Wall clock time and date at job start Mon Mar 30 2020 01:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86799 * 119.99568 * 2 1 4 4 H 1.48501 * 109.47114 * 240.00301 * 3 2 1 5 5 H 1.48502 * 109.47524 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47051 * 120.00334 * 3 2 1 7 7 C 1.40090 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00633 * 179.97438 * 7 2 1 9 9 C 1.40866 * 119.99989 * 359.97438 * 7 2 1 10 10 N 1.33954 * 120.26789 * 351.95441 * 9 7 2 11 11 C 1.31671 * 119.87666 * 180.27386 * 10 9 7 12 12 C 1.39034 * 120.44710 * 359.45065 * 11 10 9 13 13 N 1.32181 * 120.55176 * 0.27927 * 12 11 10 14 14 C 1.32541 * 120.10455 * 359.97438 * 13 12 11 15 15 N 1.38580 * 120.22306 * 180.02562 * 14 13 12 16 16 C 1.36961 * 120.09584 * 124.57306 * 15 14 13 17 17 C 1.35313 * 119.25729 * 179.79218 * 16 15 14 18 18 F 1.35096 * 120.26491 * 180.19917 * 17 16 15 19 19 C 1.41197 * 119.46638 * 0.48524 * 17 16 15 20 20 O 1.35227 * 119.91091 * 179.74027 * 19 17 16 21 21 N 1.31982 * 120.17681 * 359.76274 * 19 17 16 22 22 C 1.34128 * 120.76142 * 359.97438 * 21 19 17 23 23 N 1.31451 * 119.73840 * 180.02562 * 22 21 19 24 24 H 0.96995 * 120.00128 * 359.97438 * 1 2 3 25 25 H 1.08003 * 119.77629 * 179.73167 * 11 10 9 26 26 H 1.07998 * 119.73065 * 180.29934 * 12 11 10 27 27 H 1.07992 * 120.37246 * 0.02562 * 16 15 14 28 28 H 0.96699 * 114.00182 * 270.02046 * 20 19 17 29 29 H 0.97000 * 119.99717 * 5.16638 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.0949 1.6966 -1.2125 5 1 1.2762 2.7465 0.0006 6 1 3.0950 1.6965 1.2125 7 6 2.0079 -1.2132 -0.0005 8 1 3.0879 -1.2132 -0.0010 9 6 1.3037 -2.4331 -0.0005 10 7 -0.0259 -2.4453 0.1619 11 6 -0.6758 -3.5904 0.1660 12 6 0.0072 -4.7887 -0.0086 13 7 1.3184 -4.7966 -0.1757 14 6 1.9951 -3.6569 -0.1785 15 7 3.3697 -3.6623 -0.3540 16 6 3.9367 -2.9237 -1.3584 17 6 5.2810 -2.9379 -1.5118 18 9 5.8621 -2.2138 -2.4932 19 6 6.0711 -3.7205 -0.6417 20 8 7.4150 -3.7455 -0.7902 21 7 5.5015 -4.4280 0.3158 22 6 4.1702 -4.4156 0.4785 23 7 3.6240 -5.1275 1.4392 24 1 -0.4850 0.8400 0.0004 25 1 -1.7473 -3.5986 0.3015 26 1 -0.5380 -5.7210 -0.0080 27 1 3.3181 -2.3335 -2.0182 28 1 7.7322 -4.4392 -1.3844 29 1 4.1867 -5.5990 2.0732 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162999435.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:48 Heat of formation + Delta-G solvation = 50.481209 kcal Electronic energy + Delta-G solvation = -21149.318898 eV Core-core repulsion = 17603.348594 eV Total energy + Delta-G solvation = -3545.970304 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.47324 -40.94274 -39.10988 -37.70325 -34.60141 -34.35142 -33.27447 -31.99335 -30.09448 -28.75623 -26.46196 -24.58234 -23.64939 -22.20387 -21.83839 -18.76964 -18.60290 -18.15816 -17.92242 -16.63977 -16.45879 -15.95887 -15.27223 -15.14940 -14.58304 -14.43405 -14.12168 -13.77349 -13.30449 -13.15468 -12.81623 -12.42919 -12.02482 -11.80074 -11.54510 -11.27874 -10.81893 -10.54621 -10.11270 -9.91191 -9.83299 -9.78910 -9.35398 -9.12347 -8.20901 -7.84466 -7.17795 -6.81081 -5.07209 0.76903 1.80110 2.14927 2.68205 2.79653 2.86758 2.89080 2.97562 3.43776 3.62191 3.93441 4.28629 4.35850 4.77816 5.02130 5.31960 5.50012 5.63488 5.72696 5.87931 6.15470 6.23681 6.39997 6.54731 6.64875 6.86360 7.15490 7.30531 7.48842 7.62437 8.00178 8.08256 8.28516 8.81044 8.98397 9.45100 9.77651 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.008885 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.213187 B = 3150.516193 C = 4579.340082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.696 5.696 2 C 0.068 3.932 3 Si 0.911 3.089 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.408 4.408 8 H 0.089 0.911 9 C 0.227 3.773 10 N -0.441 5.441 11 C 0.095 3.905 12 C -0.093 4.093 13 N -0.387 5.387 14 C 0.123 3.877 15 N -0.388 5.388 16 C 0.213 3.787 17 C -0.124 4.124 18 F -0.125 7.125 19 C 0.428 3.572 20 O -0.475 6.475 21 N -0.558 5.558 22 C 0.539 3.461 23 N -0.717 5.717 24 H 0.285 0.715 25 H 0.140 0.860 26 H 0.136 0.864 27 H 0.189 0.811 28 H 0.410 0.590 29 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.463 -0.718 -4.748 7.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.315 5.315 2 C -0.161 4.161 3 Si 0.733 3.267 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.438 4.438 8 H 0.107 0.893 9 C 0.101 3.899 10 N -0.158 5.158 11 C -0.076 4.076 12 C -0.256 4.256 13 N -0.100 5.100 14 C -0.112 4.112 15 N -0.080 5.080 16 C 0.072 3.928 17 C -0.158 4.158 18 F -0.105 7.105 19 C 0.215 3.785 20 O -0.283 6.283 21 N -0.292 5.292 22 C 0.171 3.829 23 N -0.352 5.352 24 H 0.096 0.904 25 H 0.157 0.843 26 H 0.154 0.846 27 H 0.206 0.794 28 H 0.270 0.730 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.452 -0.906 -3.334 5.635 hybrid contribution 1.106 0.680 -0.734 1.492 sum 5.558 -0.225 -4.068 6.891 Atomic orbital electron populations 1.70006 1.07436 1.29455 1.24560 1.26119 0.95089 1.01580 0.93327 0.86272 0.80278 0.79346 0.80793 1.18020 1.19495 1.18375 1.19607 0.94602 0.89368 1.40214 0.89334 1.19043 0.89334 0.90984 0.90574 1.69653 1.06045 1.24694 1.15377 1.23644 1.00395 0.90090 0.93481 1.22533 0.89298 0.98298 1.15486 1.67031 1.08552 1.28888 1.05522 1.18469 0.81331 0.91745 1.19669 1.41026 1.06194 1.36671 1.24076 1.22331 0.92954 0.89675 0.87826 1.17166 0.90078 1.10137 0.98402 1.91476 1.83619 1.76269 1.59124 1.20000 0.84064 0.87235 0.87229 1.84583 1.15599 1.57634 1.70441 1.69599 1.09866 1.26705 1.23013 1.19744 0.80486 0.91344 0.91356 1.70139 1.38589 1.18065 1.08439 0.90368 0.84278 0.84639 0.79395 0.72987 0.83768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -16.27 11.52 55.55 0.64 -15.63 15 2 C 0.07 1.53 5.49 -17.32 -0.10 1.43 15 3 Si 0.91 16.65 29.56 -169.99 -5.02 11.63 15 4 H -0.26 -4.54 7.11 56.52 0.40 -4.14 15 5 H -0.27 -4.78 7.11 56.52 0.40 -4.38 15 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 15 7 C -0.41 -9.65 7.92 -37.89 -0.30 -9.95 15 8 H 0.09 1.99 5.98 -52.49 -0.31 1.68 15 9 C 0.23 5.65 6.49 -84.63 -0.55 5.10 15 10 N -0.44 -10.95 8.09 -10.80 -0.09 -11.04 15 11 C 0.10 2.07 11.21 -17.33 -0.19 1.87 15 12 C -0.09 -2.00 11.22 -17.11 -0.19 -2.19 15 13 N -0.39 -9.23 9.81 -11.56 -0.11 -9.35 15 14 C 0.12 2.94 5.99 -154.33 -0.93 2.02 15 15 N -0.39 -8.35 2.56 -63.20 -0.16 -8.51 15 16 C 0.21 3.86 8.02 -16.30 -0.13 3.73 15 17 C -0.12 -2.05 7.30 -39.50 -0.29 -2.33 15 18 F -0.13 -1.93 17.14 2.25 0.04 -1.89 15 19 C 0.43 7.08 7.81 -16.36 -0.13 6.95 15 20 O -0.48 -6.26 13.44 -17.38 -0.23 -6.49 15 21 N -0.56 -10.75 10.49 -13.74 -0.14 -10.89 15 22 C 0.54 11.71 8.35 -322.74 -2.70 9.01 15 23 N -0.72 -16.31 12.84 29.77 0.38 -15.93 15 24 H 0.28 5.99 8.29 -40.82 -0.34 5.65 15 25 H 0.14 2.49 8.06 -52.48 -0.42 2.07 15 26 H 0.14 2.48 8.06 -52.49 -0.42 2.05 15 27 H 0.19 3.11 7.59 -52.49 -0.40 2.71 15 28 H 0.41 3.01 9.06 45.56 0.41 3.43 15 29 H 0.35 7.11 8.90 -40.82 -0.36 6.75 15 LS Contribution 272.52 15.07 4.11 4.11 Total: -1.00 -30.25 272.52 -6.74 -36.99 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -0.64 Total: 11.36 kcal Atomic # 6 Polarization: 21.14 SS G_CDS: -5.50 Total: 15.64 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: 0.52 Total: -71.34 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.23 Total: -6.49 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 16.65 SS G_CDS: -5.02 Total: 11.63 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.25 -6.74 -36.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162999435.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.473 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds