Wall clock time and date at job start Mon Mar 30 2020 02:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00062 * 2 1 4 4 O 1.20827 * 120.00187 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00027 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47277 * 174.25664 * 5 3 2 7 7 H 1.09003 * 109.99461 * 53.18836 * 6 5 3 8 8 C 1.54325 * 109.88421 * 292.10045 * 6 5 3 9 9 C 1.55156 * 102.94272 * 218.38825 * 8 6 5 10 10 C 1.54691 * 101.67502 * 35.33299 * 9 8 6 11 11 N 1.47019 * 109.88435 * 174.28568 * 6 5 3 12 12 S 1.65590 * 125.65196 * 298.32166 * 11 6 5 13 13 O 1.42104 * 106.40232 * 341.37545 * 12 11 6 14 14 O 1.42100 * 106.40659 * 208.44987 * 12 11 6 15 15 C 1.76204 * 107.21792 * 94.91284 * 12 11 6 16 16 H 1.08002 * 119.99609 * 0.02562 * 15 12 11 17 17 C 1.37873 * 120.00031 * 180.27658 * 15 12 11 18 18 N 1.31519 * 120.00014 * 179.72020 * 17 15 12 19 19 Si 1.86803 * 120.00127 * 359.72775 * 17 15 12 20 20 H 1.48490 * 109.47261 * 89.99986 * 19 17 15 21 21 H 1.48503 * 109.46952 * 210.00171 * 19 17 15 22 22 H 1.48504 * 109.46660 * 329.99450 * 19 17 15 23 23 H 1.09000 * 109.46925 * 299.99737 * 1 2 3 24 24 H 1.08995 * 109.47426 * 59.99823 * 1 2 3 25 25 H 1.09003 * 109.47077 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47254 * 54.25765 * 5 3 2 27 27 H 1.08999 * 109.47142 * 294.25609 * 5 3 2 28 28 H 1.09011 * 110.71719 * 336.74914 * 8 6 5 29 29 H 1.09001 * 110.72663 * 99.84156 * 8 6 5 30 30 H 1.09005 * 111.00424 * 153.57304 * 9 8 6 31 31 H 1.09001 * 111.00250 * 277.38526 * 9 8 6 32 32 H 1.09007 * 110.38797 * 204.36489 * 10 9 8 33 33 H 1.08997 * 110.23761 * 82.11983 * 10 9 8 34 34 H 0.97002 * 120.00066 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0005 2.7348 -0.1448 7 1 3.5137 3.3453 0.6158 8 6 3.6324 3.2555 -1.5502 9 6 4.8454 4.1504 -1.9179 10 6 6.0148 3.3760 -1.2655 11 7 5.4608 2.8379 -0.0097 12 16 6.3374 2.4248 1.3330 13 8 5.4185 2.3875 2.4164 14 8 7.4961 3.2474 1.3246 15 6 6.8996 0.7712 1.1004 16 1 6.6464 0.2368 0.1967 17 6 7.6585 0.1576 2.0744 18 7 8.0735 -1.0786 1.9032 19 14 8.0970 1.0821 3.6373 20 1 7.0462 0.8507 4.6606 21 1 9.4031 0.5957 4.1501 22 1 8.1906 2.5347 3.3434 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.9602 0.6945 -0.8350 27 1 3.9516 0.8721 0.9361 28 1 3.5352 2.4291 -2.2544 29 1 2.7138 3.8413 -1.5161 30 1 4.9710 4.2133 -2.9989 31 1 4.7453 5.1434 -1.4799 32 1 6.8459 4.0494 -1.0556 33 1 6.3387 2.5638 -1.9161 34 1 8.6077 -1.5101 2.5883 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192963976.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:54 Heat of formation + Delta-G solvation = -188.544600 kcal Electronic energy + Delta-G solvation = -20735.660552 eV Core-core repulsion = 17373.644066 eV Total energy + Delta-G solvation = -3362.016487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.63035 -39.55852 -37.78561 -37.44873 -36.54479 -35.20004 -32.93204 -31.77885 -29.03019 -28.56868 -27.03116 -23.32295 -22.40852 -21.73374 -20.38137 -19.54112 -18.78862 -18.36916 -17.83510 -17.53006 -17.17572 -16.61996 -16.11407 -15.51846 -15.16925 -15.02362 -14.78318 -14.50605 -14.29417 -13.99295 -13.51566 -13.48527 -13.26614 -13.12482 -12.83218 -12.77864 -12.68652 -12.60474 -12.01024 -11.88841 -11.79362 -11.75313 -11.56705 -11.54569 -11.34814 -11.20444 -9.88320 -8.97638 -7.52856 0.00715 1.02465 1.11268 1.12393 1.18838 1.69286 1.87054 2.39784 2.47772 3.30560 3.53704 3.58115 3.75044 3.93682 4.11191 4.23158 4.32512 4.34335 4.37329 4.42720 4.66634 4.71972 4.75979 4.91515 5.00447 5.06288 5.10786 5.23178 5.34202 5.38854 5.44295 5.66933 6.02857 6.52721 6.68717 8.19380 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.007575 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.644295 B = 3695.643793 C = 4577.763936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.368 6.368 3 C 0.481 3.519 4 O -0.522 6.522 5 C -0.145 4.145 6 C 0.160 3.840 7 H 0.071 0.929 8 C -0.113 4.113 9 C -0.116 4.116 10 C 0.102 3.898 11 N -1.009 6.009 12 S 2.701 3.299 13 O -1.026 7.026 14 O -1.026 7.026 15 C -1.030 5.030 16 H 0.114 0.886 17 C 0.114 3.886 18 N -0.847 5.847 19 Si 0.815 3.185 20 H -0.240 1.240 21 H -0.217 1.217 22 H -0.233 1.233 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.130 0.870 26 H 0.130 0.870 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.189 4.054 -8.652 14.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C 0.324 3.676 4 O -0.411 6.411 5 C -0.184 4.184 6 C 0.054 3.946 7 H 0.089 0.911 8 C -0.152 4.152 9 C -0.155 4.155 10 C -0.022 4.022 11 N -0.847 5.847 12 S 2.804 3.196 13 O -1.017 7.017 14 O -1.017 7.017 15 C -1.164 5.164 16 H 0.132 0.868 17 C -0.104 4.104 18 N -0.477 5.477 19 Si 0.632 3.368 20 H -0.163 1.163 21 H -0.139 1.139 22 H -0.156 1.156 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.148 0.852 26 H 0.148 0.852 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.135 0.865 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.095 4.717 -7.783 14.351 hybrid contribution 0.371 -0.767 0.740 1.128 sum -10.725 3.950 -7.044 13.425 Atomic orbital electron populations 1.23598 0.74413 1.05752 1.02868 1.86531 1.25438 1.32747 1.83691 1.23345 0.91420 0.81448 0.71377 1.90610 1.67451 1.36613 1.46466 1.22040 0.88626 1.00710 1.07038 1.21145 0.79167 0.93075 1.01249 0.91136 1.22717 0.99432 1.00579 0.92457 1.22762 0.91980 0.98249 1.02471 1.22292 0.97987 0.98088 0.83856 1.58350 1.15558 1.80383 1.30416 1.00405 0.72091 0.75784 0.71337 1.93372 1.65441 1.89461 1.53380 1.93418 1.50472 1.71214 1.86558 1.30933 1.47430 1.23060 1.14935 0.86761 1.25042 0.91238 0.94919 0.99154 1.69995 1.30230 1.11911 1.35560 0.87641 0.83208 0.82883 0.83058 1.16315 1.13896 1.15594 0.92113 0.90942 0.85229 0.85169 0.88707 0.89171 0.88769 0.86494 0.90303 0.90684 0.90403 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.37 -10.23 10.56 -51.39 -0.54 -10.78 16 3 C 0.48 14.92 7.68 71.24 0.55 15.47 16 4 O -0.52 -17.06 14.80 21.96 0.33 -16.74 16 5 C -0.15 -4.86 5.35 29.85 0.16 -4.70 16 6 C 0.16 5.37 2.46 45.34 0.11 5.48 16 7 H 0.07 2.56 7.82 -2.39 -0.02 2.54 16 8 C -0.11 -2.69 5.60 31.78 0.18 -2.51 16 9 C -0.12 -2.48 7.07 31.91 0.23 -2.25 16 10 C 0.10 3.08 7.13 86.78 0.62 3.70 16 11 N -1.01 -39.15 3.40 -484.67 -1.65 -40.79 16 12 S 2.70 136.71 3.93 -56.49 -0.22 136.48 16 13 O -1.03 -55.35 15.80 -128.00 -2.02 -57.38 16 14 O -1.03 -55.76 15.43 -128.00 -1.97 -57.73 16 15 C -1.03 -57.00 10.29 67.73 0.70 -56.30 16 16 H 0.11 6.33 8.06 -2.91 -0.02 6.31 16 17 C 0.11 6.48 5.47 84.65 0.46 6.95 16 18 N -0.85 -48.19 13.96 21.45 0.30 -47.89 16 19 Si 0.81 41.02 26.53 68.60 1.82 42.84 16 20 H -0.24 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.22 -9.58 7.11 99.48 0.71 -8.87 16 22 H -0.23 -12.21 5.61 99.48 0.56 -11.65 16 23 H 0.06 1.17 8.13 -2.39 -0.02 1.16 16 24 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 25 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.13 3.79 8.00 -2.39 -0.02 3.77 16 27 H 0.09 3.77 7.24 -2.39 -0.02 3.76 16 28 H 0.09 1.83 7.76 -2.38 -0.02 1.81 16 29 H 0.09 2.10 7.85 -2.39 -0.02 2.08 16 30 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 2.34 7.80 -2.38 -0.02 2.32 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.29 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -71.08 297.53 1.18 -69.89 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.95 Total: 14.55 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 4.20 Total: -32.47 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -1.35 Total: -88.68 kcal Atomic # 8 Polarization: -138.41 SS G_CDS: -4.22 Total: -142.62 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.82 Total: 42.84 kcal Atomic # 16 Polarization: 136.71 SS G_CDS: -0.22 Total: 136.48 kcal Total: -71.08 1.18 -69.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963976.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.651 kcal (2) G-P(sol) polarization free energy of solvation -71.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds