Wall clock time and date at job start Mon Mar 30 2020 01:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36879 * 120.00216 * 2 1 4 4 H 1.08005 * 119.99765 * 188.36510 * 3 2 1 5 5 C 1.39031 * 119.99907 * 8.37050 * 3 2 1 6 6 N 1.31375 * 120.00233 * 39.48060 * 5 3 2 7 7 Si 1.86804 * 119.99579 * 219.47498 * 5 3 2 8 8 H 1.48494 * 109.46872 * 60.00324 * 7 5 3 9 9 H 1.48503 * 109.46577 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47100 * 300.00048 * 7 5 3 11 11 C 1.34784 * 119.99514 * 180.02562 * 2 1 3 12 12 O 1.21626 * 119.99971 * 193.40735 * 11 2 1 13 13 C 1.47395 * 119.99930 * 13.41164 * 11 2 1 14 14 C 1.39414 * 120.08283 * 338.32215 * 13 11 2 15 15 C 1.38164 * 119.79260 * 179.70551 * 14 13 11 16 16 C 1.37534 * 120.82463 * 0.57632 * 15 14 13 17 17 C 1.41006 * 120.78950 * 359.72266 * 16 15 14 18 18 N 1.34874 * 128.69875 * 179.97438 * 17 16 15 19 19 C 1.28868 * 117.89050 * 179.97438 * 18 17 16 20 20 N 1.37985 * 124.81427 * 179.97438 * 19 18 17 21 21 S 1.75805 * 110.36452 * 0.02562 * 19 18 17 22 22 C 1.39758 * 118.46062 * 359.97438 * 17 16 15 23 23 H 1.08993 * 109.47305 * 247.69156 * 1 2 3 24 24 H 1.09002 * 109.46861 * 7.68939 * 1 2 3 25 25 H 1.09002 * 109.47140 * 127.68332 * 1 2 3 26 26 H 0.96999 * 120.00050 * 180.02562 * 6 5 3 27 27 H 1.07994 * 120.10485 * 359.97438 * 14 13 11 28 28 H 1.07997 * 119.59045 * 180.28285 * 15 14 13 29 29 H 1.07995 * 119.60454 * 179.70047 * 16 15 14 30 30 H 0.96997 * 120.00492 * 359.97438 * 20 19 18 31 31 H 0.97003 * 119.99650 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1854 0.0000 4 1 3.2209 1.1903 -0.1361 5 6 1.4654 2.3830 0.1753 6 7 0.4770 2.4549 1.0377 7 14 1.9521 3.8901 -0.8154 8 1 1.8019 3.5998 -2.2640 9 1 1.0754 5.0301 -0.4450 10 1 3.3659 4.2385 -0.5243 11 6 2.1388 -1.1673 -0.0005 12 8 3.3302 -1.1819 0.2437 13 6 1.4319 -2.4262 -0.2972 14 6 0.0496 -2.5066 -0.1341 15 6 -0.6077 -3.6878 -0.4198 16 6 0.0860 -4.7934 -0.8532 17 6 1.4851 -4.7471 -1.0224 18 7 2.3176 -5.7251 -1.4340 19 6 3.5745 -5.4525 -1.5150 20 7 4.5493 -6.3423 -1.9176 21 16 3.8711 -3.7864 -1.0386 22 6 2.1509 -3.5512 -0.7399 23 1 -0.3633 -0.3901 0.9507 24 1 -0.3633 1.0185 -0.1375 25 1 -0.3633 -0.6282 -0.8133 26 1 -0.0005 3.2904 1.1597 27 1 -0.5061 -1.6470 0.2102 28 1 -1.6791 -3.7450 -0.2967 29 1 -0.4472 -5.7081 -1.0662 30 1 4.3067 -7.2483 -2.1648 31 1 5.4771 -6.0617 -1.9534 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152178281.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:24 Heat of formation + Delta-G solvation = 49.144376 kcal Electronic energy + Delta-G solvation = -18727.425212 eV Core-core repulsion = 15715.317364 eV Total energy + Delta-G solvation = -3012.107849 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.42987 -40.18315 -37.85618 -36.89382 -35.03652 -33.90541 -31.99019 -30.25847 -28.24639 -27.09566 -25.12824 -24.08595 -22.24962 -21.58547 -19.44461 -19.18267 -18.38970 -17.59252 -17.24421 -16.71512 -16.40356 -16.14928 -15.98413 -15.63827 -15.61218 -14.94695 -14.55334 -13.89950 -13.78446 -13.56004 -13.31971 -13.21702 -12.93576 -12.41234 -12.13050 -12.08214 -11.62112 -11.07454 -10.98432 -10.85383 -10.59830 -10.36985 -9.88168 -9.08435 -8.79534 -8.62506 -5.86033 -0.34539 -0.03158 0.09840 0.82874 1.29243 1.41156 1.45151 1.53394 2.11802 2.22631 2.34433 2.73811 2.92131 3.06416 3.62850 3.84039 4.10124 4.17465 4.40386 4.49834 4.58661 4.74887 4.89966 5.13128 5.17675 5.28675 5.40387 5.45237 5.79197 5.94023 5.97850 6.32076 6.37149 6.98460 7.06199 7.32073 7.95106 8.42046 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.027373 B = 0.005468 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.654452 B = 5119.157170 C = 5919.522202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.429 5.429 3 C -0.370 4.370 4 H 0.074 0.926 5 C 0.024 3.976 6 N -0.846 5.846 7 Si 0.974 3.026 8 H -0.267 1.267 9 H -0.263 1.263 10 H -0.276 1.276 11 C 0.440 3.560 12 O -0.631 6.631 13 C -0.072 4.072 14 C -0.146 4.146 15 C -0.085 4.085 16 C -0.083 4.083 17 C 0.107 3.893 18 N -0.569 5.569 19 C 0.360 3.640 20 N -0.788 5.788 21 S 0.063 5.937 22 C -0.188 4.188 23 H 0.066 0.934 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.285 0.715 27 H 0.185 0.815 28 H 0.182 0.818 29 H 0.160 0.840 30 H 0.423 0.577 31 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 -12.723 -5.953 14.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.144 5.144 3 C -0.496 4.496 4 H 0.092 0.908 5 C -0.184 4.184 6 N -0.480 5.480 7 Si 0.797 3.203 8 H -0.192 1.192 9 H -0.187 1.187 10 H -0.201 1.201 11 C 0.233 3.767 12 O -0.522 6.522 13 C -0.080 4.080 14 C -0.168 4.168 15 C -0.105 4.105 16 C -0.105 4.105 17 C -0.013 4.013 18 N -0.297 5.297 19 C -0.020 4.020 20 N -0.342 5.342 21 S 0.311 5.689 22 C -0.308 4.308 23 H 0.084 0.916 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.201 0.799 28 H 0.200 0.800 29 H 0.178 0.822 30 H 0.257 0.743 31 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -1.855 -12.472 -5.810 13.883 hybrid contribution 0.116 0.629 -0.037 0.641 sum -1.739 -11.843 -5.847 13.321 Atomic orbital electron populations 1.22607 0.79734 1.04828 1.00292 1.43753 1.06820 1.04475 1.59314 1.19525 0.94143 0.83314 1.52646 0.90772 1.25925 0.96330 1.01162 0.95013 1.70232 1.22976 1.29833 1.24945 0.85316 0.78723 0.76817 0.79494 1.19248 1.18711 1.20087 1.18404 0.87573 0.84077 0.86691 1.90530 1.17657 1.86543 1.57434 1.19325 0.94893 0.91556 1.02229 1.23170 0.91958 1.01949 0.99685 1.21348 1.02053 0.90363 0.96721 1.21070 0.88829 1.00756 0.99864 1.19162 0.95932 0.85929 1.00283 1.66348 1.01229 1.32958 1.29116 1.24237 0.90388 0.93418 0.93921 1.41393 1.06743 1.13320 1.72771 1.85625 1.05727 1.06823 1.70715 1.23463 0.96111 0.99265 1.12007 0.91631 0.89440 0.89679 0.90435 0.79904 0.80041 0.82235 0.74271 0.73768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.83 7.73 127.77 0.99 3.82 16 2 N -0.43 -22.75 3.02 -691.03 -2.09 -24.83 16 3 C -0.37 -21.17 9.26 84.10 0.78 -20.40 16 4 H 0.07 4.66 7.52 -2.91 -0.02 4.63 16 5 C 0.02 1.21 4.51 84.95 0.38 1.59 16 6 N -0.85 -42.48 11.39 21.68 0.25 -42.23 16 7 Si 0.97 40.14 29.69 68.60 2.04 42.18 16 8 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 9 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 10 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 11 C 0.44 23.75 7.43 86.65 0.64 24.40 16 12 O -0.63 -38.52 15.11 -4.11 -0.06 -38.58 16 13 C -0.07 -3.17 5.81 -19.99 -0.12 -3.29 16 14 C -0.15 -4.97 7.92 22.54 0.18 -4.79 16 15 C -0.08 -2.17 9.97 22.09 0.22 -1.95 16 16 C -0.08 -2.34 10.09 22.78 0.23 -2.11 16 17 C 0.11 3.83 6.94 39.72 0.28 4.10 16 18 N -0.57 -19.03 10.61 -189.31 -2.01 -21.04 16 19 C 0.36 10.86 8.73 179.76 1.57 12.43 16 20 N -0.79 -14.54 9.05 -57.55 -0.52 -15.06 16 21 S 0.06 2.44 21.89 -56.49 -1.24 1.20 16 22 C -0.19 -7.88 6.31 23.23 0.15 -7.74 16 23 H 0.07 2.58 6.86 -2.39 -0.02 2.57 16 24 H 0.09 3.87 5.33 -2.39 -0.01 3.86 16 25 H 0.09 3.00 5.71 -2.39 -0.01 2.98 16 26 H 0.29 13.02 8.31 -92.71 -0.77 12.25 16 27 H 0.18 5.75 3.05 -13.85 -0.04 5.71 16 28 H 0.18 2.83 8.06 -2.91 -0.02 2.80 16 29 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.42 5.79 8.95 -92.71 -0.83 4.96 16 31 H 0.43 5.66 8.95 -92.71 -0.83 4.83 16 Total: -1.00 -75.81 277.57 1.20 -74.61 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -0.46 Total: 17.69 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 5.30 Total: 6.07 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -4.37 Total: -103.17 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -0.06 Total: -38.58 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.04 Total: 42.18 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.24 Total: 1.20 kcal Total: -75.81 1.20 -74.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152178281.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.752 kcal (2) G-P(sol) polarization free energy of solvation -75.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds