Wall clock time and date at job start Mon Mar 30 2020 01:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 119.99903 * 2 1 4 4 H 1.48505 * 109.47256 * 269.99623 * 3 2 1 5 5 H 1.48498 * 109.47356 * 30.00203 * 3 2 1 6 6 H 1.48504 * 109.47015 * 150.00157 * 3 2 1 7 7 C 1.37880 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99634 * 359.97438 * 7 2 1 9 9 S 1.76191 * 120.00162 * 180.02562 * 7 2 1 10 10 O 1.42107 * 106.40325 * 66.45644 * 9 7 2 11 11 O 1.42098 * 106.40003 * 293.53837 * 9 7 2 12 12 N 1.65600 * 107.22035 * 179.97438 * 9 7 2 13 13 C 1.47176 * 121.04450 * 89.99784 * 12 9 7 14 14 C 1.53292 * 108.46517 * 128.89022 * 13 12 9 15 15 O 1.43060 * 109.22452 * 52.91161 * 14 13 12 16 16 C 1.42204 * 114.37991 * 298.64362 * 15 14 13 17 17 C 1.53958 * 110.45844 * 298.08658 * 16 15 14 18 18 C 1.54610 * 103.88797 * 241.03553 * 17 16 15 19 19 O 1.44472 * 104.81761 * 23.88798 * 18 17 16 20 20 C 1.44556 * 105.36288 * 319.84087 * 19 18 17 21 21 C 1.47268 * 121.04897 * 270.02439 * 12 9 7 22 22 H 0.97001 * 119.99961 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.63664 * 248.58121 * 13 12 9 24 24 H 1.08999 * 109.63516 * 9.19893 * 13 12 9 25 25 H 1.09000 * 109.51098 * 172.84033 * 14 13 12 26 26 H 1.09000 * 109.51316 * 292.98971 * 14 13 12 27 27 H 1.09007 * 110.54408 * 359.63864 * 17 16 15 28 28 H 1.09004 * 110.54478 * 122.43210 * 17 16 15 29 29 H 1.09006 * 110.36876 * 265.05629 * 18 17 16 30 30 H 1.08993 * 110.46675 * 142.77546 * 18 17 16 31 31 H 1.09001 * 110.39352 * 281.19163 * 20 19 18 32 32 H 1.09002 * 110.48830 * 158.85354 * 20 19 18 33 33 H 1.09000 * 109.63522 * 349.18224 * 21 12 9 34 34 H 1.08999 * 109.63640 * 109.59769 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 16 3.7665 -1.1941 0.0001 10 8 4.1674 -0.6504 1.2504 11 8 4.1682 -0.6489 -1.2491 12 7 4.2568 -2.7759 0.0000 13 6 4.4819 -3.5006 -1.2610 14 6 5.8685 -4.1518 -1.2059 15 8 5.9757 -4.9313 -0.0111 16 6 5.8446 -4.1836 1.1913 17 6 6.9681 -3.1364 1.2991 18 6 7.7240 -3.5345 2.5877 19 8 7.4398 -4.9400 2.7636 20 6 6.0454 -5.0953 2.4155 21 6 4.4806 -3.5018 1.2616 22 1 -0.4850 0.8401 -0.0004 23 1 3.7201 -4.2707 -1.3820 24 1 4.4378 -2.8029 -2.0973 25 1 6.0028 -4.7964 -2.0745 26 1 6.6349 -3.3768 -1.2049 27 1 7.6292 -3.1944 0.4343 28 1 6.5493 -2.1346 1.3951 29 1 7.3516 -2.9628 3.4379 30 1 8.7954 -3.3764 2.4653 31 1 5.4098 -4.7706 3.2393 32 1 5.8300 -6.1319 2.1564 33 1 4.4642 -2.8004 2.0957 34 1 3.7000 -4.2504 1.3969 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952732.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:59 Heat of formation + Delta-G solvation = -182.444176 kcal Electronic energy + Delta-G solvation = -21263.125144 eV Core-core repulsion = 17901.373192 eV Total energy + Delta-G solvation = -3361.751953 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.54417 -38.77804 -37.82484 -36.57611 -35.82212 -35.21376 -33.33881 -31.09673 -28.95183 -28.59774 -26.53003 -24.13312 -23.83592 -21.06570 -20.53493 -19.32953 -18.84442 -18.14355 -17.63062 -17.18448 -16.89057 -16.35982 -16.03344 -15.81107 -15.56848 -15.36128 -15.12352 -15.02501 -14.75696 -13.80553 -13.60128 -13.53629 -13.30965 -13.01550 -12.79912 -12.72342 -12.64097 -12.50059 -12.41340 -12.01973 -11.93105 -11.43476 -11.38387 -11.30485 -11.08042 -10.76861 -9.72272 -9.01056 -7.57947 -0.01426 1.01338 1.10298 1.16754 1.84508 2.27677 2.37298 2.56746 2.94998 3.29116 3.44658 3.60280 3.77620 3.86743 3.97770 4.04727 4.16640 4.28498 4.35123 4.38695 4.54906 4.59712 4.64555 4.72214 4.79820 4.81920 4.86759 5.02236 5.08465 5.34706 5.63852 5.72055 5.96351 6.14805 6.48713 8.16884 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.030774 B = 0.006676 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.640960 B = 4192.993640 C = 4411.692527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.107 3.893 3 Si 0.824 3.176 4 H -0.239 1.239 5 H -0.219 1.219 6 H -0.226 1.226 7 C -1.041 5.041 8 H 0.102 0.898 9 S 2.697 3.303 10 O -1.019 7.019 11 O -1.023 7.023 12 N -1.001 6.001 13 C 0.077 3.923 14 C 0.050 3.950 15 O -0.366 6.366 16 C 0.077 3.923 17 C -0.189 4.189 18 C 0.049 3.951 19 O -0.384 6.384 20 C 0.062 3.938 21 C 0.097 3.903 22 H 0.292 0.708 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.140 0.860 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.810 -8.327 1.923 14.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.110 4.110 3 Si 0.640 3.360 4 H -0.162 1.162 5 H -0.141 1.141 6 H -0.148 1.148 7 C -1.173 5.173 8 H 0.121 0.879 9 S 2.799 3.201 10 O -1.009 7.009 11 O -1.013 7.013 12 N -0.840 5.840 13 C -0.048 4.048 14 C -0.027 4.027 15 O -0.284 6.284 16 C 0.035 3.965 17 C -0.227 4.227 18 C -0.027 4.027 19 O -0.303 6.303 20 C -0.015 4.015 21 C -0.029 4.029 22 H 0.102 0.898 23 H 0.104 0.896 24 H 0.115 0.885 25 H 0.158 0.842 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.129 0.871 31 H 0.114 0.886 32 H 0.135 0.865 33 H 0.116 0.884 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.364 -7.852 1.995 14.782 hybrid contribution -1.250 1.040 -0.314 1.656 sum 11.114 -6.812 1.681 13.144 Atomic orbital electron populations 1.70016 1.07517 1.30561 1.40240 1.25203 0.95653 1.01514 0.88594 0.87507 0.83005 0.82750 0.82691 1.16219 1.14059 1.14838 1.31075 1.18244 1.01526 1.66457 0.87930 1.00622 0.75626 0.71383 0.72470 1.93418 1.84933 1.76923 1.45600 1.93364 1.84969 1.76996 1.45993 1.57481 1.84051 1.30224 1.12211 1.22309 0.99446 0.97653 0.85398 1.23144 0.94630 0.96515 0.88432 1.87820 1.92771 1.34695 1.13118 1.22748 0.93489 0.92317 0.87905 1.23592 0.98428 0.99640 1.01065 1.23516 1.01749 0.81884 0.95596 1.89134 1.26491 1.25694 1.88989 1.23422 0.83605 1.01433 0.93031 1.22106 0.97456 0.97331 0.85990 0.89765 0.89561 0.88472 0.84235 0.92551 0.89269 0.91050 0.90847 0.87080 0.88567 0.86516 0.88430 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.22 13.96 21.45 0.30 -48.92 16 2 C 0.11 6.12 5.47 84.65 0.46 6.59 16 3 Si 0.82 40.47 26.54 68.60 1.82 42.29 16 4 H -0.24 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.22 -9.45 7.11 99.48 0.71 -8.74 16 6 H -0.23 -11.28 5.61 99.48 0.56 -10.73 16 7 C -1.04 -58.18 10.29 67.73 0.70 -57.48 16 8 H 0.10 5.92 8.06 -2.91 -0.02 5.90 16 9 S 2.70 130.67 4.25 -56.49 -0.24 130.43 16 10 O -1.02 -51.67 14.65 -128.00 -1.88 -53.54 16 11 O -1.02 -52.36 15.46 -128.00 -1.98 -54.34 16 12 N -1.00 -37.37 3.24 -512.46 -1.66 -39.02 16 13 C 0.08 2.37 6.70 86.35 0.58 2.95 16 14 C 0.05 1.25 6.70 72.08 0.48 1.73 16 15 O -0.37 -9.85 10.18 -148.98 -1.52 -11.37 16 16 C 0.08 2.09 1.04 -10.27 -0.01 2.08 16 17 C -0.19 -5.05 5.78 31.47 0.18 -4.87 16 18 C 0.05 1.09 7.65 72.53 0.55 1.65 16 19 O -0.38 -9.63 11.65 -148.98 -1.74 -11.37 16 20 C 0.06 1.41 6.92 72.30 0.50 1.91 16 21 C 0.10 3.06 5.05 86.12 0.43 3.49 16 22 H 0.29 15.11 8.31 -92.71 -0.77 14.34 16 23 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.10 3.12 6.95 -2.39 -0.02 3.10 16 25 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.06 1.41 6.53 -2.39 -0.02 1.39 16 27 H 0.09 2.25 6.66 -2.38 -0.02 2.23 16 28 H 0.07 2.19 7.67 -2.39 -0.02 2.17 16 29 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.10 1.85 7.84 -2.39 -0.02 1.83 16 32 H 0.12 2.35 8.08 -2.39 -0.02 2.33 16 33 H 0.10 3.21 6.85 -2.39 -0.02 3.19 16 34 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -68.58 283.00 -2.04 -70.62 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.96 Total: 17.17 kcal Atomic # 6 Polarization: -45.84 SS G_CDS: 3.88 Total: -41.95 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -1.36 Total: -87.94 kcal Atomic # 8 Polarization: -123.51 SS G_CDS: -7.11 Total: -130.62 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 1.82 Total: 42.29 kcal Atomic # 16 Polarization: 130.67 SS G_CDS: -0.24 Total: 130.43 kcal Total: -68.58 -2.04 -70.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952732.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.822 kcal (2) G-P(sol) polarization free energy of solvation -68.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds