Wall clock time and date at job start Mon Mar 30 2020 02:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00062 * 2 1 4 4 O 1.20827 * 120.00187 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00027 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47277 * 174.25664 * 5 3 2 7 7 H 1.09003 * 109.99461 * 53.18836 * 6 5 3 8 8 C 1.54325 * 109.88421 * 292.10045 * 6 5 3 9 9 C 1.55156 * 102.94272 * 218.38825 * 8 6 5 10 10 C 1.54691 * 101.67502 * 35.33299 * 9 8 6 11 11 N 1.47019 * 109.88435 * 174.28568 * 6 5 3 12 12 S 1.65590 * 125.65196 * 298.32166 * 11 6 5 13 13 O 1.42104 * 106.40232 * 341.37545 * 12 11 6 14 14 O 1.42100 * 106.40659 * 208.44987 * 12 11 6 15 15 C 1.76204 * 107.21792 * 94.91284 * 12 11 6 16 16 H 1.08002 * 119.99609 * 0.02562 * 15 12 11 17 17 C 1.37873 * 120.00031 * 180.27658 * 15 12 11 18 18 N 1.31519 * 120.00014 * 179.72020 * 17 15 12 19 19 Si 1.86803 * 120.00127 * 359.72775 * 17 15 12 20 20 H 1.48490 * 109.47261 * 89.99986 * 19 17 15 21 21 H 1.48503 * 109.46952 * 210.00171 * 19 17 15 22 22 H 1.48504 * 109.46660 * 329.99450 * 19 17 15 23 23 H 1.09000 * 109.46925 * 299.99737 * 1 2 3 24 24 H 1.08995 * 109.47426 * 59.99823 * 1 2 3 25 25 H 1.09003 * 109.47077 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47254 * 54.25765 * 5 3 2 27 27 H 1.08999 * 109.47142 * 294.25609 * 5 3 2 28 28 H 1.09011 * 110.71719 * 336.74914 * 8 6 5 29 29 H 1.09001 * 110.72663 * 99.84156 * 8 6 5 30 30 H 1.09005 * 111.00424 * 153.57304 * 9 8 6 31 31 H 1.09001 * 111.00250 * 277.38526 * 9 8 6 32 32 H 1.09007 * 110.38797 * 204.36489 * 10 9 8 33 33 H 1.08997 * 110.23761 * 82.11983 * 10 9 8 34 34 H 0.97002 * 120.00066 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0005 2.7348 -0.1448 7 1 3.5137 3.3453 0.6158 8 6 3.6324 3.2555 -1.5502 9 6 4.8454 4.1504 -1.9179 10 6 6.0148 3.3760 -1.2655 11 7 5.4608 2.8379 -0.0097 12 16 6.3374 2.4248 1.3330 13 8 5.4185 2.3875 2.4164 14 8 7.4961 3.2474 1.3246 15 6 6.8996 0.7712 1.1004 16 1 6.6464 0.2368 0.1967 17 6 7.6585 0.1576 2.0744 18 7 8.0735 -1.0786 1.9032 19 14 8.0970 1.0821 3.6373 20 1 7.0462 0.8507 4.6606 21 1 9.4031 0.5957 4.1501 22 1 8.1906 2.5347 3.3434 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.9602 0.6945 -0.8350 27 1 3.9516 0.8721 0.9361 28 1 3.5352 2.4291 -2.2544 29 1 2.7138 3.8413 -1.5161 30 1 4.9710 4.2133 -2.9989 31 1 4.7453 5.1434 -1.4799 32 1 6.8459 4.0494 -1.0556 33 1 6.3387 2.5638 -1.9161 34 1 8.6077 -1.5101 2.5883 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963976.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:54 Heat of formation + Delta-G solvation = -164.014495 kcal Electronic energy + Delta-G solvation = -20734.596847 eV Core-core repulsion = 17373.644066 eV Total energy + Delta-G solvation = -3360.952782 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41196 -38.28779 -36.27003 -35.72258 -34.47818 -33.06789 -31.65413 -30.45062 -28.02243 -26.46494 -25.86751 -21.96460 -21.26538 -20.38593 -18.46600 -17.95525 -17.13249 -16.73998 -16.59255 -16.33696 -15.30416 -15.22024 -14.41042 -13.87647 -13.53438 -13.39869 -13.34440 -13.01890 -12.95894 -12.66954 -12.23173 -12.11278 -11.70707 -11.47303 -11.32091 -10.96248 -10.82902 -10.72752 -10.68230 -10.59932 -10.58665 -10.42820 -10.31402 -9.84921 -9.23964 -9.17378 -8.32143 -6.83712 -5.38262 1.90344 2.37874 2.83925 3.04944 3.15463 3.24682 3.92616 4.17179 4.54028 4.75424 4.83431 4.98209 5.05167 5.10361 5.17140 5.35290 5.40348 5.49944 5.52496 5.64133 5.80729 5.87532 6.00853 6.06954 6.08504 6.25557 6.30664 6.41228 6.52121 6.70910 7.17006 7.45259 7.89387 8.17694 8.66867 10.28233 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.007575 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.644295 B = 3695.643793 C = 4577.763936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.474 3.526 4 O -0.511 6.511 5 C -0.142 4.142 6 C 0.170 3.830 7 H 0.086 0.914 8 C -0.122 4.122 9 C -0.130 4.130 10 C 0.119 3.881 11 N -1.008 6.008 12 S 2.684 3.316 13 O -1.005 7.005 14 O -1.003 7.003 15 C -1.016 5.016 16 H 0.123 0.877 17 C 0.155 3.845 18 N -0.820 5.820 19 Si 0.798 3.202 20 H -0.245 1.245 21 H -0.254 1.254 22 H -0.220 1.220 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.125 0.875 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.201 3.605 -7.334 13.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.317 3.683 4 O -0.399 6.399 5 C -0.181 4.181 6 C 0.063 3.937 7 H 0.104 0.896 8 C -0.161 4.161 9 C -0.169 4.169 10 C -0.007 4.007 11 N -0.843 5.843 12 S 2.788 3.212 13 O -0.995 6.995 14 O -0.993 6.993 15 C -1.150 5.150 16 H 0.141 0.859 17 C -0.065 4.065 18 N -0.449 5.449 19 Si 0.618 3.382 20 H -0.169 1.169 21 H -0.178 1.178 22 H -0.143 1.143 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.117 0.883 26 H 0.132 0.868 27 H 0.143 0.857 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.123 4.303 -6.477 12.765 hybrid contribution 0.168 -0.597 0.405 0.740 sum -9.955 3.706 -6.072 12.236 Atomic orbital electron populations 1.23226 0.76840 1.03448 1.02359 1.86558 1.23059 1.33701 1.84155 1.23668 0.91916 0.81134 0.71562 1.90623 1.67299 1.36189 1.45771 1.22085 0.87428 1.00649 1.07892 1.20893 0.81025 0.92923 0.98898 0.89575 1.22712 0.98716 0.99731 0.94977 1.22747 0.94678 0.98980 1.00499 1.21885 0.96496 0.97205 0.85114 1.58746 1.14450 1.80708 1.30365 1.01211 0.72444 0.76935 0.70597 1.93411 1.65223 1.89483 1.51400 1.93457 1.48910 1.71316 1.85657 1.30521 1.47678 1.21513 1.15334 0.85861 1.24402 0.90907 0.94156 0.97064 1.69983 1.29388 1.11228 1.34306 0.87919 0.81266 0.84237 0.84825 1.16894 1.17762 1.14252 0.91957 0.92078 0.88325 0.86843 0.85688 0.91045 0.89847 0.90318 0.90827 0.90083 0.91713 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.44 16 2 O -0.36 -5.22 10.56 -39.25 -0.41 -5.63 16 3 C 0.47 7.58 7.68 36.01 0.28 7.86 16 4 O -0.51 -8.67 14.80 -18.75 -0.28 -8.95 16 5 C -0.14 -2.39 5.35 -27.88 -0.15 -2.54 16 6 C 0.17 2.92 2.46 -66.95 -0.16 2.76 16 7 H 0.09 1.56 7.82 -51.93 -0.41 1.16 16 8 C -0.12 -1.64 5.60 -24.90 -0.14 -1.78 16 9 C -0.13 -1.61 7.07 -24.70 -0.17 -1.79 16 10 C 0.12 1.89 7.13 -2.65 -0.02 1.87 16 11 N -1.01 -19.77 3.40 -104.54 -0.36 -20.12 16 12 S 2.68 67.18 3.93 -107.50 -0.42 66.76 16 13 O -1.00 -26.61 15.80 -57.17 -0.90 -27.52 16 14 O -1.00 -27.01 15.43 -57.17 -0.88 -27.90 16 15 C -1.02 -27.63 10.29 30.60 0.31 -27.32 16 16 H 0.12 3.33 8.06 -52.49 -0.42 2.91 16 17 C 0.15 4.37 5.47 -17.82 -0.10 4.27 16 18 N -0.82 -23.22 13.96 55.43 0.77 -22.45 16 19 Si 0.80 20.39 26.53 -169.99 -4.51 15.88 16 20 H -0.25 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.25 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.22 -5.77 5.61 56.52 0.32 -5.46 16 23 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 24 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 25 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.11 1.69 8.00 -51.93 -0.42 1.28 16 27 H 0.13 2.41 7.24 -51.93 -0.38 2.03 16 28 H 0.07 0.86 7.76 -51.92 -0.40 0.45 16 29 H 0.08 1.06 7.85 -51.93 -0.41 0.66 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.31 7.80 -51.93 -0.41 0.90 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 297.53 15.07 4.48 4.48 Total: -1.00 -32.87 297.53 -6.19 -39.05 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -4.59 Total: 1.62 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 0.91 Total: -15.23 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.42 Total: -42.57 kcal Atomic # 8 Polarization: -67.51 SS G_CDS: -2.48 Total: -69.99 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.51 Total: 15.88 kcal Atomic # 16 Polarization: 67.18 SS G_CDS: -0.42 Total: 66.76 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.87 -6.19 -39.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963976.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.963 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds