Wall clock time and date at job start Mon Mar 30 2020 01:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39211 * 119.48655 * 2 1 4 4 C 1.36420 * 120.90027 * 179.97438 * 3 2 1 5 5 C 1.39898 * 119.51363 * 359.74512 * 4 3 2 6 6 C 1.41671 * 119.67883 * 0.49986 * 5 4 3 7 7 C 1.36334 * 119.49040 * 179.97438 * 2 1 3 8 8 N 1.34095 * 118.72492 * 179.72052 * 6 5 4 9 9 C 1.31382 * 120.46753 * 359.74657 * 8 6 5 10 10 Cl 1.73603 * 118.52785 * 179.97438 * 9 8 6 11 11 N 1.32377 * 122.94416 * 0.02562 * 9 8 6 12 12 C 1.32734 * 121.47474 * 0.02562 * 11 9 8 13 13 N 1.37834 * 120.90219 * 179.97438 * 12 11 9 14 14 C 1.46496 * 120.00367 * 89.25848 * 13 12 11 15 15 C 1.36834 * 119.99586 * 269.25270 * 13 12 11 16 16 H 1.08000 * 120.00450 * 0.46798 * 15 13 12 17 17 C 1.38928 * 120.00284 * 180.46648 * 15 13 12 18 18 N 1.31475 * 119.99623 * 344.20990 * 17 15 13 19 19 Si 1.86789 * 120.00377 * 164.20382 * 17 15 13 20 20 H 1.48495 * 109.47137 * 90.00242 * 19 17 15 21 21 H 1.48504 * 109.47411 * 210.00101 * 19 17 15 22 22 H 1.48502 * 109.47407 * 330.00044 * 19 17 15 23 23 H 1.09001 * 109.47491 * 270.02240 * 1 2 3 24 24 H 1.09008 * 109.47163 * 30.02278 * 1 2 3 25 25 H 1.09002 * 109.47218 * 150.01961 * 1 2 3 26 26 H 1.07999 * 119.54777 * 0.02562 * 3 2 1 27 27 H 1.08006 * 120.24560 * 179.97438 * 4 3 2 28 28 H 1.08007 * 120.20835 * 0.05071 * 7 2 1 29 29 H 1.09003 * 109.47188 * 5.34109 * 14 13 12 30 30 H 1.08996 * 109.47511 * 125.34032 * 14 13 12 31 31 H 1.08996 * 109.46902 * 245.34613 * 14 13 12 32 32 H 0.96998 * 120.00149 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1922 1.2118 0.0000 4 6 3.5560 1.2454 0.0005 5 6 4.2750 0.0454 0.0065 6 6 3.5797 -1.1890 0.0012 7 6 2.1781 -1.1867 0.0005 8 7 4.2879 -2.3276 0.0013 9 6 5.6014 -2.2951 0.0013 10 17 6.4679 -3.7995 0.0021 11 7 6.2936 -1.1668 0.0016 12 6 5.6911 0.0159 0.0025 13 7 6.4235 1.1835 0.0034 14 6 6.8267 1.7963 -1.2647 15 6 6.7740 1.7703 1.1888 16 1 6.4832 1.3146 2.1238 17 6 7.5040 2.9524 1.1897 18 7 8.1213 3.3445 0.0972 19 14 7.6082 3.9845 2.7430 20 1 8.7791 3.5518 3.5472 21 1 7.7608 5.4157 2.3771 22 1 6.3676 3.8069 3.5397 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6365 2.1379 0.0004 27 1 4.0768 2.1916 0.0001 28 1 1.6331 -2.1192 0.0001 29 1 6.3804 1.2454 -2.0926 30 1 6.4870 2.8316 -1.2922 31 1 7.9127 1.7678 -1.3529 32 1 8.6313 4.1696 0.0979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799685.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:24 Heat of formation + Delta-G solvation = 76.739576 kcal Electronic energy + Delta-G solvation = -18841.317715 eV Core-core repulsion = 15828.362778 eV Total energy + Delta-G solvation = -3012.954937 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.068 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.35567 -39.13275 -38.33453 -37.55094 -34.82637 -33.72893 -32.76966 -31.00707 -28.69623 -28.22893 -26.13534 -25.06219 -23.46840 -22.57851 -19.76342 -19.21258 -18.86045 -17.94987 -16.91633 -16.42863 -16.07541 -15.77736 -15.21373 -15.16392 -15.01693 -14.49868 -14.21051 -13.52575 -13.33736 -13.22905 -12.93457 -12.88840 -12.65480 -12.55450 -12.49842 -12.25477 -12.15144 -12.05634 -11.89226 -11.78145 -10.86713 -10.42155 -9.94146 -9.47607 -9.29122 -7.99248 -5.51728 -0.87740 -0.35982 0.34389 0.82817 1.46419 1.46912 1.57649 1.85395 2.29863 2.75236 2.94463 3.09475 3.32510 3.49013 3.72592 3.92792 4.09355 4.22386 4.32602 4.51022 4.59776 4.82758 4.93367 5.00620 5.15222 5.23280 5.25386 5.29538 5.45149 5.51431 5.58569 5.75627 5.99816 6.08305 6.85580 6.90838 7.57243 7.88191 9.00300 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.013458 B = 0.007406 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.998965 B = 3779.936600 C = 5287.499093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.026 4.026 3 C -0.119 4.119 4 C -0.055 4.055 5 C -0.187 4.187 6 C 0.159 3.841 7 C -0.124 4.124 8 N -0.521 5.521 9 C 0.367 3.633 10 Cl 0.016 6.984 11 N -0.581 5.581 12 C 0.499 3.501 13 N -0.558 5.558 14 C 0.187 3.813 15 C -0.285 4.285 16 H 0.068 0.932 17 C -0.024 4.024 18 N -0.923 5.923 19 Si 0.980 3.020 20 H -0.287 1.287 21 H -0.279 1.279 22 H -0.268 1.268 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.166 0.834 27 H 0.131 0.869 28 H 0.158 0.842 29 H 0.015 0.985 30 H 0.048 0.952 31 H 0.031 0.969 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.313 -4.561 -1.152 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.030 4.030 3 C -0.136 4.136 4 C -0.075 4.075 5 C -0.196 4.196 6 C 0.032 3.968 7 C -0.142 4.142 8 N -0.240 5.240 9 C 0.071 3.929 10 Cl 0.044 6.956 11 N -0.304 5.304 12 C 0.252 3.748 13 N -0.279 5.279 14 C 0.044 3.956 15 C -0.412 4.412 16 H 0.086 0.914 17 C -0.221 4.221 18 N -0.567 5.567 19 Si 0.806 3.194 20 H -0.214 1.214 21 H -0.204 1.204 22 H -0.193 1.193 23 H 0.110 0.890 24 H 0.109 0.891 25 H 0.103 0.897 26 H 0.183 0.817 27 H 0.148 0.852 28 H 0.176 0.824 29 H 0.034 0.966 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.692 -5.456 -1.212 15.719 hybrid contribution 1.007 0.840 0.654 1.465 sum -13.685 -4.616 -0.558 14.453 Atomic orbital electron populations 1.20994 0.86882 1.04902 1.04211 1.20251 0.98801 0.91351 0.92570 1.21329 0.92861 0.99679 0.99781 1.21061 0.95071 0.96484 0.94910 1.20250 0.94893 0.97049 1.07358 1.19202 0.95684 0.86064 0.95830 1.20738 0.89027 1.00414 1.04063 1.68190 1.06149 1.30914 1.18719 1.23011 0.86662 0.88197 0.95055 1.98372 1.74913 1.26203 1.96151 1.68170 1.44359 0.98821 1.19047 1.19048 0.88478 0.85505 0.81723 1.41593 1.61756 1.19123 1.05462 1.20932 0.98165 0.95194 0.81335 1.19233 1.33191 1.04735 0.84067 0.91360 1.25619 0.96737 0.98858 1.00890 1.70298 1.33539 1.24161 1.28734 0.85112 0.78172 0.77846 0.78268 1.21359 1.20399 1.19256 0.89018 0.89123 0.89725 0.81693 0.85156 0.82418 0.96628 0.93326 0.95007 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.98 71.23 0.71 -0.63 16 2 C -0.03 -0.57 5.85 -20.08 -0.12 -0.69 16 3 C -0.12 -2.90 9.59 22.08 0.21 -2.68 16 4 C -0.05 -1.88 9.58 22.25 0.21 -1.66 16 5 C -0.19 -7.60 5.76 -21.19 -0.12 -7.72 16 6 C 0.16 5.84 6.61 40.11 0.27 6.11 16 7 C -0.12 -3.33 9.61 22.29 0.21 -3.11 16 8 N -0.52 -20.47 10.40 -184.65 -1.92 -22.39 16 9 C 0.37 15.50 8.15 180.83 1.47 16.98 16 10 Cl 0.02 0.56 29.24 -2.72 -0.08 0.48 16 11 N -0.58 -28.00 10.38 -187.42 -1.95 -29.95 16 12 C 0.50 23.89 6.03 133.98 0.81 24.70 16 13 N -0.56 -28.80 2.29 -539.59 -1.24 -30.04 16 14 C 0.19 9.28 8.96 127.77 1.14 10.43 16 15 C -0.28 -15.54 9.76 84.08 0.82 -14.72 16 16 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 17 C -0.02 -1.27 5.32 84.91 0.45 -0.82 16 18 N -0.92 -50.87 9.74 21.66 0.21 -50.66 16 19 Si 0.98 42.71 29.58 68.60 2.03 44.74 16 20 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.09 0.78 8.08 -2.38 -0.02 0.76 16 25 H 0.08 0.82 8.07 -2.39 -0.02 0.80 16 26 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 27 H 0.13 4.88 7.66 -2.91 -0.02 4.86 16 28 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 29 H 0.02 0.69 7.90 -2.39 -0.02 0.67 16 30 H 0.05 2.44 7.17 -2.39 -0.02 2.42 16 31 H 0.03 1.73 7.01 -2.39 -0.02 1.72 16 32 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -64.43 294.49 4.28 -60.15 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: 1.15 Total: 1.49 kcal Atomic # 6 Polarization: 20.10 SS G_CDS: 6.07 Total: 26.17 kcal Atomic # 7 Polarization: -128.14 SS G_CDS: -4.89 Total: -133.03 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 17 Polarization: 0.56 SS G_CDS: -0.08 Total: 0.48 kcal Total: -64.43 4.28 -60.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799685.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.889 kcal (2) G-P(sol) polarization free energy of solvation -64.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds