Wall clock time and date at job start Mon Mar 30 2020 01:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00356 * 2 1 4 4 H 1.48499 * 109.47411 * 270.00237 * 3 2 1 5 5 H 1.48499 * 109.46852 * 30.00204 * 3 2 1 6 6 H 1.48499 * 109.47276 * 149.99894 * 3 2 1 7 7 C 1.37878 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99968 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00060 * 179.97438 * 7 2 1 10 10 C 1.50696 * 109.47049 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00480 * 359.97438 * 10 9 7 12 12 N 1.34786 * 119.99869 * 180.02562 * 10 9 7 13 13 C 1.39475 * 119.99947 * 180.02562 * 12 10 9 14 14 C 1.36106 * 126.21402 * 359.40627 * 13 12 10 15 15 C 1.39762 * 107.82715 * 179.90618 * 14 13 12 16 16 N 1.30851 * 108.32050 * 0.36647 * 15 14 13 17 17 N 1.35254 * 126.21627 * 179.72384 * 13 12 10 18 18 C 1.46501 * 126.04479 * 359.92219 * 17 13 12 19 19 C 1.53005 * 109.46860 * 90.00346 * 18 17 13 20 20 F 1.39899 * 109.47072 * 59.99864 * 19 18 17 21 21 F 1.39907 * 109.47052 * 179.97438 * 19 18 17 22 22 F 1.39896 * 109.47244 * 300.00039 * 19 18 17 23 23 H 0.97005 * 119.99873 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47228 * 59.99911 * 9 7 2 25 25 H 1.08993 * 109.47092 * 299.99758 * 9 7 2 26 26 H 0.96996 * 119.99695 * 359.72075 * 12 10 9 27 27 H 1.07996 * 126.09059 * 0.02562 * 14 13 12 28 28 H 1.07998 * 125.83780 * 180.12879 * 15 14 13 29 29 H 1.09005 * 109.47343 * 210.00038 * 18 17 13 30 30 H 1.08996 * 109.47725 * 330.00546 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4643 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0136 -2.6150 -0.0010 11 8 3.2255 -3.5369 0.0000 12 7 5.3388 -2.8614 -0.0009 13 6 5.8036 -4.1764 -0.0014 14 6 5.0363 -5.3005 0.0095 15 6 5.8940 -6.4040 0.0025 16 7 7.1271 -5.9665 -0.0041 17 7 7.0988 -4.5661 -0.0066 18 6 8.2656 -3.6803 -0.0145 19 6 8.6787 -3.3683 1.4253 20 9 9.0012 -4.5585 2.0862 21 9 9.7934 -2.5228 1.4179 22 9 7.6198 -2.7389 2.0884 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.6806 0.8889 25 1 3.8744 -0.6803 -0.8911 26 1 5.9691 -2.1241 -0.0051 27 1 3.9569 -5.3339 0.0197 28 1 5.5907 -7.4405 0.0061 29 1 9.0907 -4.1707 -0.5311 30 1 8.0144 -2.7530 -0.5293 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143194287.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:53 Heat of formation + Delta-G solvation = -125.007326 kcal Electronic energy + Delta-G solvation = -21599.792867 eV Core-core repulsion = 17595.523623 eV Total energy + Delta-G solvation = -4004.269244 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.24255 -48.77713 -48.73021 -42.60944 -40.48995 -36.08377 -35.08017 -34.88779 -32.09474 -29.99465 -29.58021 -25.74930 -24.89953 -23.09315 -22.03969 -20.94520 -20.02242 -19.65234 -19.37912 -19.02882 -18.26904 -17.32870 -16.71926 -16.54394 -16.10221 -15.68068 -15.56576 -15.52029 -15.22374 -15.15560 -14.88794 -14.86211 -14.77134 -14.44181 -14.16933 -13.64654 -13.57281 -13.25175 -12.87271 -12.45335 -12.09028 -11.87886 -11.80658 -11.54483 -10.78741 -10.72954 -10.26891 -9.20511 -8.25049 -6.34803 0.44612 0.82334 1.42210 1.46106 1.51754 1.56659 1.67822 1.96771 2.02676 2.39574 2.59657 2.77185 3.08325 3.08795 3.46603 3.84314 3.95108 4.07639 4.41051 4.49382 4.65700 4.87465 5.00002 5.08303 5.44085 5.62565 5.76891 6.14471 6.35629 6.61810 6.81615 7.13090 7.29975 8.92037 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.022312 B = 0.005188 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.631849 B = 5395.388990 C = 6385.640769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.956 3.044 4 H -0.260 1.260 5 H -0.290 1.290 6 H -0.225 1.225 7 C -0.536 4.536 8 H 0.034 0.966 9 C -0.020 4.020 10 C 0.531 3.469 11 O -0.535 6.535 12 N -0.642 5.642 13 C 0.318 3.682 14 C -0.310 4.310 15 C 0.081 3.919 16 N -0.300 5.300 17 N -0.398 5.398 18 C 0.090 3.910 19 C 0.435 3.565 20 F -0.186 7.186 21 F -0.168 7.168 22 F -0.190 7.190 23 H 0.268 0.732 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.425 0.575 27 H 0.151 0.849 28 H 0.220 0.780 29 H 0.173 0.827 30 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.018 -3.944 -0.672 23.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.777 3.223 4 H -0.185 1.185 5 H -0.216 1.216 6 H -0.148 1.148 7 C -0.575 4.575 8 H 0.052 0.948 9 C -0.060 4.060 10 C 0.320 3.680 11 O -0.408 6.408 12 N -0.292 5.292 13 C 0.099 3.901 14 C -0.341 4.341 15 C -0.106 4.106 16 N -0.120 5.120 17 N -0.187 5.187 18 C -0.033 4.033 19 C 0.379 3.621 20 F -0.167 7.167 21 F -0.150 7.150 22 F -0.171 7.171 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.264 0.736 27 H 0.168 0.832 28 H 0.237 0.763 29 H 0.190 0.810 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 23.575 -4.667 -0.642 24.041 hybrid contribution -0.973 1.155 0.430 1.570 sum 22.603 -3.512 -0.212 22.875 Atomic orbital electron populations 1.70082 1.08845 1.28453 1.51728 1.26086 0.95722 1.03805 0.93638 0.85607 0.80005 0.76976 0.79679 1.18484 1.21623 1.14792 1.21120 0.90578 0.93965 1.51805 0.94771 1.19632 0.96040 0.88767 1.01541 1.21501 0.79775 0.93409 0.73293 1.90562 1.55875 1.47193 1.47133 1.43157 1.08563 1.04305 1.73195 1.18219 0.85311 0.86956 0.99596 1.21753 1.01670 0.90447 1.20245 1.24302 0.88975 1.01286 0.96058 1.77464 1.21559 0.85367 1.27637 1.48254 1.02175 1.05374 1.62921 1.23153 0.90768 0.98322 0.91072 1.21251 0.75169 0.74420 0.91252 1.93221 1.92735 1.47148 1.83605 1.93238 1.53327 1.71524 1.96890 1.93232 1.57338 1.82855 1.83720 0.92297 0.90375 0.90029 0.73650 0.83178 0.76349 0.80981 0.81626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 2 C 0.00 0.25 5.47 84.66 0.46 0.71 16 3 Si 0.96 39.42 27.47 68.60 1.88 41.30 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.23 -7.78 6.54 99.48 0.65 -7.13 16 7 C -0.54 -30.27 9.48 25.60 0.24 -30.03 16 8 H 0.03 2.28 7.00 -2.91 -0.02 2.26 16 9 C -0.02 -0.82 4.53 29.10 0.13 -0.69 16 10 C 0.53 21.08 7.79 87.65 0.68 21.77 16 11 O -0.53 -26.19 12.59 -3.05 -0.04 -26.22 16 12 N -0.64 -18.47 5.42 -308.56 -1.67 -20.14 16 13 C 0.32 9.42 7.46 131.32 0.98 10.40 16 14 C -0.31 -10.21 9.65 22.14 0.21 -10.00 16 15 C 0.08 2.11 12.01 85.21 1.02 3.13 16 16 N -0.30 -7.81 12.56 -57.09 -0.72 -8.53 16 17 N -0.40 -9.37 3.48 -344.98 -1.20 -10.57 16 18 C 0.09 1.22 6.22 86.38 0.54 1.76 16 19 C 0.43 7.70 3.29 71.98 0.24 7.93 16 20 F -0.19 -4.22 17.23 44.97 0.78 -3.44 16 21 F -0.17 -2.58 17.32 44.97 0.78 -1.80 16 22 F -0.19 -4.26 17.04 44.97 0.77 -3.49 16 23 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 24 H 0.08 2.87 7.20 -2.39 -0.02 2.85 16 25 H 0.08 2.86 7.57 -2.39 -0.02 2.84 16 26 H 0.42 8.38 7.97 -92.71 -0.74 7.64 16 27 H 0.15 5.90 5.83 -2.91 -0.02 5.88 16 28 H 0.22 3.96 8.06 -2.91 -0.02 3.94 16 29 H 0.17 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.17 1.05 7.50 -2.39 -0.02 1.03 16 Total: -1.00 -78.04 281.29 5.81 -72.23 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.42 Total: 14.35 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 4.51 Total: 4.98 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -3.29 Total: -97.91 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.04 Total: -26.22 kcal Atomic # 9 Polarization: -11.05 SS G_CDS: 2.32 Total: -8.73 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 1.88 Total: 41.30 kcal Total: -78.04 5.81 -72.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194287.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.776 kcal (2) G-P(sol) polarization free energy of solvation -78.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds