Wall clock time and date at job start Mon Mar 30 2020 01:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86805 * 119.99721 * 2 1 4 4 H 1.48502 * 109.46565 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47165 * 300.00062 * 3 2 1 6 6 H 1.48501 * 109.46710 * 60.00457 * 3 2 1 7 7 C 1.40047 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99646 * 179.97438 * 7 2 1 9 9 C 1.46370 * 120.00214 * 0.02562 * 7 2 1 10 10 O 1.21684 * 120.00091 * 354.81715 * 9 7 2 11 11 N 1.34778 * 120.00354 * 174.82558 * 9 7 2 12 12 C 1.46393 * 119.69596 * 4.03048 * 11 9 7 13 13 C 1.53184 * 109.50008 * 244.32325 * 12 11 9 14 14 S 1.81658 * 108.95040 * 301.74153 * 13 12 11 15 15 O 1.42101 * 108.65251 * 301.21503 * 14 13 12 16 16 O 1.42100 * 108.72797 * 169.94568 * 14 13 12 17 17 C 1.81671 * 101.38995 * 55.56539 * 14 13 12 18 18 C 1.46380 * 119.70360 * 184.04692 * 11 9 7 19 19 H 1.08999 * 109.46348 * 235.68431 * 18 11 9 20 20 C 1.53008 * 109.46273 * 355.66270 * 18 11 9 21 21 C 1.52991 * 109.47150 * 290.03321 * 20 18 11 22 22 O 1.42905 * 109.46941 * 174.01029 * 21 20 18 23 23 H 0.96998 * 119.99885 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47064 * 124.31617 * 12 11 9 25 25 H 1.09001 * 109.46543 * 4.32931 * 12 11 9 26 26 H 1.09000 * 109.55764 * 181.89933 * 13 12 11 27 27 H 1.09003 * 109.56097 * 61.58216 * 13 12 11 28 28 H 1.08998 * 109.55494 * 184.60145 * 17 14 13 29 29 H 1.08991 * 109.55870 * 64.27740 * 17 14 13 30 30 H 1.08997 * 109.46991 * 170.02813 * 20 18 11 31 31 H 1.08998 * 109.46585 * 50.03595 * 20 18 11 32 32 H 1.08999 * 109.47175 * 294.00397 * 21 20 18 33 33 H 1.08995 * 109.47727 * 54.01016 * 21 20 18 34 34 H 0.96698 * 113.99814 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8819 2.3964 1.2126 7 6 2.0070 -1.2128 -0.0005 8 1 3.0871 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0017 10 8 0.0620 -2.4827 0.0930 11 7 1.9450 -3.6453 -0.1075 12 6 3.4087 -3.6405 -0.1317 13 6 3.8993 -4.1573 -1.4878 14 16 3.2451 -5.8311 -1.7530 15 8 3.6919 -6.6668 -0.6942 16 8 3.5030 -6.2140 -3.0970 17 6 1.4601 -5.5533 -1.5603 18 6 1.2023 -4.9034 -0.1974 19 1 1.5312 -5.5767 0.5941 20 6 -0.2940 -4.6246 -0.0404 21 6 -0.5869 -4.2105 1.4029 22 8 -1.9557 -3.8162 1.5169 23 1 -0.4850 0.8400 0.0004 24 1 3.7873 -4.2854 0.6613 25 1 3.7713 -2.6242 0.0225 26 1 4.9889 -4.1860 -1.4948 27 1 3.5451 -3.4973 -2.2797 28 1 0.9345 -6.5066 -1.6153 29 1 1.1060 -4.8934 -2.3521 30 1 -0.8586 -5.5251 -0.2819 31 1 -0.5864 -3.8204 -0.7157 32 1 -0.3947 -5.0521 2.0685 33 1 0.0561 -3.3748 1.6789 34 1 -2.2128 -3.5406 2.4074 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119714353.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:27 Heat of formation + Delta-G solvation = -137.783366 kcal Electronic energy + Delta-G solvation = -21177.779460 eV Core-core repulsion = 17817.964146 eV Total energy + Delta-G solvation = -3359.815314 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.96428 -38.10762 -37.43074 -37.10224 -36.74557 -34.93233 -34.04187 -31.00576 -30.10195 -28.22728 -24.90415 -24.19532 -23.04272 -20.97195 -19.78131 -18.67640 -18.07677 -17.75168 -17.37070 -17.10474 -16.79224 -16.63408 -16.29744 -15.81493 -15.32577 -14.66615 -14.54599 -14.19836 -13.70174 -13.58062 -13.34640 -13.19618 -13.16465 -13.04503 -13.02697 -12.84449 -12.71483 -12.35949 -12.25704 -11.92317 -11.85847 -11.55717 -11.01298 -10.95686 -10.40785 -9.18952 -8.99212 -8.12735 -6.74476 -0.91417 1.40876 1.44598 1.58082 1.71013 2.22558 2.48906 2.56937 2.70101 2.99287 3.43007 3.57835 3.69177 3.82645 3.97485 4.17301 4.26847 4.36439 4.49645 4.52624 4.68910 4.81319 4.87450 4.91590 5.05530 5.37857 5.47141 5.62337 5.71669 6.21342 6.29718 6.96529 7.05572 7.36698 8.53406 8.72584 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.017701 B = 0.007925 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.409763 B = 3532.356209 C = 4745.096467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.038 3.962 3 Si 0.980 3.020 4 H -0.245 1.245 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.566 4.566 8 H 0.096 0.904 9 C 0.534 3.466 10 O -0.567 6.567 11 N -0.649 5.649 12 C 0.120 3.880 13 C -0.604 4.604 14 S 2.439 3.561 15 O -0.964 6.964 16 O -0.978 6.978 17 C -0.613 4.613 18 C 0.166 3.834 19 H 0.092 0.908 20 C -0.104 4.104 21 C 0.103 3.897 22 O -0.587 6.587 23 H 0.270 0.730 24 H 0.092 0.908 25 H 0.117 0.883 26 H 0.171 0.829 27 H 0.141 0.859 28 H 0.159 0.841 29 H 0.135 0.865 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.027 0.973 33 H 0.044 0.956 34 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.913 -6.121 0.047 9.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.168 1.168 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.603 4.603 8 H 0.113 0.887 9 C 0.340 3.660 10 O -0.451 6.451 11 N -0.387 5.387 12 C -0.005 4.005 13 C -0.737 4.737 14 S 2.626 3.374 15 O -0.962 6.962 16 O -0.975 6.975 17 C -0.743 4.743 18 C 0.061 3.939 19 H 0.110 0.890 20 C -0.141 4.141 21 C 0.026 3.974 22 O -0.393 6.393 23 H 0.080 0.920 24 H 0.110 0.890 25 H 0.135 0.865 26 H 0.189 0.811 27 H 0.160 0.840 28 H 0.177 0.823 29 H 0.154 0.846 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 6.568 -7.019 -0.739 9.642 hybrid contribution -0.407 1.648 0.592 1.798 sum 6.161 -5.371 -0.147 8.175 Atomic orbital electron populations 1.70160 1.08975 1.28441 1.36560 1.26712 0.95299 1.04151 0.91681 0.85217 0.79857 0.76894 0.77924 1.16826 1.20257 1.20230 1.21588 0.94891 0.89756 1.54037 0.88650 1.18465 0.87234 0.83367 0.76933 1.90710 1.14887 1.86062 1.53452 1.48126 1.05899 1.05553 1.79136 1.21361 0.80011 1.05933 0.93157 1.30459 1.14110 1.21185 1.07942 1.07170 0.78294 0.78301 0.73679 1.93525 1.79854 1.65183 1.57607 1.93530 1.84250 1.82405 1.37327 1.30624 1.25582 1.11602 1.06543 1.20506 0.93611 0.86389 0.93422 0.89050 1.21888 0.93330 1.00374 0.98552 1.22341 0.82533 0.96214 0.96339 1.86398 1.28370 1.88726 1.35792 0.91990 0.88993 0.86523 0.81106 0.84034 0.82274 0.84646 0.92987 0.89483 0.95468 0.93802 0.77294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.19 11.84 21.84 0.26 -44.94 16 2 C 0.04 1.88 5.50 85.30 0.47 2.35 16 3 Si 0.98 37.58 29.56 68.60 2.03 39.61 16 4 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 5 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 6 H -0.28 -10.56 7.11 99.48 0.71 -9.86 16 7 C -0.57 -27.52 8.84 24.83 0.22 -27.30 16 8 H 0.10 4.06 5.57 -2.91 -0.02 4.04 16 9 C 0.53 25.78 6.55 86.36 0.57 26.35 16 10 O -0.57 -31.03 8.06 6.31 0.05 -30.98 16 11 N -0.65 -24.03 2.78 -802.74 -2.23 -26.27 16 12 C 0.12 3.42 6.09 86.46 0.53 3.94 16 13 C -0.60 -13.68 6.55 72.04 0.47 -13.20 16 14 S 2.44 61.97 5.29 -56.49 -0.30 61.67 16 15 O -0.96 -28.68 18.02 -127.38 -2.30 -30.97 16 16 O -0.98 -30.21 18.10 -127.38 -2.31 -32.52 16 17 C -0.61 -16.25 5.81 72.04 0.42 -15.83 16 18 C 0.17 5.50 2.66 45.08 0.12 5.62 16 19 H 0.09 2.69 8.11 -2.39 -0.02 2.68 16 20 C -0.10 -4.08 4.53 30.59 0.14 -3.94 16 21 C 0.10 4.21 5.80 71.98 0.42 4.63 16 22 O -0.59 -24.86 13.57 -138.37 -1.88 -26.74 16 23 H 0.27 13.96 8.29 -92.71 -0.77 13.19 16 24 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.12 3.46 5.17 -2.39 -0.01 3.45 16 26 H 0.17 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.14 3.21 8.14 -2.39 -0.02 3.20 16 28 H 0.16 3.36 8.14 -2.39 -0.02 3.34 16 29 H 0.14 3.66 8.14 -2.39 -0.02 3.64 16 30 H 0.05 1.81 8.11 -2.39 -0.02 1.79 16 31 H 0.09 4.25 5.65 -38.76 -0.22 4.03 16 32 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.04 2.09 5.37 -2.40 -0.01 2.08 16 34 H 0.38 12.51 9.12 -74.06 -0.68 11.84 16 Total: -1.00 -73.98 285.13 -3.07 -77.04 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: 0.26 Total: 31.47 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 3.35 Total: -17.38 kcal Atomic # 7 Polarization: -69.23 SS G_CDS: -1.98 Total: -71.21 kcal Atomic # 8 Polarization: -114.78 SS G_CDS: -6.43 Total: -121.20 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Atomic # 16 Polarization: 61.97 SS G_CDS: -0.30 Total: 61.67 kcal Total: -73.98 -3.07 -77.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119714353.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.740 kcal (2) G-P(sol) polarization free energy of solvation -73.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds