Wall clock time and date at job start Mon Mar 30 2020 01:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34977 * 125.97496 * 2 1 4 4 C 1.35222 * 107.87315 * 179.72542 * 3 2 1 5 5 C 1.40444 * 107.86511 * 0.43155 * 4 3 2 6 6 N 1.40005 * 125.97914 * 179.82597 * 5 4 3 7 7 C 1.34777 * 120.00129 * 359.71739 * 6 5 4 8 8 O 1.21785 * 119.99665 * 0.02562 * 7 6 5 9 9 C 1.46183 * 120.00044 * 180.02562 * 7 6 5 10 10 S 1.75662 * 125.22901 * 359.95731 * 9 7 6 11 11 C 1.75473 * 92.09185 * 180.02562 * 10 9 7 12 12 C 1.32758 * 111.37001 * 359.71135 * 11 10 9 13 13 C 1.39580 * 125.22826 * 180.02562 * 9 7 6 14 14 C 1.40510 * 123.71879 * 359.95997 * 13 9 7 15 15 H 1.08001 * 120.00492 * 335.71121 * 14 13 9 16 16 C 1.40316 * 119.99826 * 155.70965 * 14 13 9 17 17 N 1.30646 * 119.99985 * 339.52452 * 16 14 13 18 18 Si 1.86797 * 120.00123 * 159.53107 * 16 14 13 19 19 H 1.48495 * 109.47150 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.46678 * 299.99437 * 18 16 14 21 21 H 1.48493 * 109.47479 * 59.99561 * 18 16 14 22 22 N 1.31260 * 108.04538 * 359.56453 * 5 4 3 23 23 H 1.08997 * 109.47245 * 269.97551 * 1 2 3 24 24 H 1.09001 * 109.46862 * 29.97053 * 1 2 3 25 25 H 1.08996 * 109.47088 * 149.97269 * 1 2 3 26 26 H 1.08003 * 126.06342 * 0.02562 * 3 2 1 27 27 H 1.07999 * 126.06948 * 180.28599 * 4 3 2 28 28 H 0.96999 * 120.00096 * 179.72114 * 6 5 4 29 29 H 1.08007 * 124.31674 * 180.02562 * 11 10 9 30 30 H 1.07997 * 122.78137 * 180.29678 * 12 11 10 31 31 H 0.97003 * 119.99745 * 354.00628 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2580 1.0923 0.0000 4 6 3.5432 0.6722 0.0062 5 6 3.5375 -0.7322 0.0000 6 7 4.6671 -1.5594 0.0000 7 6 5.9004 -1.0158 0.0006 8 8 6.0322 0.1949 0.0015 9 6 7.0798 -1.8795 0.0000 10 16 7.0495 -3.6359 -0.0003 11 6 8.8017 -3.7301 -0.0002 12 6 9.3512 -2.5216 -0.0062 13 6 8.4030 -1.4353 0.0010 14 6 8.7705 -0.0791 0.0018 15 1 8.0892 0.6653 -0.3829 16 6 10.0228 0.3080 0.5026 17 7 10.6744 -0.4817 1.3141 18 14 10.7581 1.9528 0.0092 19 1 12.0773 2.1232 0.6695 20 1 10.9328 1.9946 -1.4648 21 1 9.8487 3.0482 0.4312 22 7 2.2878 -1.1337 0.0000 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8903 -0.5134 25 1 -0.3633 -0.8897 -0.5142 26 1 1.9249 2.1197 0.0004 27 1 4.4188 1.3044 0.0121 28 1 4.5621 -2.5237 -0.0004 29 1 9.3619 -4.6536 -0.0007 30 1 10.4197 -2.3651 -0.0118 31 1 10.2567 -1.2946 1.6392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124615074.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:43 Heat of formation + Delta-G solvation = 48.141491 kcal Electronic energy + Delta-G solvation = -18337.902650 eV Core-core repulsion = 15325.751313 eV Total energy + Delta-G solvation = -3012.151337 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.23177 -40.21293 -38.33193 -35.78001 -34.92443 -33.22242 -31.03110 -30.89937 -28.22724 -26.75582 -24.58925 -23.07405 -22.17092 -21.12177 -20.90381 -19.42216 -18.28061 -18.02906 -16.82975 -16.58508 -16.42028 -15.89858 -15.61135 -15.54134 -14.95526 -14.58855 -14.17934 -13.87927 -13.84283 -13.64662 -13.29577 -13.22303 -12.76521 -12.56078 -12.02601 -11.87943 -11.75872 -11.68547 -11.51201 -11.00178 -10.44951 -9.86268 -9.74521 -9.33896 -9.21073 -9.05833 -6.60321 0.10391 0.87525 1.16359 1.38727 1.38960 1.49256 1.62372 1.66425 1.82137 1.98761 2.25918 2.45408 2.55551 3.12048 3.77800 4.02038 4.17970 4.41043 4.49688 4.63101 4.72440 4.75392 4.85395 4.90838 5.12767 5.23268 5.29676 5.32648 5.79561 5.82553 5.92565 6.20078 6.29042 6.44704 6.64488 6.94365 7.48709 7.78673 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.019625 B = 0.005477 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.431501 B = 5111.109695 C = 6443.628335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.373 5.373 3 C 0.086 3.914 4 C -0.311 4.311 5 C 0.288 3.712 6 N -0.645 5.645 7 C 0.595 3.405 8 O -0.567 6.567 9 C -0.471 4.471 10 S 0.016 5.984 11 C -0.161 4.161 12 C -0.170 4.170 13 C 0.092 3.908 14 C -0.452 4.452 15 H 0.087 0.913 16 C 0.003 3.997 17 N -0.779 5.779 18 Si 1.120 2.880 19 H -0.258 1.258 20 H -0.257 1.257 21 H -0.266 1.266 22 N -0.363 5.363 23 H 0.087 0.913 24 H 0.123 0.877 25 H 0.088 0.912 26 H 0.226 0.774 27 H 0.146 0.854 28 H 0.409 0.591 29 H 0.187 0.813 30 H 0.133 0.867 31 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.049 1.041 -1.954 11.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.157 5.157 3 C -0.061 4.061 4 C -0.342 4.342 5 C 0.034 3.966 6 N -0.293 5.293 7 C 0.393 3.607 8 O -0.450 6.450 9 C -0.590 4.590 10 S 0.273 5.727 11 C -0.296 4.296 12 C -0.203 4.203 13 C 0.082 3.918 14 C -0.482 4.482 15 H 0.105 0.895 16 C -0.217 4.217 17 N -0.402 5.402 18 Si 0.935 3.065 19 H -0.182 1.182 20 H -0.182 1.182 21 H -0.191 1.191 22 N -0.196 5.196 23 H 0.105 0.895 24 H 0.142 0.858 25 H 0.107 0.893 26 H 0.242 0.758 27 H 0.164 0.836 28 H 0.244 0.756 29 H 0.204 0.796 30 H 0.151 0.849 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.630 0.674 -1.744 11.779 hybrid contribution 0.308 -0.174 -0.004 0.354 sum -11.322 0.500 -1.747 11.467 Atomic orbital electron populations 1.22247 0.70942 1.06207 1.04729 1.48479 1.07616 1.02217 1.57424 1.23105 0.89110 0.95166 0.98723 1.21933 0.99174 0.93190 1.19904 1.19519 0.86994 0.91481 0.98618 1.42589 1.02621 1.09184 1.74885 1.16996 0.81028 0.87092 0.75574 1.90563 1.85568 1.15372 1.53530 1.22623 0.94720 0.94449 1.47211 1.82570 1.04284 1.02726 1.83164 1.25490 0.97220 1.01395 1.05471 1.21457 0.99925 0.92258 1.06641 1.18326 0.89811 0.94173 0.89525 1.21080 1.02397 0.93864 1.30865 0.89503 1.28813 0.93303 1.07842 0.91787 1.70530 1.39538 1.11193 1.18907 0.82968 0.76550 0.68808 0.78172 1.18214 1.18167 1.19121 1.77220 0.99141 1.09490 1.33716 0.89481 0.85838 0.89321 0.75775 0.83616 0.75571 0.79623 0.84920 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.40 11.47 127.77 1.47 2.87 16 2 N -0.37 -10.35 4.01 -369.61 -1.48 -11.83 16 3 C 0.09 2.40 11.48 83.51 0.96 3.36 16 4 C -0.31 -12.45 9.60 22.11 0.21 -12.23 16 5 C 0.29 12.35 8.10 133.38 1.08 13.43 16 6 N -0.65 -29.23 5.44 -311.51 -1.69 -30.93 16 7 C 0.59 31.05 7.73 86.31 0.67 31.72 16 8 O -0.57 -32.25 11.58 -4.62 -0.05 -32.30 16 9 C -0.47 -24.26 6.50 24.66 0.16 -24.09 16 10 S 0.02 0.67 22.25 -56.49 -1.26 -0.58 16 11 C -0.16 -6.36 11.07 66.64 0.74 -5.63 16 12 C -0.17 -7.85 8.19 22.61 0.19 -7.66 16 13 C 0.09 4.93 5.40 -20.89 -0.11 4.82 16 14 C -0.45 -24.81 8.44 23.33 0.20 -24.61 16 15 H 0.09 5.10 6.13 -2.91 -0.02 5.08 16 16 C 0.00 0.15 5.24 85.37 0.45 0.60 16 17 N -0.78 -38.95 12.49 21.89 0.27 -38.68 16 18 Si 1.12 42.11 29.98 68.60 2.06 44.17 16 19 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 20 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 21 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 22 N -0.36 -13.65 12.59 -54.50 -0.69 -14.33 16 23 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.23 3.62 8.06 -2.91 -0.02 3.59 16 27 H 0.15 6.64 5.90 -2.91 -0.02 6.63 16 28 H 0.41 16.89 7.90 -92.71 -0.73 16.16 16 29 H 0.19 5.63 8.06 -2.91 -0.02 5.61 16 30 H 0.13 6.03 6.79 -2.91 -0.02 6.01 16 31 H 0.29 14.95 6.23 -92.71 -0.58 14.37 16 Total: -1.00 -71.15 286.38 3.81 -67.35 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: 0.65 Total: 34.58 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 6.00 Total: -17.44 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -3.59 Total: -95.77 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.05 Total: -32.30 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.06 Total: 44.17 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -1.26 Total: -0.58 kcal Total: -71.15 3.81 -67.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124615074.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.489 kcal (2) G-P(sol) polarization free energy of solvation -71.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds