Wall clock time and date at job start Mon Mar 30 2020 02:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36847 * 119.99803 * 2 1 4 4 H 1.07993 * 119.99870 * 208.19966 * 3 2 1 5 5 C 1.39051 * 119.99857 * 28.19893 * 3 2 1 6 6 N 1.31367 * 120.00169 * 22.53561 * 5 3 2 7 7 Si 1.86798 * 119.99892 * 202.54029 * 5 3 2 8 8 H 1.48497 * 109.47258 * 59.99698 * 7 5 3 9 9 H 1.48498 * 109.47409 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46995 * 299.99850 * 7 5 3 11 11 C 1.34769 * 120.00402 * 180.02562 * 2 1 3 12 12 O 1.21668 * 120.00177 * 184.72610 * 11 2 1 13 13 C 1.47025 * 119.99809 * 4.71612 * 11 2 1 14 14 C 1.38520 * 126.89556 * 4.03541 * 13 11 2 15 15 C 1.39646 * 105.35089 * 180.09706 * 14 13 11 16 16 C 1.50700 * 126.06067 * 179.85048 * 15 14 13 17 17 F 1.39902 * 109.46947 * 184.71700 * 16 15 14 18 18 F 1.39895 * 109.47228 * 64.72115 * 16 15 14 19 19 F 1.39896 * 109.47104 * 304.71563 * 16 15 14 20 20 N 1.30884 * 107.87539 * 359.58841 * 15 14 13 21 21 N 1.28444 * 110.95373 * 0.26467 * 20 15 14 22 22 C 1.46495 * 125.19538 * 179.97438 * 21 20 15 23 23 H 1.08997 * 109.46814 * 234.36190 * 1 2 3 24 24 H 1.08998 * 109.47198 * 354.36164 * 1 2 3 25 25 H 1.08999 * 109.46740 * 114.36098 * 1 2 3 26 26 H 0.96996 * 119.99919 * 179.97438 * 6 5 3 27 27 H 1.07997 * 127.32470 * 359.95554 * 14 13 11 28 28 H 1.09005 * 109.46928 * 85.75536 * 22 21 20 29 29 H 1.08994 * 109.47265 * 205.75905 * 22 21 20 30 30 H 1.09002 * 109.47323 * 325.76240 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1852 0.0000 4 1 3.1330 1.2407 -0.4420 5 6 1.5777 2.3179 0.5690 6 7 0.6301 2.1933 1.4704 7 14 2.1572 4.0167 0.0517 8 1 1.9315 4.1943 -1.4052 9 1 1.3960 5.0487 0.8005 10 1 3.6053 4.1575 0.3491 11 6 2.1390 -1.1671 -0.0005 12 8 3.3525 -1.1689 0.0863 13 6 1.4076 -2.4382 -0.1058 14 6 0.0441 -2.6005 -0.2882 15 6 -0.1626 -3.9811 -0.3220 16 6 -1.4884 -4.6755 -0.4986 17 9 -1.3112 -6.0576 -0.3730 18 9 -2.0018 -4.3847 -1.7670 19 9 -2.3826 -4.2291 0.4802 20 7 1.0000 -4.5650 -0.1788 21 7 1.9375 -3.6965 -0.0502 22 6 3.3578 -4.0075 0.1292 23 1 -0.3633 -0.5988 0.8352 24 1 -0.3633 1.0227 0.1010 25 1 -0.3633 -0.4239 -0.9362 26 1 0.2317 2.9835 1.8676 27 1 -0.7010 -1.8243 -0.3818 28 1 3.8246 -4.1493 -0.8455 29 1 3.8469 -3.1844 0.6501 30 1 3.4585 -4.9202 0.7165 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189598839.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:43 Heat of formation + Delta-G solvation = -98.066183 kcal Electronic energy + Delta-G solvation = -21871.811557 eV Core-core repulsion = 17868.710568 eV Total energy + Delta-G solvation = -4003.100989 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.16773 -48.67709 -48.67174 -43.85597 -40.20593 -36.98510 -34.88857 -33.97406 -32.08884 -29.66790 -28.39846 -27.13185 -26.02849 -23.88879 -22.68803 -21.15042 -19.57331 -19.38718 -19.19090 -18.54080 -17.65550 -17.51018 -17.43948 -16.61493 -15.94125 -15.67507 -15.52470 -15.46124 -15.26839 -15.09331 -14.81378 -14.80731 -14.54269 -13.86505 -13.76608 -13.74061 -13.44670 -13.27154 -13.11400 -12.59099 -12.54348 -12.12915 -11.89876 -11.03148 -10.69125 -10.58254 -10.27806 -9.71676 -8.48716 -6.09107 0.14958 0.86309 1.01451 1.44040 1.46912 1.55878 1.68375 2.21134 2.27699 2.53700 2.87143 2.90219 2.99852 3.35968 3.63841 3.73482 4.07991 4.26213 4.32739 4.35152 4.54216 4.66040 4.75697 5.01259 5.24474 5.38628 5.43026 5.99559 6.31622 6.60134 6.99411 7.23168 7.81542 8.54525 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.025296 B = 0.005386 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.627155 B = 5197.240855 C = 6008.541534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.420 5.420 3 C -0.347 4.347 4 H 0.081 0.919 5 C 0.008 3.992 6 N -0.874 5.874 7 Si 0.993 3.007 8 H -0.262 1.262 9 H -0.270 1.270 10 H -0.274 1.274 11 C 0.489 3.511 12 O -0.620 6.620 13 C -0.010 4.010 14 C -0.174 4.174 15 C -0.087 4.087 16 C 0.573 3.427 17 F -0.170 7.170 18 F -0.166 7.166 19 F -0.165 7.165 20 N -0.240 5.240 21 N -0.248 5.248 22 C 0.080 3.920 23 H 0.060 0.940 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.282 0.718 27 H 0.201 0.799 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.761 -8.894 -3.247 10.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.135 5.135 3 C -0.475 4.475 4 H 0.099 0.901 5 C -0.197 4.197 6 N -0.510 5.510 7 Si 0.815 3.185 8 H -0.187 1.187 9 H -0.195 1.195 10 H -0.199 1.199 11 C 0.279 3.721 12 O -0.509 6.509 13 C -0.138 4.138 14 C -0.202 4.202 15 C -0.244 4.244 16 C 0.517 3.483 17 F -0.151 7.151 18 F -0.147 7.147 19 F -0.146 7.146 20 N -0.076 5.076 21 N -0.038 5.038 22 C -0.058 4.058 23 H 0.078 0.922 24 H 0.109 0.891 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.218 0.782 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.696 -9.830 -2.998 10.922 hybrid contribution -0.171 1.349 -0.014 1.360 sum -3.866 -8.481 -3.012 9.796 Atomic orbital electron populations 1.22365 0.79713 1.05172 0.99635 1.43461 1.06847 1.03854 1.59344 1.19632 1.03966 0.85371 1.38502 0.90075 1.26211 0.96675 1.03617 0.93196 1.70024 1.26543 1.32719 1.21682 0.85011 0.78406 0.75986 0.79091 1.18661 1.19466 1.19942 1.17115 0.86798 0.82598 0.85629 1.90560 1.14516 1.86973 1.58814 1.21702 0.93713 0.87981 1.10370 1.23041 0.95183 0.95779 1.06177 1.21798 0.93158 0.93649 1.15749 1.16469 0.81830 0.75808 0.74187 1.93205 1.95429 1.30814 1.95629 1.93231 1.87967 1.93213 1.40293 1.93235 1.69562 1.89162 1.62663 1.72942 0.96179 1.20808 1.17701 1.45945 1.09019 1.01729 1.47064 1.22662 0.72065 1.05362 1.05730 0.92193 0.89123 0.91170 0.90844 0.78235 0.87981 0.88054 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 3.02 7.73 127.77 0.99 4.01 16 2 N -0.42 -20.75 2.98 -663.11 -1.97 -22.73 16 3 C -0.35 -18.44 9.07 84.11 0.76 -17.67 16 4 H 0.08 4.55 7.63 -2.91 -0.02 4.53 16 5 C 0.01 0.40 4.80 84.96 0.41 0.81 16 6 N -0.87 -43.49 11.27 21.68 0.24 -43.24 16 7 Si 0.99 38.79 29.61 68.60 2.03 40.83 16 8 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 9 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 10 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 11 C 0.49 23.74 7.60 86.55 0.66 24.39 16 12 O -0.62 -32.98 14.43 -4.25 -0.06 -33.04 16 13 C -0.01 -0.41 6.86 40.77 0.28 -0.13 16 14 C -0.17 -6.06 8.86 22.68 0.20 -5.86 16 15 C -0.09 -2.84 6.50 43.04 0.28 -2.56 16 16 C 0.57 15.98 3.51 71.24 0.25 16.23 16 17 F -0.17 -4.68 17.14 44.97 0.77 -3.91 16 18 F -0.17 -4.40 17.30 44.97 0.78 -3.62 16 19 F -0.16 -4.45 17.30 44.97 0.78 -3.67 16 20 N -0.24 -8.19 11.68 -47.50 -0.55 -8.75 16 21 N -0.25 -8.83 3.75 -356.04 -1.34 -10.16 16 22 C 0.08 2.26 10.91 127.77 1.39 3.66 16 23 H 0.06 2.35 6.75 -2.39 -0.02 2.33 16 24 H 0.09 3.98 5.52 -2.39 -0.01 3.96 16 25 H 0.07 2.41 6.27 -2.39 -0.01 2.40 16 26 H 0.28 12.97 8.31 -92.71 -0.77 12.20 16 27 H 0.20 6.20 4.33 -2.91 -0.01 6.18 16 28 H 0.10 2.50 8.14 -2.38 -0.02 2.49 16 29 H 0.10 3.35 6.15 -2.39 -0.01 3.33 16 30 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -61.16 273.87 7.11 -54.04 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.22 Total: 11.39 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: 5.22 Total: 22.86 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -3.62 Total: -84.88 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.06 Total: -33.04 kcal Atomic # 9 Polarization: -13.53 SS G_CDS: 2.33 Total: -11.20 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.83 kcal Total: -61.16 7.11 -54.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189598839.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.024 kcal (2) G-P(sol) polarization free energy of solvation -61.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds