Wall clock time and date at job start Mon Mar 30 2020 01:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30846 * 1 3 3 Si 1.86799 * 120.00045 * 2 1 4 4 H 1.48500 * 109.47056 * 239.99891 * 3 2 1 5 5 H 1.48499 * 109.46872 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47177 * 119.99651 * 3 2 1 7 7 C 1.39967 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99603 * 196.08316 * 7 2 1 9 9 C 1.41055 * 120.00021 * 16.07809 * 7 2 1 10 10 C 1.40760 * 120.28096 * 26.11500 * 9 7 2 11 11 C 1.36440 * 119.95165 * 179.72271 * 10 9 7 12 12 C 1.38993 * 120.54091 * 0.27837 * 11 10 9 13 13 Cl 1.73600 * 119.71275 * 180.02562 * 12 11 10 14 14 C 1.38437 * 120.57275 * 0.02562 * 12 11 10 15 15 C 1.38488 * 120.02996 * 359.97438 * 14 12 11 16 16 N 1.39501 * 120.26725 * 180.02562 * 15 14 12 17 17 N 1.40098 * 126.10304 * 230.10521 * 16 15 14 18 18 C 1.30863 * 108.25423 * 179.81527 * 17 16 15 19 19 C 1.39966 * 108.37228 * 0.44108 * 18 17 16 20 20 C 1.35301 * 107.96536 * 359.71737 * 19 18 17 21 21 C 1.50705 * 126.19000 * 180.02562 * 20 19 18 22 22 N 1.46894 * 109.47100 * 94.73538 * 21 20 19 23 23 H 0.96996 * 120.00159 * 0.02562 * 1 2 3 24 24 H 1.07995 * 120.02346 * 359.97438 * 10 9 7 25 25 H 1.07997 * 119.73199 * 180.30019 * 11 10 9 26 26 H 1.08000 * 119.98124 * 179.97438 * 14 12 11 27 27 H 1.08004 * 125.81401 * 180.13459 * 18 17 16 28 28 H 1.07997 * 126.02138 * 179.73728 * 19 18 17 29 29 H 1.09002 * 109.46900 * 214.74138 * 21 20 19 30 30 H 1.09001 * 109.46853 * 334.73037 * 21 20 19 31 31 H 1.00904 * 111.00019 * 179.97438 * 22 21 20 32 32 H 1.00900 * 111.00262 * 303.94870 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0962 1.6963 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0083 -1.2122 0.0005 8 1 3.0566 -1.2303 0.2597 9 6 1.3444 -2.4100 -0.3372 10 6 0.2119 -2.3825 -1.1727 11 6 -0.4217 -3.5458 -1.4998 12 6 0.0381 -4.7624 -1.0096 13 17 -0.7842 -6.2295 -1.4400 14 6 1.1460 -4.8144 -0.1812 15 6 1.8072 -3.6482 0.1659 16 7 2.9245 -3.6949 0.9999 17 7 3.1329 -2.9152 2.1451 18 6 4.2892 -3.2458 2.6611 19 6 4.8626 -4.2391 1.8588 20 6 4.0075 -4.5005 0.8433 21 6 4.2179 -5.5040 -0.2611 22 7 3.5726 -6.7730 0.1008 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1527 -1.4418 -1.5579 25 1 -1.2874 -3.5211 -2.1450 26 1 1.4948 -5.7650 0.1945 27 1 4.7287 -2.8207 3.5514 28 1 5.8189 -4.7136 2.0218 29 1 3.7811 -5.1246 -1.1849 30 1 5.2860 -5.6675 -0.4048 31 1 3.6992 -7.4629 -0.6246 32 1 3.9148 -7.1129 0.9871 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162597342.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:37 Heat of formation + Delta-G solvation = 89.549280 kcal Electronic energy + Delta-G solvation = -19050.084620 eV Core-core repulsion = 16037.685153 eV Total energy + Delta-G solvation = -3012.399467 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.068 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.61922 -37.70025 -35.42104 -34.64065 -33.77567 -32.20425 -29.81164 -29.30362 -28.11249 -25.34775 -24.52110 -22.03810 -21.46346 -19.93502 -18.92245 -17.53437 -16.83321 -15.58400 -15.45976 -14.78855 -14.52474 -14.15321 -13.88806 -13.55874 -13.20844 -12.78260 -12.76604 -12.54360 -12.17661 -11.80574 -11.49848 -11.33375 -11.24158 -10.84665 -10.43333 -10.26922 -9.98904 -9.85344 -9.80266 -9.30208 -8.81350 -8.59723 -8.13115 -7.57060 -7.35157 -6.97520 -4.56533 2.17164 2.55566 2.91639 2.96446 3.00025 3.06033 3.26641 3.47416 3.64354 3.78964 4.35679 4.83789 5.12787 5.23049 5.44025 5.59108 5.83403 6.11397 6.18872 6.23957 6.31695 6.65798 6.72771 6.79645 6.97697 7.10054 7.16289 7.27522 7.42289 7.48465 7.54119 7.69254 7.90973 8.09082 8.40068 8.49528 8.64443 8.68191 9.91167 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.013413 B = 0.008798 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.011355 B = 3181.894527 C = 4947.192134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.413 4.413 8 H 0.083 0.917 9 C 0.125 3.875 10 C -0.147 4.147 11 C -0.084 4.084 12 C -0.150 4.150 13 Cl -0.124 7.124 14 C -0.052 4.052 15 C -0.009 4.009 16 N -0.251 5.251 17 N -0.261 5.261 18 C 0.011 3.989 19 C -0.285 4.285 20 C 0.071 3.929 21 C 0.130 3.870 22 N -0.840 5.840 23 H 0.287 0.713 24 H 0.131 0.869 25 H 0.102 0.898 26 H 0.134 0.866 27 H 0.172 0.828 28 H 0.134 0.866 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.344 0.656 32 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.947 -5.835 -1.140 8.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.146 4.146 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.441 4.441 8 H 0.101 0.899 9 C 0.120 3.880 10 C -0.167 4.167 11 C -0.103 4.103 12 C -0.178 4.178 13 Cl -0.096 7.096 14 C -0.073 4.073 15 C -0.101 4.101 16 N -0.025 5.025 17 N -0.081 5.081 18 C -0.174 4.174 19 C -0.316 4.316 20 C -0.057 4.057 21 C -0.001 4.001 22 N -0.371 5.371 23 H 0.098 0.902 24 H 0.149 0.851 25 H 0.121 0.879 26 H 0.152 0.848 27 H 0.189 0.811 28 H 0.152 0.848 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.157 0.843 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.871 -4.593 -1.104 6.108 hybrid contribution 1.948 -0.221 0.041 1.961 sum 5.819 -4.815 -1.063 7.627 Atomic orbital electron populations 1.69791 1.07698 1.30157 1.32183 1.26013 0.94829 1.01786 0.91936 0.86237 0.80205 0.79416 0.80351 1.18614 1.19971 1.18540 1.19543 0.97730 0.90455 1.36345 0.89895 1.17519 0.91212 0.90905 0.88359 1.20910 0.98378 0.96846 1.00566 1.20406 0.99085 0.91285 0.99527 1.19837 1.00704 0.85177 1.12067 1.98226 1.79572 1.38661 1.93139 1.20657 0.92705 0.97553 0.96336 1.17007 0.94943 0.94587 1.03559 1.45293 1.12625 1.26583 1.18024 1.77714 1.17675 1.15815 0.96905 1.23724 0.94324 0.98491 1.00856 1.20974 1.03022 1.07598 0.99988 1.21048 0.89133 0.96874 0.98673 1.20156 0.96673 0.87870 0.95446 1.58593 1.64942 1.05690 1.07866 0.90161 0.85116 0.87949 0.84824 0.81133 0.84807 0.89588 0.93550 0.84293 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.03 10.96 55.55 0.61 -18.43 16 2 C 0.08 1.82 5.16 -17.32 -0.09 1.73 16 3 Si 0.91 18.35 29.59 -169.99 -5.03 13.32 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 7 C -0.41 -10.66 8.04 -37.87 -0.30 -10.97 16 8 H 0.08 2.19 7.11 -52.49 -0.37 1.82 16 9 C 0.12 3.20 5.57 -106.66 -0.59 2.61 16 10 C -0.15 -3.59 8.62 -39.28 -0.34 -3.93 16 11 C -0.08 -1.87 9.74 -39.95 -0.39 -2.26 16 12 C -0.15 -3.27 6.34 -39.23 -0.25 -3.52 16 13 Cl -0.12 -2.34 28.94 -51.86 -1.50 -3.84 16 14 C -0.05 -1.15 8.65 -39.42 -0.34 -1.49 16 15 C -0.01 -0.21 5.96 -83.06 -0.50 -0.71 16 16 N -0.25 -5.69 3.21 -6.46 -0.02 -5.72 16 17 N -0.26 -6.05 11.14 30.65 0.34 -5.71 16 18 C 0.01 0.20 12.02 -17.32 -0.21 -0.01 16 19 C -0.28 -4.90 10.72 -39.98 -0.43 -5.33 16 20 C 0.07 1.34 6.32 -81.84 -0.52 0.82 16 21 C 0.13 1.96 6.31 -4.98 -0.03 1.93 16 22 N -0.84 -11.04 7.88 -11.41 -0.09 -11.13 16 23 H 0.29 6.39 8.30 -40.82 -0.34 6.06 16 24 H 0.13 3.23 6.21 -52.49 -0.33 2.90 16 25 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 26 H 0.13 2.84 6.16 -52.49 -0.32 2.52 16 27 H 0.17 2.55 8.06 -52.48 -0.42 2.13 16 28 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.09 1.43 7.84 -51.93 -0.41 1.03 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.34 3.61 9.08 -39.29 -0.36 3.25 16 32 H 0.34 4.06 8.99 -39.29 -0.35 3.71 16 LS Contribution 292.48 15.07 4.41 4.41 Total: -1.00 -27.96 292.48 -8.23 -36.20 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -2.96 Total: 12.04 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -3.99 Total: -21.13 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.84 Total: -40.99 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -1.50 Total: -3.84 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.96 -8.23 -36.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162597342.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.745 kcal (2) G-P(sol) polarization free energy of solvation -27.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds