Wall clock time and date at job start Mon Mar 30 2020 01:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.47199 * 113.25806 * 2 1 4 4 N 2.60795 * 113.25758 * 0.02562 * 2 1 3 5 5 C 1.53515 * 114.17209 * 227.04954 * 2 1 3 6 6 N 1.47473 * 87.93125 * 220.14067 * 5 2 1 7 7 C 1.38410 * 110.99756 * 138.70843 * 6 5 2 8 8 N 1.32746 * 119.43879 * 359.97438 * 7 6 5 9 9 C 1.31473 * 121.73937 * 180.02562 * 8 7 6 10 10 C 1.40782 * 120.39129 * 359.97438 * 9 8 7 11 11 C 1.41195 * 120.56664 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99641 * 23.65576 * 11 10 9 13 13 C 1.39865 * 120.00404 * 203.66120 * 11 10 9 14 14 N 1.30911 * 119.99878 * 17.64177 * 13 11 10 15 15 Si 1.86794 * 120.00516 * 197.64283 * 13 11 10 16 16 H 1.48507 * 109.47147 * 59.99593 * 15 13 11 17 17 H 1.48492 * 109.47374 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47033 * 300.00071 * 15 13 11 19 19 C 1.41285 * 118.86994 * 359.97438 * 10 9 8 20 20 C 1.36669 * 118.40036 * 0.02562 * 19 10 9 21 21 Cl 1.73599 * 120.26055 * 180.02562 * 20 19 10 22 22 C 1.47474 * 87.84188 * 27.01101 * 6 5 2 23 23 H 1.09000 * 109.47329 * 192.95031 * 1 2 3 24 24 H 1.09002 * 109.47188 * 312.94665 * 1 2 3 25 25 H 1.08999 * 109.47033 * 72.94973 * 1 2 3 26 26 H 1.09004 * 113.47361 * 105.36831 * 5 2 1 27 27 H 1.08996 * 113.52665 * 334.91759 * 5 2 1 28 28 H 1.08007 * 119.80030 * 179.72354 * 9 8 7 29 29 H 0.96994 * 119.99814 * 180.02562 * 14 13 11 30 30 H 1.08007 * 120.79831 * 179.97438 * 19 10 9 31 31 H 1.09000 * 113.47701 * 87.75270 * 22 6 5 32 32 H 1.09002 * 113.47762 * 218.22487 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1113 1.3524 0.0000 4 7 2.5598 2.3960 0.0011 5 6 2.1586 -0.9543 -1.0251 6 7 3.1647 -1.3023 -0.0045 7 6 3.4233 -2.6620 -0.0064 8 7 2.7829 -3.4467 -0.8645 9 6 2.9932 -4.7439 -0.9050 10 6 3.9164 -5.3435 -0.0275 11 6 4.1447 -6.7363 -0.0675 12 1 3.9346 -7.2923 -0.9693 13 6 4.6429 -7.3961 1.0606 14 7 4.5755 -6.8242 2.2363 15 14 5.4044 -9.0932 0.8900 16 1 6.5695 -9.0230 -0.0282 17 1 5.8530 -9.5708 2.2225 18 1 4.3966 -10.0349 0.3396 19 6 4.6107 -4.5279 0.8938 20 6 4.3551 -3.1853 0.8947 21 17 5.1812 -2.1382 2.0059 22 6 2.1628 -0.9562 1.0208 23 1 -0.3634 -1.0015 0.2303 24 1 -0.3634 0.7002 0.7523 25 1 -0.3633 0.3013 -0.9825 26 1 2.5782 -0.4446 -1.8925 27 1 1.5110 -1.7874 -1.2983 28 1 2.4514 -5.3536 -1.6130 29 1 4.9213 -7.2816 3.0186 30 1 5.3255 -4.9553 1.5815 31 1 1.5157 -1.7895 1.2944 32 1 2.5860 -0.4481 1.8874 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163953802.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:51 Heat of formation + Delta-G solvation = 89.567041 kcal Electronic energy + Delta-G solvation = -18566.342279 eV Core-core repulsion = 15553.943582 eV Total energy + Delta-G solvation = -3012.398697 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.068 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.81978 -38.20977 -35.92211 -35.53466 -34.32480 -32.07872 -30.72228 -29.46684 -26.52411 -25.85371 -24.24230 -22.42544 -21.56730 -20.53471 -17.70470 -16.80856 -16.37641 -15.91883 -15.24671 -14.76782 -14.38389 -13.96074 -13.78280 -13.39300 -13.04472 -12.85263 -12.51893 -12.35723 -12.28366 -12.00345 -11.85067 -11.72150 -11.45262 -11.33029 -10.99332 -10.83915 -10.77709 -10.48960 -10.22366 -9.96540 -9.60865 -9.09340 -8.40998 -8.31644 -7.51733 -7.10727 -4.71332 2.22128 2.60317 2.80996 2.89627 2.91106 2.93047 2.97237 3.18652 3.67100 3.94968 4.18628 4.45708 4.52359 4.84564 5.22749 5.37037 5.52711 5.63529 5.73592 5.77277 5.95568 5.98597 6.05505 6.22559 6.34496 6.43238 6.63153 6.72560 6.84065 6.93868 7.43539 7.59857 7.71914 7.86931 8.12163 8.38016 8.39670 9.18323 9.78751 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.031475 B = 0.004902 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.382277 B = 5710.663597 C = 6255.047631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.017 4.017 3 C 0.250 3.750 4 N -0.442 5.442 5 C 0.037 3.963 6 N -0.404 5.404 7 C 0.112 3.888 8 N -0.467 5.467 9 C -0.009 4.009 10 C 0.070 3.930 11 C -0.435 4.435 12 H 0.089 0.911 13 C 0.072 3.928 14 N -0.776 5.776 15 Si 0.917 3.083 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.261 1.261 19 C -0.127 4.127 20 C -0.023 4.023 21 Cl -0.099 7.099 22 C 0.031 3.969 23 H 0.078 0.922 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.136 0.864 29 H 0.289 0.711 30 H 0.140 0.860 31 H 0.088 0.912 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 2.541 -0.802 5.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.021 4.021 3 C -0.068 4.068 4 N -0.117 5.117 5 C -0.093 4.093 6 N -0.123 5.123 7 C -0.117 4.117 8 N -0.178 5.178 9 C -0.173 4.173 10 C 0.065 3.935 11 C -0.463 4.463 12 H 0.107 0.893 13 C -0.149 4.149 14 N -0.400 5.400 15 Si 0.740 3.260 16 H -0.184 1.184 17 H -0.200 1.200 18 H -0.186 1.186 19 C -0.153 4.153 20 C -0.053 4.053 21 Cl -0.071 7.071 22 C -0.098 4.098 23 H 0.097 0.903 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.133 0.867 28 H 0.153 0.847 29 H 0.101 0.899 30 H 0.157 0.843 31 H 0.106 0.894 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.264 4.870 -0.984 6.548 hybrid contribution 0.328 -1.987 0.774 2.158 sum -3.937 2.883 -0.210 4.884 Atomic orbital electron populations 1.21654 0.90482 1.03557 1.02890 1.19372 0.95782 0.84592 1.02331 1.28056 0.92530 0.93346 0.92832 1.81156 1.09189 1.12587 1.08746 1.23757 0.94062 0.96488 0.95011 1.66633 1.28159 1.13403 1.04120 1.18976 1.02646 0.89807 1.00314 1.66924 1.23293 1.06861 1.20686 1.22389 1.01338 0.89176 1.04378 1.18441 0.89830 0.94329 0.90948 1.19567 1.35618 0.92369 0.98789 0.89253 1.26062 0.93386 1.01015 0.94401 1.69790 1.31678 1.38942 0.99558 0.86198 0.80415 0.80535 0.78832 1.18447 1.20005 1.18580 1.21360 1.01803 0.89413 1.02725 1.20966 0.97942 0.91452 0.94926 1.98272 1.78358 1.68022 1.62465 1.23951 0.93416 0.96522 0.95949 0.90267 0.91833 0.91297 0.90008 0.86736 0.84677 0.89944 0.84281 0.89404 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 9.26 37.16 0.34 -0.87 16 2 C -0.02 -0.22 1.44 -156.76 -0.22 -0.44 16 3 C 0.25 3.77 14.47 -20.76 -0.30 3.47 16 4 N -0.44 -7.56 18.54 42.15 0.78 -6.78 16 5 C 0.04 0.56 6.51 -7.55 -0.05 0.51 16 6 N -0.40 -7.37 5.69 -182.54 -1.04 -8.41 16 7 C 0.11 2.36 5.85 -155.05 -0.91 1.46 16 8 N -0.47 -9.88 8.14 -11.75 -0.10 -9.98 16 9 C -0.01 -0.20 10.97 -16.74 -0.18 -0.39 16 10 C 0.07 1.65 5.59 -106.66 -0.60 1.05 16 11 C -0.43 -10.02 9.06 -37.85 -0.34 -10.36 16 12 H 0.09 1.92 7.90 -52.49 -0.41 1.51 16 13 C 0.07 1.60 5.17 -17.34 -0.09 1.51 16 14 N -0.78 -17.86 10.92 55.54 0.61 -17.26 16 15 Si 0.92 16.51 29.59 -169.99 -5.03 11.48 16 16 H -0.26 -4.71 7.11 56.52 0.40 -4.30 16 17 H -0.28 -4.89 7.11 56.52 0.40 -4.48 16 18 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 19 C -0.13 -3.01 8.53 -38.99 -0.33 -3.35 16 20 C -0.02 -0.50 6.29 -39.57 -0.25 -0.75 16 21 Cl -0.10 -2.00 28.23 -51.86 -1.46 -3.46 16 22 C 0.03 0.47 6.55 -7.54 -0.05 0.42 16 23 H 0.08 0.71 7.91 -51.93 -0.41 0.30 16 24 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 27 H 0.11 1.75 6.60 -51.93 -0.34 1.41 16 28 H 0.14 2.68 8.06 -52.48 -0.42 2.25 16 29 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 30 H 0.14 3.43 6.19 -52.48 -0.32 3.10 16 31 H 0.09 1.33 7.70 -51.93 -0.40 0.93 16 32 H 0.09 1.32 8.10 -51.93 -0.42 0.90 16 LS Contribution 297.25 15.07 4.48 4.48 Total: -1.00 -25.59 297.25 -7.88 -33.46 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -3.14 Total: 4.21 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -2.98 Total: -7.75 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.25 Total: -42.42 kcal Atomic # 14 Polarization: 16.51 SS G_CDS: -5.03 Total: 11.48 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -1.46 Total: -3.46 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -25.59 -7.88 -33.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163953802.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.030 kcal (2) G-P(sol) polarization free energy of solvation -25.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds