Wall clock time and date at job start Mon Mar 30 2020 02:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99712 * 2 1 4 4 O 1.20823 * 120.00317 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99597 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47136 * 179.97438 * 5 3 2 7 7 S 1.81393 * 109.47501 * 180.02562 * 6 5 3 8 8 O 1.42102 * 110.54287 * 68.37682 * 7 6 5 9 9 O 1.42100 * 110.54135 * 291.62451 * 7 6 5 10 10 N 1.65596 * 104.45231 * 180.02562 * 7 6 5 11 11 C 1.47586 * 134.49190 * 89.99576 * 10 7 6 12 12 C 1.53950 * 86.11354 * 155.36007 * 11 10 7 13 13 C 1.50706 * 113.73627 * 137.95493 * 12 11 10 14 14 H 1.07995 * 120.00167 * 1.64697 * 13 12 11 15 15 C 1.37879 * 119.99394 * 181.92396 * 13 12 11 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47487 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47233 * 120.00158 * 17 15 13 20 20 H 1.48508 * 109.46883 * 239.99963 * 17 15 13 21 21 C 1.47813 * 134.45968 * 269.86716 * 10 7 6 22 22 H 1.08994 * 109.46780 * 60.00080 * 1 2 3 23 23 H 1.09000 * 109.47068 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46890 * 300.00188 * 1 2 3 25 25 H 1.08998 * 109.47346 * 60.00393 * 5 3 2 26 26 H 1.09002 * 109.47555 * 299.99927 * 5 3 2 27 27 H 1.09003 * 109.47015 * 59.99812 * 6 5 3 28 28 H 1.09002 * 109.46913 * 300.00410 * 6 5 3 29 29 H 1.09008 * 113.76654 * 41.06239 * 11 10 7 30 30 H 1.08993 * 113.87299 * 269.67717 * 11 10 7 31 31 H 1.09000 * 113.74485 * 269.15566 * 12 11 10 32 32 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 33 33 H 1.09002 * 113.76703 * 90.37808 * 21 10 7 34 34 H 1.08998 * 113.83277 * 318.91786 * 21 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0002 2.7421 -0.0002 7 16 5.8116 2.8371 -0.0002 8 8 6.3352 2.3729 -1.2370 9 8 6.3352 2.3742 1.2370 10 7 6.1403 4.4601 -0.0004 11 6 6.3456 5.4739 1.0523 12 6 7.1564 6.2511 -0.0005 13 6 6.8869 7.7339 -0.0006 14 1 6.1987 8.1577 0.7157 15 6 7.5147 8.5486 -0.9189 16 7 8.3483 8.0317 -1.7950 17 14 7.1812 10.3865 -0.9185 18 1 6.2120 10.7136 0.1580 19 1 8.4506 11.1200 -0.6819 20 1 6.6153 10.7872 -2.2318 21 6 6.3482 5.4742 -1.0555 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 3.9564 0.7807 -0.8892 26 1 3.9558 0.7810 0.8908 27 1 3.6100 3.2368 0.8893 28 1 3.6107 3.2356 -0.8906 29 1 6.9424 5.1198 1.8929 30 1 5.4309 5.9787 1.3630 31 1 8.2200 6.0126 0.0007 32 1 8.7896 8.6048 -2.4412 33 1 5.4332 5.9783 -1.3667 34 1 6.9470 5.1203 -1.8947 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188344686.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:05 Heat of formation + Delta-G solvation = -149.550938 kcal Electronic energy + Delta-G solvation = -19470.936393 eV Core-core repulsion = 16110.610798 eV Total energy + Delta-G solvation = -3360.325595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.60259 -39.65915 -38.17346 -37.76283 -37.05317 -34.54639 -34.50576 -30.05731 -29.07142 -26.77733 -26.54817 -25.89425 -22.01876 -21.42555 -19.78832 -19.01336 -18.75086 -18.19042 -17.92603 -17.53755 -17.12001 -17.00360 -16.42285 -15.66543 -15.60370 -14.66575 -14.64197 -14.43362 -14.10868 -13.84867 -13.51299 -13.28541 -13.19451 -13.13071 -13.03436 -12.95583 -12.80346 -12.66770 -12.24097 -12.13035 -12.07162 -11.87411 -11.68310 -11.03329 -10.86837 -10.52942 -9.77259 -8.10438 -6.21304 -0.83509 1.01497 1.47970 1.49366 1.52234 1.61951 1.73018 2.48928 2.84299 3.01107 3.18812 3.22052 3.66052 3.78053 4.06787 4.20449 4.27373 4.28930 4.33310 4.47992 4.66672 4.68217 4.69753 4.79271 4.84574 5.12759 5.17741 5.24818 5.67518 5.90280 5.92706 6.31473 6.57106 6.88762 7.48029 8.99509 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.028373 B = 0.003977 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.633298 B = 7038.865268 C = 7594.018569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.473 3.527 4 O -0.532 6.532 5 C -0.115 4.115 6 C -0.612 4.612 7 S 2.636 3.364 8 O -0.985 6.985 9 O -0.980 6.980 10 N -1.038 6.038 11 C 0.131 3.869 12 C 0.017 3.983 13 C -0.525 4.525 14 H 0.072 0.928 15 C 0.015 3.985 16 N -0.923 5.923 17 Si 0.958 3.042 18 H -0.261 1.261 19 H -0.286 1.286 20 H -0.284 1.284 21 C 0.136 3.864 22 H 0.062 0.938 23 H 0.135 0.865 24 H 0.063 0.937 25 H 0.142 0.858 26 H 0.145 0.855 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.083 0.917 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.017 -13.876 3.832 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.316 3.684 4 O -0.422 6.422 5 C -0.153 4.153 6 C -0.742 4.742 7 S 2.734 3.266 8 O -0.976 6.976 9 O -0.970 6.970 10 N -0.877 5.877 11 C 0.006 3.994 12 C -0.005 4.005 13 C -0.564 4.564 14 H 0.090 0.910 15 C -0.185 4.185 16 N -0.562 5.562 17 Si 0.784 3.216 18 H -0.185 1.185 19 H -0.212 1.212 20 H -0.210 1.210 21 C 0.011 3.989 22 H 0.081 0.919 23 H 0.153 0.847 24 H 0.082 0.918 25 H 0.160 0.840 26 H 0.163 0.837 27 H 0.168 0.832 28 H 0.163 0.837 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.546 -14.498 3.696 20.183 hybrid contribution -0.746 1.351 -0.397 1.593 sum -14.292 -13.148 3.300 19.698 Atomic orbital electron populations 1.23607 0.74441 1.05959 1.02661 1.86495 1.25263 1.32244 1.83633 1.23551 0.91950 0.81404 0.71511 1.90685 1.67720 1.37357 1.46414 1.21236 0.89489 0.94920 1.09682 1.30550 1.25868 1.03680 1.14069 1.04098 0.77765 0.71806 0.72903 1.93536 1.77929 1.79771 1.46402 1.93528 1.77845 1.79731 1.45941 1.60204 1.85534 1.23567 1.18396 1.23011 0.99879 0.85268 0.91254 1.20512 0.94411 0.93667 0.91872 1.21451 1.26015 0.92278 1.16626 0.91026 1.25815 0.94523 1.02967 0.95191 1.70094 1.29499 1.37024 1.19543 0.85507 0.77891 0.80192 0.78017 1.18475 1.21236 1.20991 1.23014 0.99268 0.85029 0.91625 0.91933 0.84735 0.91813 0.84020 0.83671 0.83158 0.83701 0.90666 0.88616 0.95158 0.92880 0.89922 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.52 16 2 O -0.36 -6.43 10.57 -51.43 -0.54 -6.98 16 3 C 0.47 10.07 7.96 71.24 0.57 10.63 16 4 O -0.53 -14.58 15.73 21.97 0.35 -14.23 16 5 C -0.11 -2.08 5.82 29.85 0.17 -1.90 16 6 C -0.61 -13.64 5.47 71.98 0.39 -13.24 16 7 S 2.64 82.03 5.93 -56.49 -0.34 81.69 16 8 O -0.99 -36.81 18.02 -127.65 -2.30 -39.12 16 9 O -0.98 -34.40 18.02 -127.65 -2.30 -36.70 16 10 N -1.04 -38.01 4.00 -529.18 -2.12 -40.12 16 11 C 0.13 4.85 8.47 86.49 0.73 5.59 16 12 C 0.02 0.79 3.60 -10.88 -0.04 0.76 16 13 C -0.52 -26.38 8.77 25.60 0.22 -26.16 16 14 H 0.07 3.40 7.81 -2.91 -0.02 3.38 16 15 C 0.01 0.76 5.46 84.66 0.46 1.22 16 16 N -0.92 -51.79 13.29 21.45 0.28 -51.51 16 17 Si 0.96 41.15 29.54 68.60 2.03 43.18 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 19 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 21 C 0.14 5.82 8.48 86.44 0.73 6.55 16 22 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 23 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.06 0.81 8.13 -2.38 -0.02 0.79 16 25 H 0.14 2.00 8.14 -2.39 -0.02 1.99 16 26 H 0.15 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.15 3.08 8.10 -2.39 -0.02 3.06 16 28 H 0.14 3.17 8.10 -2.39 -0.02 3.15 16 29 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 30 H 0.10 3.11 8.09 -2.39 -0.02 3.09 16 31 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 33 H 0.08 3.31 8.09 -2.39 -0.02 3.29 16 34 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -70.41 314.62 0.60 -69.81 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.09 Total: 9.01 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 4.44 Total: -15.03 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -1.83 Total: -91.63 kcal Atomic # 8 Polarization: -92.22 SS G_CDS: -4.80 Total: -97.02 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: 82.03 SS G_CDS: -0.34 Total: 81.69 kcal Total: -70.41 0.60 -69.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188344686.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.745 kcal (2) G-P(sol) polarization free energy of solvation -70.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds