Wall clock time and date at job start Mon Mar 30 2020 01:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30846 * 1 3 3 Si 1.86799 * 120.00045 * 2 1 4 4 H 1.48500 * 109.47056 * 239.99891 * 3 2 1 5 5 H 1.48499 * 109.46872 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47177 * 119.99651 * 3 2 1 7 7 C 1.39967 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99603 * 196.08316 * 7 2 1 9 9 C 1.41055 * 120.00021 * 16.07809 * 7 2 1 10 10 C 1.40760 * 120.28096 * 26.11500 * 9 7 2 11 11 C 1.36440 * 119.95165 * 179.72271 * 10 9 7 12 12 C 1.38993 * 120.54091 * 0.27837 * 11 10 9 13 13 Cl 1.73600 * 119.71275 * 180.02562 * 12 11 10 14 14 C 1.38437 * 120.57275 * 0.02562 * 12 11 10 15 15 C 1.38488 * 120.02996 * 359.97438 * 14 12 11 16 16 N 1.39501 * 120.26725 * 180.02562 * 15 14 12 17 17 N 1.40098 * 126.10304 * 230.10521 * 16 15 14 18 18 C 1.30863 * 108.25423 * 179.81527 * 17 16 15 19 19 C 1.39966 * 108.37228 * 0.44108 * 18 17 16 20 20 C 1.35301 * 107.96536 * 359.71737 * 19 18 17 21 21 C 1.50705 * 126.19000 * 180.02562 * 20 19 18 22 22 N 1.46894 * 109.47100 * 94.73538 * 21 20 19 23 23 H 0.96996 * 120.00159 * 0.02562 * 1 2 3 24 24 H 1.07995 * 120.02346 * 359.97438 * 10 9 7 25 25 H 1.07997 * 119.73199 * 180.30019 * 11 10 9 26 26 H 1.08000 * 119.98124 * 179.97438 * 14 12 11 27 27 H 1.08004 * 125.81401 * 180.13459 * 18 17 16 28 28 H 1.07997 * 126.02138 * 179.73728 * 19 18 17 29 29 H 1.09002 * 109.46900 * 214.74138 * 21 20 19 30 30 H 1.09001 * 109.46853 * 334.73037 * 21 20 19 31 31 H 1.00904 * 111.00019 * 179.97438 * 22 21 20 32 32 H 1.00900 * 111.00262 * 303.94870 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0962 1.6963 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0083 -1.2122 0.0005 8 1 3.0566 -1.2303 0.2597 9 6 1.3444 -2.4100 -0.3372 10 6 0.2119 -2.3825 -1.1727 11 6 -0.4217 -3.5458 -1.4998 12 6 0.0381 -4.7624 -1.0096 13 17 -0.7842 -6.2295 -1.4400 14 6 1.1460 -4.8144 -0.1812 15 6 1.8072 -3.6482 0.1659 16 7 2.9245 -3.6949 0.9999 17 7 3.1329 -2.9152 2.1451 18 6 4.2892 -3.2458 2.6611 19 6 4.8626 -4.2391 1.8588 20 6 4.0075 -4.5005 0.8433 21 6 4.2179 -5.5040 -0.2611 22 7 3.5726 -6.7730 0.1008 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1527 -1.4418 -1.5579 25 1 -1.2874 -3.5211 -2.1450 26 1 1.4948 -5.7650 0.1945 27 1 4.7287 -2.8207 3.5514 28 1 5.8189 -4.7136 2.0218 29 1 3.7811 -5.1246 -1.1849 30 1 5.2860 -5.6675 -0.4048 31 1 3.6992 -7.4629 -0.6246 32 1 3.9148 -7.1129 0.9871 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162597342.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:37 Heat of formation + Delta-G solvation = 72.849565 kcal Electronic energy + Delta-G solvation = -19050.808774 eV Core-core repulsion = 16037.685153 eV Total energy + Delta-G solvation = -3013.123621 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.068 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.13285 -39.45388 -37.08274 -35.89959 -35.48082 -33.83905 -31.56647 -30.75965 -29.78163 -27.14254 -25.79910 -23.68528 -23.21326 -21.48346 -20.47508 -19.33587 -18.34992 -17.28111 -16.79205 -16.32737 -16.17328 -15.49128 -15.35863 -15.01397 -14.76774 -14.38017 -14.16097 -14.09171 -13.86292 -13.53716 -13.27584 -12.88626 -12.62217 -12.45830 -12.11609 -11.93129 -11.77454 -11.48324 -11.35908 -11.06402 -10.45014 -9.78060 -9.54345 -9.34394 -9.05230 -8.73131 -6.42908 0.48821 0.79028 1.31552 1.31765 1.42100 1.44557 1.60009 2.05725 2.07461 2.13635 2.56204 3.45038 3.71118 3.89407 4.16508 4.25694 4.44192 4.46279 4.63126 4.86234 4.86813 4.96904 4.98452 5.19079 5.31178 5.36573 5.48914 5.70470 5.84911 5.97852 6.11821 6.19417 6.31031 6.60359 6.66881 6.70323 6.91334 7.09925 8.16411 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.013413 B = 0.008798 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.011355 B = 3181.894527 C = 4947.192134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.039 3.961 3 Si 0.978 3.022 4 H -0.257 1.257 5 H -0.259 1.259 6 H -0.268 1.268 7 C -0.441 4.441 8 H 0.065 0.935 9 C 0.095 3.905 10 C -0.165 4.165 11 C -0.084 4.084 12 C -0.149 4.149 13 Cl -0.093 7.093 14 C -0.054 4.054 15 C -0.012 4.012 16 N -0.278 5.278 17 N -0.323 5.323 18 C 0.015 3.985 19 C -0.275 4.275 20 C 0.062 3.938 21 C 0.136 3.864 22 N -0.847 5.847 23 H 0.295 0.705 24 H 0.121 0.879 25 H 0.123 0.877 26 H 0.145 0.855 27 H 0.205 0.795 28 H 0.175 0.825 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.360 0.640 32 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.191 -7.045 -1.071 10.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.179 4.179 3 Si 0.799 3.201 4 H -0.182 1.182 5 H -0.183 1.183 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.083 0.917 9 C 0.091 3.909 10 C -0.185 4.185 11 C -0.103 4.103 12 C -0.177 4.177 13 Cl -0.065 7.065 14 C -0.075 4.075 15 C -0.105 4.105 16 N -0.053 5.053 17 N -0.143 5.143 18 C -0.170 4.170 19 C -0.305 4.305 20 C -0.065 4.065 21 C 0.004 3.996 22 N -0.381 5.381 23 H 0.106 0.894 24 H 0.138 0.862 25 H 0.141 0.859 26 H 0.163 0.837 27 H 0.222 0.778 28 H 0.193 0.807 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.176 0.824 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.113 -5.839 -1.047 7.832 hybrid contribution 1.602 -0.065 0.062 1.604 sum 6.715 -5.904 -0.985 8.996 Atomic orbital electron populations 1.69815 1.08717 1.31295 1.33080 1.26724 0.95557 1.04370 0.91214 0.85303 0.79046 0.75887 0.79912 1.18156 1.18251 1.19236 1.19506 0.97127 0.91713 1.38592 0.91686 1.17877 0.92110 0.91859 0.89074 1.20879 0.98989 0.97279 1.01391 1.20605 0.99367 0.90925 0.99431 1.20005 1.00366 0.86322 1.10969 1.98230 1.78854 1.36565 1.92849 1.20798 0.92727 0.97514 0.96476 1.17242 0.95514 0.94580 1.03125 1.45318 1.13455 1.28107 1.18441 1.77628 1.20368 1.17866 0.98476 1.24421 0.93093 0.98048 1.01421 1.21447 1.03943 1.06577 0.98515 1.21835 0.88197 0.96601 0.99842 1.20144 0.98606 0.87721 0.93087 1.58460 1.65128 1.05497 1.09043 0.89414 0.86168 0.85874 0.83708 0.77844 0.80733 0.91753 0.90141 0.82446 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.79 10.96 21.83 0.24 -40.55 16 2 C 0.04 1.94 5.16 85.26 0.44 2.38 16 3 Si 0.98 38.43 29.59 68.60 2.03 40.46 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 6 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.44 -23.78 8.04 23.38 0.19 -23.60 16 8 H 0.06 3.62 7.11 -2.91 -0.02 3.60 16 9 C 0.10 5.07 5.57 -21.18 -0.12 4.95 16 10 C -0.17 -8.33 8.62 22.47 0.19 -8.14 16 11 C -0.08 -3.77 9.74 22.03 0.21 -3.55 16 12 C -0.15 -6.39 6.34 22.50 0.14 -6.24 16 13 Cl -0.09 -3.34 28.94 -2.72 -0.08 -3.42 16 14 C -0.05 -2.42 8.65 22.38 0.19 -2.22 16 15 C -0.01 -0.60 5.96 38.77 0.23 -0.37 16 16 N -0.28 -12.74 3.21 -174.36 -0.56 -13.29 16 17 N -0.32 -15.19 11.14 -56.94 -0.63 -15.83 16 18 C 0.01 0.54 12.02 85.26 1.02 1.57 16 19 C -0.27 -8.74 10.72 22.01 0.24 -8.50 16 20 C 0.06 2.27 6.32 41.25 0.26 2.53 16 21 C 0.14 3.82 6.31 85.56 0.54 4.36 16 22 N -0.85 -20.24 7.88 -190.01 -1.50 -21.74 16 23 H 0.29 13.43 8.30 -92.71 -0.77 12.66 16 24 H 0.12 6.20 6.21 -2.91 -0.02 6.18 16 25 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 26 H 0.15 6.01 6.16 -2.91 -0.02 5.99 16 27 H 0.20 5.64 8.06 -2.91 -0.02 5.61 16 28 H 0.18 4.01 8.06 -2.91 -0.02 3.98 16 29 H 0.06 2.10 7.84 -2.39 -0.02 2.08 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.36 6.59 9.08 -89.69 -0.81 5.77 16 32 H 0.35 7.34 8.99 -89.69 -0.81 6.53 16 Total: -1.00 -62.57 292.48 2.61 -59.96 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -0.43 Total: 31.24 kcal Atomic # 6 Polarization: -40.38 SS G_CDS: 3.55 Total: -36.83 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -2.45 Total: -91.41 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Atomic # 17 Polarization: -3.34 SS G_CDS: -0.08 Total: -3.42 kcal Total: -62.57 2.61 -59.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162597342.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.805 kcal (2) G-P(sol) polarization free energy of solvation -62.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds