Wall clock time and date at job start Mon Mar 30 2020 01:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86803 * 120.00352 * 2 1 4 4 H 1.48498 * 109.46778 * 269.99615 * 3 2 1 5 5 H 1.48494 * 109.46865 * 29.99676 * 3 2 1 6 6 H 1.48494 * 109.47130 * 149.99647 * 3 2 1 7 7 C 1.39924 * 119.99513 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99784 * 197.44861 * 7 2 1 9 9 C 1.41222 * 120.00073 * 17.45391 * 7 2 1 10 10 C 1.40820 * 120.58097 * 203.50201 * 9 7 2 11 11 N 1.31444 * 120.37562 * 180.02562 * 10 9 7 12 12 C 1.32638 * 121.76411 * 359.97438 * 11 10 9 13 13 N 1.39302 * 119.41558 * 179.97438 * 12 11 10 14 14 C 1.36701 * 125.68574 * 144.71756 * 13 12 11 15 15 C 1.34786 * 108.19178 * 179.82743 * 14 13 12 16 16 C 1.41032 * 107.49410 * 0.42967 * 15 14 13 17 17 C 1.50710 * 126.25465 * 179.76768 * 16 15 14 18 18 N 1.46896 * 109.46798 * 269.95999 * 17 16 15 19 19 C 1.34782 * 107.49599 * 359.73022 * 16 15 14 20 20 C 1.39550 * 121.16562 * 0.02562 * 12 11 10 21 21 Cl 1.73595 * 120.25924 * 179.97438 * 20 12 11 22 22 C 1.36808 * 119.48399 * 0.27465 * 20 12 11 23 23 H 0.97002 * 119.99970 * 0.02562 * 1 2 3 24 24 H 1.08000 * 119.81355 * 0.02562 * 10 9 7 25 25 H 1.08005 * 125.90328 * 0.02562 * 14 13 12 26 26 H 1.08010 * 126.25190 * 180.17815 * 15 14 13 27 27 H 1.09006 * 109.46621 * 29.95433 * 17 16 15 28 28 H 1.08992 * 109.47081 * 149.95833 * 17 16 15 29 29 H 1.00903 * 111.00586 * 56.04265 * 18 17 16 30 30 H 1.00899 * 110.99698 * 180.02562 * 18 17 16 31 31 H 1.08005 * 125.90884 * 180.02562 * 19 16 15 32 32 H 1.07997 * 120.81676 * 179.70489 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4902 2.0463 -1.4001 5 1 1.4401 2.6526 0.6999 6 1 3.5401 1.4401 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0508 -1.2333 0.2810 9 6 1.3506 -2.4068 -0.3658 10 6 1.8321 -3.6540 0.0766 11 7 1.2173 -4.7638 -0.2671 12 6 0.1344 -4.7536 -1.0329 13 7 -0.4780 -5.9592 -1.3678 14 6 -1.8227 -6.1567 -1.5147 15 6 -2.0248 -7.4481 -1.8439 16 6 -0.7627 -8.0755 -1.8936 17 6 -0.4993 -9.5235 -2.2179 18 7 -0.5192 -10.3139 -0.9799 19 6 0.1651 -7.1433 -1.5987 20 6 -0.4018 -3.5567 -1.5097 21 17 -1.8198 -3.5709 -2.5110 22 6 0.2025 -2.3725 -1.1871 23 1 -0.4850 0.8401 -0.0004 24 1 2.7115 -3.6989 0.7020 25 1 -2.5902 -5.4069 -1.3916 26 1 -2.9793 -7.9176 -2.0311 27 1 -1.2705 -9.8901 -2.8955 28 1 0.4769 -9.6175 -2.6935 29 1 -1.3911 -10.1921 -0.4869 30 1 -0.3445 -11.2892 -1.1708 31 1 1.2322 -7.3038 -1.5531 32 1 -0.1914 -1.4340 -1.5483 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158766498.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:17 Heat of formation + Delta-G solvation = 56.715117 kcal Electronic energy + Delta-G solvation = -18306.193499 eV Core-core repulsion = 15292.370236 eV Total energy + Delta-G solvation = -3013.823263 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.068 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.33376 -40.24804 -37.53549 -36.42583 -35.62864 -33.21978 -32.64523 -30.74251 -29.79026 -27.41998 -25.56660 -23.87413 -23.53285 -21.40146 -20.22953 -19.58849 -19.05070 -17.54411 -17.03755 -16.65117 -16.17542 -15.79001 -15.51562 -15.12303 -14.69320 -14.43283 -14.19785 -14.07964 -13.84863 -13.80212 -13.40416 -13.04984 -12.87975 -12.82401 -12.60575 -12.25355 -11.96731 -11.56821 -11.38333 -10.56903 -10.29188 -10.14960 -9.48016 -9.12861 -8.94494 -8.89191 -6.59616 0.19172 0.64223 1.14440 1.36311 1.41251 1.55159 1.66435 2.04902 2.08710 2.13509 2.51578 3.34780 3.93047 4.02801 4.04158 4.30764 4.37570 4.47455 4.51077 4.54810 4.79613 4.87715 4.91854 5.00557 5.16416 5.26881 5.48615 5.56938 5.62367 6.14257 6.17907 6.30396 6.40354 6.43242 6.51794 6.70246 6.77646 7.32337 8.02279 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.034480 B = 0.004576 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.874259 B = 6117.687669 C = 6770.184686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.035 3.965 3 Si 0.994 3.006 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.249 1.249 7 C -0.440 4.440 8 H 0.107 0.893 9 C 0.047 3.953 10 C -0.008 4.008 11 N -0.460 5.460 12 C 0.151 3.849 13 N -0.369 5.369 14 C -0.025 4.025 15 C -0.197 4.197 16 C -0.176 4.176 17 C 0.146 3.854 18 N -0.857 5.857 19 C 0.000 4.000 20 C -0.043 4.043 21 Cl -0.069 7.069 22 C -0.139 4.139 23 H 0.301 0.699 24 H 0.163 0.837 25 H 0.160 0.840 26 H 0.158 0.842 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.344 0.656 30 H 0.350 0.650 31 H 0.148 0.852 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.970 -5.465 -3.345 6.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.185 4.185 3 Si 0.814 3.186 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.172 1.172 7 C -0.467 4.467 8 H 0.125 0.875 9 C 0.041 3.959 10 C -0.174 4.174 11 N -0.169 5.169 12 C -0.073 4.073 13 N -0.040 5.040 14 C -0.154 4.154 15 C -0.222 4.222 16 C -0.183 4.183 17 C 0.016 3.984 18 N -0.388 5.388 19 C -0.131 4.131 20 C -0.074 4.074 21 Cl -0.041 7.041 22 C -0.165 4.165 23 H 0.112 0.888 24 H 0.180 0.820 25 H 0.177 0.823 26 H 0.175 0.825 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.156 0.844 30 H 0.164 0.836 31 H 0.166 0.834 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.259 -5.387 -2.849 6.223 hybrid contribution -1.086 1.179 -0.634 1.724 sum -2.344 -4.208 -3.483 5.944 Atomic orbital electron populations 1.69801 1.09453 1.32264 1.30449 1.27033 0.95542 1.05336 0.90634 0.84979 0.79235 0.74584 0.79839 1.18527 1.19203 1.17226 1.20084 0.99163 0.90907 1.36552 0.87521 1.18813 0.91810 0.94919 0.90324 1.22778 1.03151 0.86395 1.05026 1.66582 1.07036 1.33456 1.09810 1.17342 0.98408 0.83575 1.08013 1.40993 1.06304 1.06141 1.50610 1.22261 0.83899 0.99071 1.10162 1.20959 0.98276 0.92743 1.10237 1.19544 0.92428 0.95842 1.10491 1.19913 1.00655 0.87156 0.90718 1.58642 1.42307 1.13762 1.24122 1.21786 0.98430 0.84533 1.08328 1.21160 0.92419 0.94581 0.99251 1.98264 1.38943 1.98596 1.68269 1.21315 0.99017 0.95684 1.00460 0.88753 0.82027 0.82266 0.82473 0.93557 0.90941 0.84355 0.83601 0.83435 0.84551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.10 10.92 21.82 0.24 -35.87 16 2 C 0.03 1.47 5.17 85.25 0.44 1.91 16 3 Si 0.99 31.97 29.59 68.60 2.03 34.00 16 4 H -0.26 -8.28 7.11 99.48 0.71 -7.57 16 5 H -0.27 -8.31 7.11 99.48 0.71 -7.61 16 6 H -0.25 -7.67 7.11 99.48 0.71 -6.96 16 7 C -0.44 -20.03 9.07 23.41 0.21 -19.82 16 8 H 0.11 4.45 7.90 -2.91 -0.02 4.43 16 9 C 0.05 2.28 5.59 -21.18 -0.12 2.17 16 10 C -0.01 -0.40 10.98 85.38 0.94 0.54 16 11 N -0.46 -22.41 10.08 -190.64 -1.92 -24.33 16 12 C 0.15 7.24 7.12 132.99 0.95 8.18 16 13 N -0.37 -16.00 2.88 -351.72 -1.01 -17.01 16 14 C -0.02 -0.96 9.43 83.14 0.78 -0.18 16 15 C -0.20 -6.53 10.81 22.16 0.24 -6.29 16 16 C -0.18 -5.89 5.65 -19.97 -0.11 -6.01 16 17 C 0.15 3.71 7.28 85.56 0.62 4.34 16 18 N -0.86 -19.91 9.61 -190.00 -1.83 -21.73 16 19 C 0.00 -0.01 11.08 83.14 0.92 0.91 16 20 C -0.04 -2.03 6.26 22.25 0.14 -1.89 16 21 Cl -0.07 -2.76 25.10 -2.72 -0.07 -2.83 16 22 C -0.14 -6.80 8.53 22.67 0.19 -6.61 16 23 H 0.30 12.18 8.30 -92.71 -0.77 11.41 16 24 H 0.16 6.71 8.06 -2.91 -0.02 6.69 16 25 H 0.16 5.95 6.19 -2.91 -0.02 5.93 16 26 H 0.16 4.14 8.06 -2.91 -0.02 4.12 16 27 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.34 7.66 8.99 -89.69 -0.81 6.86 16 30 H 0.35 6.03 9.08 -89.69 -0.81 5.21 16 31 H 0.15 5.87 8.06 -2.91 -0.02 5.85 16 32 H 0.14 6.78 6.19 -2.91 -0.02 6.76 16 Total: -1.00 -54.87 293.59 2.21 -52.66 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: -0.44 Total: 37.87 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 5.21 Total: -22.76 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -4.52 Total: -98.94 kcal Atomic # 14 Polarization: 31.97 SS G_CDS: 2.03 Total: 34.00 kcal Atomic # 17 Polarization: -2.76 SS G_CDS: -0.07 Total: -2.83 kcal Total: -54.87 2.21 -52.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158766498.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.372 kcal (2) G-P(sol) polarization free energy of solvation -54.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds