Wall clock time and date at job start Mon Mar 30 2020 01:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 O 1.45198 * 109.46967 * 240.00458 * 2 1 3 13 13 C 1.34231 * 117.00230 * 90.00189 * 12 2 1 14 14 O 1.20830 * 119.99768 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00448 * 179.97438 * 13 12 2 16 16 C 1.53940 * 113.74041 * 278.74142 * 15 13 12 17 17 N 1.47815 * 86.03590 * 222.07955 * 16 15 13 18 18 S 1.65600 * 134.45773 * 204.64289 * 17 16 15 19 19 C 1.81401 * 104.44809 * 269.87042 * 18 17 16 20 20 O 1.42099 * 104.27641 * 25.94125 * 18 17 16 21 21 O 1.42093 * 104.27739 * 153.80019 * 18 17 16 22 22 C 1.47575 * 91.04993 * 24.55116 * 17 16 15 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09007 * 112.94374 * 50.33195 * 15 13 12 28 28 H 1.08998 * 113.77327 * 336.34934 * 16 15 13 29 29 H 1.09004 * 113.77187 * 107.74532 * 16 15 13 30 30 H 1.09001 * 109.47098 * 60.00211 * 19 18 17 31 31 H 1.09010 * 109.46989 * 179.97438 * 19 18 17 32 32 H 1.08995 * 109.46964 * 299.99967 * 19 18 17 33 33 H 1.09001 * 113.76912 * 221.15381 * 22 17 16 34 34 H 1.08999 * 113.77136 * 89.75340 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0642 -2.2811 14 8 1.9974 1.2519 -2.2505 15 6 2.7193 -0.5767 -3.5492 16 6 4.2425 -0.7982 -3.5706 17 7 4.1878 -0.3288 -4.9712 18 16 5.1383 -0.5552 -6.3082 19 6 6.3455 0.7970 -6.2397 20 8 5.7752 -1.8044 -6.0779 21 8 4.2508 -0.3763 -7.4034 22 6 2.9456 0.4203 -4.7002 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 0.7089 1.1611 3.4845 27 1 2.1438 -1.4564 -3.8375 28 1 4.7927 -0.1328 -2.9053 29 1 4.5361 -1.8429 -3.4674 30 1 6.9193 0.7253 -5.3157 31 1 7.0205 0.7251 -7.0926 32 1 5.8225 1.7528 -6.2693 33 1 2.2055 0.3468 -5.4970 34 1 3.1139 1.4446 -4.3674 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122428089.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:04 Heat of formation + Delta-G solvation = -121.023279 kcal Electronic energy + Delta-G solvation = -19678.685614 eV Core-core repulsion = 16319.597072 eV Total energy + Delta-G solvation = -3359.088543 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.30618 -38.37757 -37.27325 -36.13947 -35.68160 -33.30185 -30.08717 -29.72729 -28.90548 -26.39010 -25.36538 -23.64226 -20.99608 -19.45261 -18.92214 -17.90699 -17.36793 -16.69306 -16.42346 -16.25647 -15.71582 -15.12153 -14.61047 -14.22060 -14.11163 -13.48170 -13.42947 -13.21190 -12.81390 -12.58187 -12.30615 -12.27845 -12.21355 -11.77389 -11.66562 -11.30681 -11.23617 -11.11138 -11.03907 -10.86316 -10.43520 -10.31578 -9.72349 -9.60113 -9.27072 -8.96284 -8.52867 -6.22227 -4.29476 -0.00622 2.27939 2.79201 3.23982 3.27770 3.29532 3.53502 3.68946 3.77684 4.24250 4.30168 4.35442 4.55915 4.58164 5.05189 5.10980 5.30839 5.37025 5.37307 5.50438 5.61076 5.66865 5.99311 6.18462 6.58865 6.84404 6.86237 7.10316 7.54999 7.67703 7.87548 8.09107 8.55072 8.82328 9.36247 10.85056 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.035628 B = 0.003749 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.703691 B = 7466.455021 C = 7853.713118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.047 0.953 4 C -0.523 4.523 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.285 1.285 10 H -0.274 1.274 11 H -0.274 1.274 12 O -0.352 6.352 13 C 0.461 3.539 14 O -0.518 6.518 15 C -0.118 4.118 16 C 0.145 3.855 17 N -1.040 6.040 18 S 2.633 3.367 19 C -0.677 4.677 20 O -0.952 6.952 21 O -0.953 6.953 22 C 0.144 3.856 23 H 0.037 0.963 24 H 0.099 0.901 25 H 0.016 0.984 26 H 0.267 0.733 27 H 0.133 0.867 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.808 -0.346 -14.567 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.561 4.561 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.211 1.211 10 H -0.199 1.199 11 H -0.200 1.200 12 O -0.267 6.267 13 C 0.303 3.697 14 O -0.408 6.408 15 C -0.140 4.140 16 C 0.020 3.980 17 N -0.879 5.879 18 S 2.728 3.272 19 C -0.827 4.827 20 O -0.943 6.943 21 O -0.944 6.944 22 C 0.019 3.981 23 H 0.056 0.944 24 H 0.118 0.882 25 H 0.035 0.965 26 H 0.077 0.923 27 H 0.151 0.849 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.113 0.887 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.709 -0.584 -15.192 17.046 hybrid contribution 0.575 0.432 1.173 1.376 sum 8.284 -0.152 -14.019 16.284 Atomic orbital electron populations 1.22167 0.97507 1.00186 1.01445 1.20666 0.91448 0.93893 0.77745 0.93516 1.20989 1.32666 1.13549 0.88868 0.91282 1.24887 0.94887 0.95068 0.99081 1.69887 1.35958 1.22518 1.24333 0.86325 0.79197 0.79573 0.80983 1.21061 1.19906 1.19987 1.86503 1.75328 1.43591 1.21310 1.22985 0.74946 0.85855 0.85960 1.90610 1.48704 1.16826 1.84673 1.23050 0.97980 1.01316 0.91673 1.22723 0.93693 1.01968 0.79651 1.60329 1.38562 1.64587 1.24418 1.04255 0.74619 0.75932 0.72416 1.30634 1.19030 1.21673 1.11328 1.93610 1.77438 1.38449 1.84759 1.93602 1.62434 1.87343 1.51014 1.22754 0.83715 0.96180 0.95423 0.94369 0.88238 0.96482 0.92316 0.84908 0.88940 0.88031 0.85414 0.85669 0.85438 0.88658 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 9.33 37.16 0.35 -3.46 16 2 C 0.21 5.51 2.56 -27.89 -0.07 5.44 16 3 H 0.05 1.32 7.16 -51.93 -0.37 0.95 16 4 C -0.52 -14.15 8.90 -34.44 -0.31 -14.46 16 5 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.61 11.32 55.43 0.63 -23.99 16 8 Si 0.91 20.53 29.54 -169.99 -5.02 15.50 16 9 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 O -0.35 -7.76 9.86 -39.26 -0.39 -8.15 16 13 C 0.46 8.55 7.46 36.00 0.27 8.82 16 14 O -0.52 -10.91 15.13 -18.75 -0.28 -11.19 16 15 C -0.12 -1.53 4.44 -90.85 -0.40 -1.93 16 16 C 0.14 1.60 8.48 -2.84 -0.02 1.57 16 17 N -1.04 -10.71 4.00 -118.63 -0.47 -11.19 16 18 S 2.63 25.50 6.57 -107.50 -0.71 24.80 16 19 C -0.68 -4.19 10.99 101.05 1.11 -3.08 16 20 O -0.95 -12.32 18.02 -57.54 -1.04 -13.35 16 21 O -0.95 -12.21 18.02 -57.54 -1.04 -13.24 16 22 C 0.14 1.58 8.25 -2.97 -0.02 1.56 16 23 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.10 2.62 6.07 -51.93 -0.32 2.30 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.13 1.50 8.14 -51.93 -0.42 1.07 16 28 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 29 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.13 0.69 8.14 -51.92 -0.42 0.26 16 31 H 0.12 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.13 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 1.10 7.44 -51.93 -0.39 0.71 16 LS Contribution 309.51 15.07 4.66 4.66 Total: -1.00 -34.24 309.51 -7.27 -41.51 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -4.42 Total: -1.42 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 0.80 Total: -3.94 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.15 Total: -35.18 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -2.74 Total: -45.94 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 25.50 SS G_CDS: -0.71 Total: 24.80 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.24 -7.27 -41.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122428089.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.513 kcal (2) G-P(sol) polarization free energy of solvation -34.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds