Wall clock time and date at job start Mon Mar 30 2020 01:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86805 * 119.99721 * 2 1 4 4 H 1.48502 * 109.46565 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47165 * 300.00062 * 3 2 1 6 6 H 1.48501 * 109.46710 * 60.00457 * 3 2 1 7 7 C 1.40047 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99646 * 179.97438 * 7 2 1 9 9 C 1.46370 * 120.00214 * 0.02562 * 7 2 1 10 10 O 1.21684 * 120.00091 * 354.81715 * 9 7 2 11 11 N 1.34778 * 120.00354 * 174.82558 * 9 7 2 12 12 C 1.46393 * 119.69596 * 4.03048 * 11 9 7 13 13 C 1.53184 * 109.50008 * 244.32325 * 12 11 9 14 14 S 1.81658 * 108.95040 * 301.74153 * 13 12 11 15 15 O 1.42101 * 108.65251 * 301.21503 * 14 13 12 16 16 O 1.42100 * 108.72797 * 169.94568 * 14 13 12 17 17 C 1.81671 * 101.38995 * 55.56539 * 14 13 12 18 18 C 1.46380 * 119.70360 * 184.04692 * 11 9 7 19 19 H 1.08999 * 109.46348 * 235.68431 * 18 11 9 20 20 C 1.53008 * 109.46273 * 355.66270 * 18 11 9 21 21 C 1.52991 * 109.47150 * 290.03321 * 20 18 11 22 22 O 1.42905 * 109.46941 * 174.01029 * 21 20 18 23 23 H 0.96998 * 119.99885 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47064 * 124.31617 * 12 11 9 25 25 H 1.09001 * 109.46543 * 4.32931 * 12 11 9 26 26 H 1.09000 * 109.55764 * 181.89933 * 13 12 11 27 27 H 1.09003 * 109.56097 * 61.58216 * 13 12 11 28 28 H 1.08998 * 109.55494 * 184.60145 * 17 14 13 29 29 H 1.08991 * 109.55870 * 64.27740 * 17 14 13 30 30 H 1.08997 * 109.46991 * 170.02813 * 20 18 11 31 31 H 1.08998 * 109.46585 * 50.03595 * 20 18 11 32 32 H 1.08999 * 109.47175 * 294.00397 * 21 20 18 33 33 H 1.08995 * 109.47727 * 54.01016 * 21 20 18 34 34 H 0.96698 * 113.99814 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8819 2.3964 1.2126 7 6 2.0070 -1.2128 -0.0005 8 1 3.0871 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0017 10 8 0.0620 -2.4827 0.0930 11 7 1.9450 -3.6453 -0.1075 12 6 3.4087 -3.6405 -0.1317 13 6 3.8993 -4.1573 -1.4878 14 16 3.2451 -5.8311 -1.7530 15 8 3.6919 -6.6668 -0.6942 16 8 3.5030 -6.2140 -3.0970 17 6 1.4601 -5.5533 -1.5603 18 6 1.2023 -4.9034 -0.1974 19 1 1.5312 -5.5767 0.5941 20 6 -0.2940 -4.6246 -0.0404 21 6 -0.5869 -4.2105 1.4029 22 8 -1.9557 -3.8162 1.5169 23 1 -0.4850 0.8400 0.0004 24 1 3.7873 -4.2854 0.6613 25 1 3.7713 -2.6242 0.0225 26 1 4.9889 -4.1860 -1.4948 27 1 3.5451 -3.4973 -2.2797 28 1 0.9345 -6.5066 -1.6153 29 1 1.1060 -4.8934 -2.3521 30 1 -0.8586 -5.5251 -0.2819 31 1 -0.5864 -3.8204 -0.7157 32 1 -0.3947 -5.0521 2.0685 33 1 0.0561 -3.3748 1.6789 34 1 -2.2128 -3.5406 2.4074 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119714353.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:27 Heat of formation + Delta-G solvation = -109.093059 kcal Electronic energy + Delta-G solvation = -21176.535355 eV Core-core repulsion = 17817.964146 eV Total energy + Delta-G solvation = -3358.571209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.39722 -36.85554 -35.88773 -35.82146 -35.13651 -33.34870 -32.40611 -29.64165 -28.68482 -26.43677 -23.57055 -22.77526 -21.44761 -19.37369 -18.57747 -17.12091 -16.39300 -16.23199 -16.18158 -15.77161 -15.47887 -15.20361 -14.73224 -14.40135 -13.74438 -13.26403 -13.02881 -12.74799 -12.32373 -12.22546 -11.92973 -11.91139 -11.81957 -11.67925 -11.58189 -11.26461 -11.19164 -10.80399 -10.69947 -10.43052 -10.33817 -10.07852 -9.71764 -9.16683 -8.77458 -7.57668 -7.23144 -6.31025 -4.85795 0.22290 2.82973 3.00042 3.09904 3.12594 3.74447 3.84746 4.07965 4.14485 4.35167 4.67454 4.98048 4.99976 5.06500 5.23454 5.47796 5.53977 5.56264 5.88925 5.98313 6.06771 6.12715 6.17771 6.32199 6.47210 7.00952 7.14022 7.25811 7.37568 7.84976 8.03233 8.48219 8.82510 9.06017 10.31750 10.50978 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.017701 B = 0.007925 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.409763 B = 3532.356209 C = 4745.096467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.089 3.911 3 Si 0.905 3.095 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.075 0.925 9 C 0.544 3.456 10 O -0.534 6.534 11 N -0.649 5.649 12 C 0.129 3.871 13 C -0.614 4.614 14 S 2.412 3.588 15 O -0.946 6.946 16 O -0.955 6.955 17 C -0.611 4.611 18 C 0.170 3.830 19 H 0.073 0.927 20 C -0.107 4.107 21 C 0.100 3.900 22 O -0.566 6.566 23 H 0.270 0.730 24 H 0.070 0.930 25 H 0.121 0.879 26 H 0.134 0.866 27 H 0.138 0.862 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.033 0.967 31 H 0.130 0.870 32 H -0.002 1.002 33 H 0.077 0.923 34 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.867 -5.472 0.114 7.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.133 4.133 3 Si 0.730 3.270 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.352 3.648 10 O -0.417 6.417 11 N -0.388 5.388 12 C 0.003 3.997 13 C -0.746 4.746 14 S 2.597 3.403 15 O -0.943 6.943 16 O -0.952 6.952 17 C -0.743 4.743 18 C 0.064 3.936 19 H 0.090 0.910 20 C -0.144 4.144 21 C 0.023 3.977 22 O -0.369 6.369 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.139 0.861 26 H 0.152 0.848 27 H 0.156 0.844 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.051 0.949 31 H 0.147 0.853 32 H 0.016 0.984 33 H 0.095 0.905 34 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 4.491 -6.323 -0.675 7.785 hybrid contribution 0.249 1.526 0.531 1.634 sum 4.740 -4.798 -0.144 6.746 Atomic orbital electron populations 1.69995 1.06892 1.27586 1.34055 1.25702 0.94660 1.00287 0.92614 0.86348 0.80487 0.81822 0.78365 1.18755 1.20149 1.20101 1.21059 0.93641 0.89144 1.54242 0.90723 1.18266 0.87424 0.81913 0.77244 1.90692 1.13406 1.84959 1.52619 1.48337 1.04367 1.06175 1.79906 1.21144 0.82201 1.05366 0.90939 1.30534 1.11808 1.22818 1.09487 1.07991 0.79122 0.78337 0.74898 1.93552 1.79636 1.63936 1.57156 1.93557 1.84021 1.81559 1.36058 1.30621 1.24589 1.10602 1.08495 1.20415 0.95354 0.86793 0.91086 0.90961 1.22048 0.91181 1.01230 0.99967 1.22433 0.83420 0.96550 0.95310 1.86442 1.28032 1.88507 1.33932 0.91870 0.91204 0.86096 0.84764 0.84408 0.84815 0.84546 0.94859 0.85288 0.98369 0.90521 0.79230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.36 11.84 55.55 0.66 -19.70 16 2 C 0.09 2.20 5.50 -17.37 -0.10 2.10 16 3 Si 0.91 18.33 29.56 -169.99 -5.02 13.30 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.54 -13.24 8.84 -35.63 -0.31 -13.55 16 8 H 0.07 1.64 5.57 -52.48 -0.29 1.35 16 9 C 0.54 12.97 6.55 -12.99 -0.09 12.89 16 10 O -0.53 -14.12 8.06 -5.89 -0.05 -14.17 16 11 N -0.65 -12.34 2.78 -167.71 -0.47 -12.81 16 12 C 0.13 2.01 6.09 -4.00 -0.02 1.98 16 13 C -0.61 -7.95 6.55 37.25 0.24 -7.70 16 14 S 2.41 33.94 5.29 -107.50 -0.57 33.37 16 15 O -0.95 -15.49 18.02 -57.82 -1.04 -16.53 16 16 O -0.95 -15.90 18.10 -57.82 -1.05 -16.94 16 17 C -0.61 -8.73 5.81 37.25 0.22 -8.51 16 18 C 0.17 2.94 2.66 -67.90 -0.18 2.75 16 19 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 20 C -0.11 -2.11 4.53 -26.73 -0.12 -2.23 16 21 C 0.10 2.04 5.80 37.15 0.22 2.26 16 22 O -0.57 -11.81 13.57 -46.33 -0.63 -12.44 16 23 H 0.27 6.70 8.29 -40.82 -0.34 6.37 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.12 1.93 5.17 -51.93 -0.27 1.67 16 26 H 0.13 1.35 8.14 -51.93 -0.42 0.92 16 27 H 0.14 1.76 8.14 -51.93 -0.42 1.33 16 28 H 0.13 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.14 1.92 8.14 -51.93 -0.42 1.50 16 30 H 0.03 0.60 8.11 -51.93 -0.42 0.17 16 31 H 0.13 3.04 5.65 -54.22 -0.31 2.74 16 32 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 33 H 0.08 1.78 5.37 -51.93 -0.28 1.50 16 34 H 0.36 5.89 9.12 45.56 0.42 6.30 16 LS Contribution 285.13 15.07 4.30 4.30 Total: -1.00 -33.63 285.13 -7.26 -40.89 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -3.24 Total: 10.75 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -0.15 Total: -10.01 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.19 Total: -32.51 kcal Atomic # 8 Polarization: -57.31 SS G_CDS: -2.76 Total: -60.08 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.30 kcal Atomic # 16 Polarization: 33.94 SS G_CDS: -0.57 Total: 33.37 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.63 -7.26 -40.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119714353.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.208 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds