S 0.248 5.752 16 C -0.176 4.176 17 C 0.046 3.954 18 N -0.247 5.247 19 C -0.029 4.029 20 C -0.223 4.223 21 C -0.029 4.029 22 N -0.248 5.248 23 H 0.093 0.907 24 H 0.107 0.893 25 H 0.110 0.890 26 H 0.096 0.904 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.223 0.777 30 H 0.215 0.785 31 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.675 -17.270 0.636 18.526 hybrid contribution 0.026 0.635 -0.018 0.636 sum -6.649 -16.635 0.618 17.925 Atomic orbital electron populations 1.21868 0.75193 1.04502 1.03415 1.46366 1.08135 1.04271 1.63467 1.22056 0.85021 0.89887 0.95586 1.18642 0.96685 0.86380 1.49514 0.87685 1.27015 0.93794 1.06596 0.91705 1.70138 1.03389 1.37191 1.30686 0.84819 0.79300 0.73554 0.79635 1.18396 1.17032 1.19622 1.75274 1.17496 0.99103 1.31762 1.74401 1.17103 1.07181 1.18517 1.26239 0.91226 0.95191 1.19508 1.84210 1.08673 0.87321 1.94986 1.21779 0.98446 0.90006 1.07414 1.21709 0.94004 0.94747 0.84926 1.68190 1.13995 1.12624 1.29935 1.24030 0.89205 0.88231 1.01453 1.23444 1.00449 1.05116 0.93306 1.24026 0.89214 0.88213 1.01480 1.68188 1.14033 1.12675 1.29893 0.90725 0.89296 0.88958 0.90430 0.88110 0.88030 0.77724 0.78504 0.77758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.36 10.89 127.77 1.39 4.75 16 2 N -0.52 -26.11 3.26 -543.61 -1.77 -27.88 16 3 C 0.32 18.81 7.50 133.23 1.00 19.81 16 4 C -0.47 -25.66 9.05 23.09 0.21 -25.46 16 5 H 0.11 5.03 7.27 -2.92 -0.02 5.01 16 6 C 0.03 1.55 5.49 85.29 0.47 2.02 16 7 N -0.79 -45.45 12.00 21.85 0.26 -45.19 16 8 Si 1.01 38.17 29.57 68.60 2.03 40.20 16 9 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 10 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 11 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 12 N -0.39 -25.07 10.56 -55.01 -0.58 -25.65 16 13 N -0.33 -19.32 11.62 -56.17 -0.65 -19.97 16 14 C 0.05 2.66 8.09 179.18 1.45 4.11 16 15 S 0.02 0.87 21.77 -56.49 -1.23 -0.36 16 16 C -0.03 -0.97 5.66 71.24 0.40 -0.56 16 17 C 0.32 9.81 6.90 138.75 0.96 10.76 16 18 N -0.53 -14.66 10.33 -187.84 -1.94 -16.60 16 19 C 0.14 2.27 11.30 84.70 0.96 3.23 16 20 C -0.20 -2.34 10.17 22.44 0.23 -2.11 16 21 C 0.14 2.28 11.30 84.70 0.96 3.24 16 22 N -0.53 -14.75 10.33 -187.84 -1.94 -16.69 16 23 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 24 H 0.09 2.77 7.85 -2.39 -0.02 2.76 16 25 H 0.09 3.07 7.48 -2.39 -0.02 3.06 16 26 H 0.29 14.80 8.30 -92.71 -0.77 14.03 16 27 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 28 H 0.10 4.03 8.14 -2.40 -0.02 4.01 16 29 H 0.21 1.72 8.06 -2.91 -0.02 1.70 16 30 H 0.20 0.34 8.06 -2.91 -0.02 0.32 16 31 H 0.21 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -82.61 296.61 3.36 -79.25 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 1.17 Total: 13.12 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 8.02 Total: 19.78 kcal Atomic # 7 Polarization: -145.37 SS G_CDS: -6.62 Total: -151.99 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -1.23 Total: -0.36 kcal Total: -82.61 3.36 -79.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116887281.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.715 kcal (2) G-P(sol) polarization free energy of solvation -82.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds