Wall clock time and date at job start Mon Mar 30 2020 01:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47049 * 89.99950 * 8 6 4 10 10 H 1.48499 * 109.47170 * 209.99777 * 8 6 4 11 11 H 1.48502 * 109.47245 * 329.99617 * 8 6 4 12 12 O 1.45200 * 109.47003 * 119.99974 * 2 1 3 13 13 C 1.34234 * 116.99857 * 270.00226 * 12 2 1 14 14 O 1.20823 * 120.00331 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99706 * 179.97438 * 13 12 2 16 16 C 1.53944 * 113.74619 * 276.67264 * 15 13 12 17 17 N 1.47574 * 86.11863 * 222.05059 * 16 15 13 18 18 S 1.65605 * 134.49376 * 204.63804 * 17 16 15 19 19 C 1.81399 * 104.45061 * 270.00007 * 18 17 16 20 20 O 1.42104 * 104.27237 * 26.06748 * 18 17 16 21 21 O 1.42101 * 104.27756 * 153.92538 * 18 17 16 22 22 C 1.47578 * 91.01959 * 24.63788 * 17 16 15 23 23 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 26 26 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 27 27 H 1.09000 * 112.94769 * 48.40789 * 15 13 12 28 28 H 1.09006 * 113.76434 * 336.35109 * 16 15 13 29 29 H 1.08996 * 113.77411 * 107.74484 * 16 15 13 30 30 H 1.09003 * 109.47409 * 59.99473 * 19 18 17 31 31 H 1.08997 * 109.47495 * 179.97438 * 19 18 17 32 32 H 1.08994 * 109.47120 * 299.99986 * 19 18 17 33 33 H 1.08995 * 113.77327 * 221.06385 * 22 17 16 34 34 H 1.09002 * 113.77296 * 89.65952 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.3449 -2.1616 -4.4123 10 1 2.4874 -0.1403 -5.1119 11 1 3.6310 -1.7566 -3.7118 12 8 2.0140 -0.6845 1.1856 13 6 2.2171 0.0641 2.2812 14 8 1.9982 1.2519 2.2504 15 6 2.7182 -0.5772 3.5495 16 6 1.6074 -1.2194 4.4002 17 7 2.2987 -0.6331 5.5647 18 16 2.3708 -1.0009 7.1778 19 6 1.0060 -0.0624 7.9175 20 8 2.1036 -2.3955 7.2314 21 8 3.6225 -0.4779 7.6008 22 6 2.9000 0.4126 4.7145 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7083 1.1609 -3.4845 27 1 3.5788 -1.2259 3.3865 28 1 0.6177 -0.7997 4.2196 29 1 1.6176 -2.3092 4.3860 30 1 0.0635 -0.3778 7.4699 31 1 0.9778 -0.2474 8.9913 32 1 1.1563 1.0017 7.7357 33 1 3.9424 0.6257 4.9513 34 1 2.2901 1.3117 4.6263 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122428088.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:03 Heat of formation + Delta-G solvation = -146.458139 kcal Electronic energy + Delta-G solvation = -19677.448008 eV Core-core repulsion = 16317.256528 eV Total energy + Delta-G solvation = -3360.191481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.66845 -39.65327 -38.15847 -37.38290 -37.02458 -35.29029 -31.81387 -30.49032 -29.97975 -27.43555 -27.25831 -24.98837 -22.71159 -20.85183 -19.75808 -19.08070 -18.54173 -18.52102 -17.58196 -17.21644 -17.04302 -16.65945 -16.32175 -15.37496 -15.00220 -14.82723 -14.29765 -14.01258 -13.97427 -13.86694 -13.68490 -13.45969 -13.21230 -13.13482 -13.12251 -12.98490 -12.78746 -12.51818 -12.36095 -12.16077 -12.03336 -12.00779 -11.53389 -11.21824 -10.95100 -10.56397 -10.12667 -8.26439 -6.42553 -0.75587 1.31029 1.44145 1.45706 1.47384 1.57171 2.08152 2.44623 2.95427 2.96730 3.04670 3.32204 3.39414 3.96497 4.04958 4.06730 4.20007 4.46772 4.52512 4.59802 4.66830 4.81107 4.83101 4.87982 4.92901 5.04420 5.21042 5.30948 5.52628 5.68547 5.96766 6.13247 6.62766 6.99911 7.29646 8.80838 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.046336 B = 0.003535 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.134635 B = 7919.712665 C = 8047.508746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.216 3.784 3 H 0.010 0.990 4 C -0.548 4.548 5 H 0.067 0.933 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.980 3.020 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.266 1.266 12 O -0.360 6.360 13 C 0.459 3.541 14 O -0.546 6.546 15 C -0.120 4.120 16 C 0.148 3.852 17 N -1.039 6.039 18 S 2.644 3.356 19 C -0.654 4.654 20 O -0.987 6.987 21 O -0.989 6.989 22 C 0.147 3.853 23 H 0.078 0.922 24 H 0.046 0.954 25 H 0.028 0.972 26 H 0.270 0.730 27 H 0.148 0.852 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.106 0.894 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.825 -2.246 18.164 18.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.162 3.838 3 H 0.028 0.972 4 C -0.586 4.586 5 H 0.085 0.915 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.803 3.197 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.191 1.191 12 O -0.276 6.276 13 C 0.303 3.697 14 O -0.437 6.437 15 C -0.141 4.141 16 C 0.022 3.978 17 N -0.877 5.877 18 S 2.743 3.257 19 C -0.808 4.808 20 O -0.978 6.978 21 O -0.980 6.980 22 C 0.022 3.978 23 H 0.096 0.904 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.166 0.834 28 H 0.119 0.881 29 H 0.131 0.869 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.162 0.838 33 H 0.125 0.875 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.339 -2.424 18.626 18.786 hybrid contribution -0.404 0.518 -1.026 1.219 sum -0.743 -1.905 17.599 17.718 Atomic orbital electron populations 1.21971 0.96559 1.00460 1.00937 1.20346 0.92145 0.92083 0.79183 0.97241 1.21326 1.33308 1.13862 0.90101 0.91493 1.25775 0.94770 0.95630 1.02039 1.70008 1.36652 1.23631 1.25138 0.85228 0.79010 0.78120 0.77335 1.19296 1.20456 1.19053 1.86496 1.75902 1.43793 1.21424 1.24064 0.73846 0.85624 0.86196 1.90588 1.49923 1.18125 1.85032 1.23298 1.02844 1.00899 0.87108 1.22739 0.95149 1.01073 0.78799 1.60088 1.62411 1.42811 1.22402 1.03780 0.76231 0.74224 0.71498 1.30406 1.19494 1.16306 1.14585 1.93564 1.87242 1.31591 1.85447 1.93559 1.41636 1.81912 1.80865 1.22778 1.01162 0.90856 0.82968 0.90379 0.93505 0.95262 0.92063 0.83386 0.88066 0.86950 0.83749 0.83500 0.83838 0.87531 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.91 9.33 71.98 0.67 -6.24 16 2 C 0.22 11.35 2.56 29.85 0.08 11.42 16 3 H 0.01 0.58 7.16 -2.39 -0.02 0.56 16 4 C -0.55 -30.32 8.90 25.60 0.23 -30.09 16 5 H 0.07 3.63 7.81 -2.91 -0.02 3.61 16 6 C 0.02 0.95 5.30 84.66 0.45 1.40 16 7 N -0.92 -51.46 11.32 21.45 0.24 -51.22 16 8 Si 0.98 42.08 29.54 68.60 2.03 44.11 16 9 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 10 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 12 O -0.36 -16.10 9.86 -51.46 -0.51 -16.61 16 13 C 0.46 17.06 7.47 71.24 0.53 17.59 16 14 O -0.55 -23.28 15.12 21.97 0.33 -22.95 16 15 C -0.12 -2.97 4.45 -10.88 -0.05 -3.02 16 16 C 0.15 2.90 8.47 86.48 0.73 3.64 16 17 N -1.04 -19.18 3.99 -529.85 -2.12 -21.29 16 18 S 2.64 45.66 6.57 -56.49 -0.37 45.29 16 19 C -0.65 -5.36 10.99 113.37 1.25 -4.11 16 20 O -0.99 -23.93 18.02 -127.65 -2.30 -26.24 16 21 O -0.99 -24.09 18.02 -127.65 -2.30 -26.39 16 22 C 0.15 3.02 8.26 86.48 0.71 3.74 16 23 H 0.08 4.16 6.07 -2.39 -0.01 4.14 16 24 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 27 H 0.15 3.23 8.14 -2.39 -0.02 3.21 16 28 H 0.10 1.79 8.09 -2.38 -0.02 1.77 16 29 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.15 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.10 2.10 7.41 -2.39 -0.02 2.08 16 Total: -1.00 -74.94 309.47 0.71 -74.24 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 1.10 Total: 6.73 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 4.60 Total: -5.67 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -1.87 Total: -72.51 kcal Atomic # 8 Polarization: -87.41 SS G_CDS: -4.78 Total: -92.18 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 45.66 SS G_CDS: -0.37 Total: 45.29 kcal Total: -74.94 0.71 -74.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122428088.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.223 kcal (2) G-P(sol) polarization free energy of solvation -74.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds