Wall clock time and date at job start Mon Mar 30 2020 01:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 O 1.45198 * 109.46967 * 240.00458 * 2 1 3 13 13 C 1.34231 * 117.00230 * 90.00189 * 12 2 1 14 14 O 1.20830 * 119.99768 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00448 * 179.97438 * 13 12 2 16 16 C 1.53940 * 113.74041 * 278.74142 * 15 13 12 17 17 N 1.47815 * 86.03590 * 222.07955 * 16 15 13 18 18 S 1.65600 * 134.45773 * 204.64289 * 17 16 15 19 19 C 1.81401 * 104.44809 * 269.87042 * 18 17 16 20 20 O 1.42099 * 104.27641 * 25.94125 * 18 17 16 21 21 O 1.42093 * 104.27739 * 153.80019 * 18 17 16 22 22 C 1.47575 * 91.04993 * 24.55116 * 17 16 15 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09007 * 112.94374 * 50.33195 * 15 13 12 28 28 H 1.08998 * 113.77327 * 336.34934 * 16 15 13 29 29 H 1.09004 * 113.77187 * 107.74532 * 16 15 13 30 30 H 1.09001 * 109.47098 * 60.00211 * 19 18 17 31 31 H 1.09010 * 109.46989 * 179.97438 * 19 18 17 32 32 H 1.08995 * 109.46964 * 299.99967 * 19 18 17 33 33 H 1.09001 * 113.76912 * 221.15381 * 22 17 16 34 34 H 1.08999 * 113.77136 * 89.75340 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0642 -2.2811 14 8 1.9974 1.2519 -2.2505 15 6 2.7193 -0.5767 -3.5492 16 6 4.2425 -0.7982 -3.5706 17 7 4.1878 -0.3288 -4.9712 18 16 5.1383 -0.5552 -6.3082 19 6 6.3455 0.7970 -6.2397 20 8 5.7752 -1.8044 -6.0779 21 8 4.2508 -0.3763 -7.4034 22 6 2.9456 0.4203 -4.7002 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 0.7089 1.1611 3.4845 27 1 2.1438 -1.4564 -3.8375 28 1 4.7927 -0.1328 -2.9053 29 1 4.5361 -1.8429 -3.4674 30 1 6.9193 0.7253 -5.3157 31 1 7.0205 0.7251 -7.0926 32 1 5.8225 1.7528 -6.2693 33 1 2.2055 0.3468 -5.4970 34 1 3.1139 1.4446 -4.3674 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122428089.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:04 Heat of formation + Delta-G solvation = -146.360610 kcal Electronic energy + Delta-G solvation = -19679.784323 eV Core-core repulsion = 16319.597072 eV Total energy + Delta-G solvation = -3360.187252 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.65848 -39.63884 -38.15905 -37.38239 -37.02660 -35.28447 -31.81428 -30.48897 -29.97839 -27.41894 -27.26939 -25.00336 -22.67489 -20.89224 -19.75255 -19.07009 -18.55106 -18.47641 -17.61378 -17.16595 -17.06397 -16.68320 -16.30140 -15.36512 -15.05603 -14.75870 -14.19137 -14.12363 -13.97914 -13.95387 -13.62386 -13.41884 -13.21396 -13.18420 -13.12722 -12.91863 -12.78587 -12.56411 -12.34480 -12.15395 -12.03986 -12.01427 -11.53272 -11.21296 -10.95449 -10.55783 -10.12801 -8.25430 -6.41704 -0.75534 1.31613 1.44598 1.47401 1.48341 1.56425 2.07603 2.45440 2.95115 2.96440 3.05709 3.32106 3.39997 3.96821 4.04567 4.06343 4.19004 4.46973 4.52676 4.58975 4.67099 4.80466 4.82472 4.88347 4.92557 5.04075 5.19984 5.31020 5.52872 5.67630 5.96368 6.13462 6.63518 6.99975 7.30362 8.81753 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.035628 B = 0.003749 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.703691 B = 7466.455021 C = 7853.713118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.217 3.783 3 H 0.012 0.988 4 C -0.547 4.547 5 H 0.069 0.931 6 C 0.018 3.982 7 N -0.917 5.917 8 Si 0.980 3.020 9 H -0.280 1.280 10 H -0.266 1.266 11 H -0.267 1.267 12 O -0.360 6.360 13 C 0.459 3.541 14 O -0.546 6.546 15 C -0.118 4.118 16 C 0.146 3.854 17 N -1.040 6.040 18 S 2.645 3.355 19 C -0.655 4.655 20 O -0.988 6.988 21 O -0.988 6.988 22 C 0.148 3.852 23 H 0.044 0.956 24 H 0.079 0.921 25 H 0.025 0.975 26 H 0.270 0.730 27 H 0.152 0.848 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.109 0.891 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.173 -0.699 -15.026 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.163 3.837 3 H 0.030 0.970 4 C -0.585 4.585 5 H 0.087 0.913 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.803 3.197 9 H -0.205 1.205 10 H -0.190 1.190 11 H -0.192 1.192 12 O -0.276 6.276 13 C 0.302 3.698 14 O -0.437 6.437 15 C -0.140 4.140 16 C 0.021 3.979 17 N -0.878 5.878 18 S 2.743 3.257 19 C -0.809 4.809 20 O -0.979 6.979 21 O -0.979 6.979 22 C 0.023 3.977 23 H 0.063 0.937 24 H 0.098 0.902 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.169 0.831 28 H 0.117 0.883 29 H 0.130 0.870 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.162 0.838 33 H 0.127 0.873 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.048 -0.971 -15.678 18.127 hybrid contribution 0.202 0.625 1.222 1.387 sum 9.249 -0.346 -14.456 17.165 Atomic orbital electron populations 1.21997 0.96970 1.00344 1.00864 1.20332 0.91876 0.92214 0.79234 0.97038 1.21291 1.33329 1.13908 0.89951 0.91270 1.25785 0.94744 0.95627 1.02066 1.70010 1.36643 1.23683 1.25184 0.85277 0.78868 0.78583 0.76953 1.20515 1.19035 1.19206 1.86494 1.75822 1.43770 1.21498 1.24079 0.73744 0.85635 0.86302 1.90592 1.49817 1.18222 1.85066 1.23296 0.99413 1.02319 0.88942 1.22778 0.92008 1.02937 0.80186 1.60144 1.38926 1.64663 1.24033 1.03752 0.74518 0.76139 0.71252 1.30415 1.17745 1.19489 1.13228 1.93563 1.77806 1.41532 1.84968 1.93557 1.64165 1.87956 1.52201 1.22772 0.84364 0.95738 0.94827 0.93691 0.90243 0.95564 0.92085 0.83068 0.88349 0.86950 0.83868 0.83501 0.83841 0.87324 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.18 9.33 71.98 0.67 -6.51 16 2 C 0.22 11.38 2.56 29.85 0.08 11.46 16 3 H 0.01 0.69 7.16 -2.39 -0.02 0.67 16 4 C -0.55 -29.93 8.90 25.60 0.23 -29.70 16 5 H 0.07 3.68 7.81 -2.91 -0.02 3.66 16 6 C 0.02 0.94 5.30 84.66 0.45 1.39 16 7 N -0.92 -51.41 11.32 21.45 0.24 -51.17 16 8 Si 0.98 41.67 29.54 68.60 2.03 43.70 16 9 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 10 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 11 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 12 O -0.36 -16.04 9.86 -51.43 -0.51 -16.55 16 13 C 0.46 17.02 7.46 71.23 0.53 17.56 16 14 O -0.55 -23.32 15.13 21.95 0.33 -22.99 16 15 C -0.12 -2.92 4.44 -10.88 -0.05 -2.97 16 16 C 0.15 3.00 8.48 86.44 0.73 3.73 16 17 N -1.04 -19.55 4.00 -529.24 -2.12 -21.67 16 18 S 2.64 46.50 6.57 -56.49 -0.37 46.13 16 19 C -0.66 -5.75 10.99 113.37 1.25 -4.51 16 20 O -0.99 -24.33 18.02 -127.65 -2.30 -26.63 16 21 O -0.99 -24.06 18.02 -127.65 -2.30 -26.36 16 22 C 0.15 3.03 8.25 86.49 0.71 3.74 16 23 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.08 4.28 6.07 -2.39 -0.01 4.27 16 25 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 27 H 0.15 3.17 8.14 -2.38 -0.02 3.15 16 28 H 0.10 1.90 8.09 -2.39 -0.02 1.88 16 29 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.10 2.09 7.44 -2.39 -0.02 2.07 16 Total: -1.00 -74.35 309.51 0.71 -73.64 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 1.10 Total: 7.71 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 4.60 Total: -5.81 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -1.87 Total: -72.84 kcal Atomic # 8 Polarization: -87.76 SS G_CDS: -4.78 Total: -92.53 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 46.50 SS G_CDS: -0.37 Total: 46.13 kcal Total: -74.35 0.71 -73.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122428089.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.717 kcal (2) G-P(sol) polarization free energy of solvation -74.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds