Wall clock time and date at job start Mon Mar 30 2020 02:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34221 * 117.00286 * 2 1 4 4 O 1.20825 * 120.00275 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99830 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46861 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.46906 * 174.85451 * 6 5 3 8 8 C 1.46501 * 120.00390 * 83.04277 * 7 6 5 9 9 C 1.52995 * 117.49963 * 3.92391 * 8 7 6 10 10 C 1.52994 * 117.49662 * 295.30191 * 8 7 6 11 11 S 1.65604 * 119.99843 * 263.04024 * 7 6 5 12 12 O 1.42097 * 106.40502 * 203.54323 * 11 7 6 13 13 O 1.42100 * 106.39938 * 336.46334 * 11 7 6 14 14 C 1.76199 * 107.21655 * 89.99888 * 11 7 6 15 15 H 1.07996 * 120.00296 * 0.02562 * 14 11 7 16 16 C 1.37881 * 120.00043 * 179.97438 * 14 11 7 17 17 N 1.31513 * 119.99601 * 0.02562 * 16 14 11 18 18 Si 1.86795 * 120.00039 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47089 * 90.00735 * 18 16 14 20 20 H 1.48505 * 109.47239 * 209.99945 * 18 16 14 21 21 H 1.48491 * 109.47493 * 330.00268 * 18 16 14 22 22 H 1.08999 * 109.47525 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47163 * 300.00421 * 1 2 3 24 24 H 1.09000 * 109.46806 * 59.99929 * 1 2 3 25 25 H 1.08998 * 109.47049 * 60.00317 * 5 3 2 26 26 H 1.08995 * 109.47223 * 299.99776 * 5 3 2 27 27 H 1.08997 * 109.47407 * 54.84774 * 6 5 3 28 28 H 1.09002 * 109.46532 * 294.84664 * 6 5 3 29 29 H 1.09001 * 115.54891 * 149.63275 * 8 7 6 30 30 H 1.09004 * 117.49836 * 0.02562 * 9 8 7 31 31 H 1.09000 * 117.50170 * 145.02116 * 9 8 7 32 32 H 1.09005 * 117.50192 * 214.97656 * 10 8 7 33 33 H 1.08998 * 117.49951 * 359.97438 * 10 8 7 34 34 H 0.97008 * 119.99675 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5665 1.2746 0.0006 6 6 4.0003 2.7419 0.0011 7 7 5.4579 2.8200 0.1255 8 6 6.3034 2.6739 -1.0619 9 6 5.6030 2.5339 -2.4149 10 6 6.2872 1.3224 -1.7787 11 16 6.1499 3.0735 1.6086 12 8 7.4299 3.6393 1.3627 13 8 5.1613 3.7061 2.4097 14 6 6.4353 1.4907 2.3283 15 1 6.1609 0.5954 1.7903 16 6 7.0099 1.3951 3.5780 17 7 7.3444 2.4854 4.2330 18 14 7.3118 -0.2828 4.3413 19 1 8.6623 -0.7658 3.9567 20 1 7.2269 -0.1765 5.8201 21 1 6.2864 -1.2400 3.8542 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 3.9565 0.7804 -0.8892 26 1 3.9558 0.7807 0.8908 27 1 3.5357 3.2579 0.8413 28 1 3.6896 3.2129 -0.9315 29 1 7.2468 3.2193 -1.0372 30 1 4.5132 2.5509 -2.4217 31 1 6.0856 2.9873 -3.2808 32 1 7.2199 0.9786 -2.2260 33 1 5.6478 0.5417 -1.3665 34 1 7.7483 2.4182 5.1124 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192967342.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:01 Heat of formation + Delta-G solvation = -147.072497 kcal Electronic energy + Delta-G solvation = -20514.157066 eV Core-core repulsion = 17153.938945 eV Total energy + Delta-G solvation = -3360.218121 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.37530 -38.02881 -36.43150 -35.37097 -34.01146 -33.42866 -33.09064 -30.38511 -27.61713 -26.17066 -24.10649 -22.17573 -21.06003 -20.38494 -18.65165 -18.10564 -17.28936 -16.69245 -16.31820 -16.25509 -15.52869 -15.02070 -14.43566 -14.07305 -13.86371 -13.55481 -13.43308 -12.97602 -12.54334 -12.16600 -12.03090 -11.76687 -11.59573 -11.34533 -11.23458 -10.83885 -10.80138 -10.77291 -10.61363 -10.56870 -10.35751 -10.31498 -10.06529 -9.90484 -9.26924 -8.93120 -8.17317 -6.72061 -5.34897 2.12956 2.32469 2.80729 3.05391 3.12424 3.18079 4.00151 4.11476 4.42398 4.61736 4.88828 5.04718 5.06500 5.11954 5.17191 5.19010 5.27265 5.34459 5.47970 5.61990 5.83378 5.86929 5.90266 6.07583 6.16725 6.32305 6.36140 6.41920 6.47561 6.78799 7.29923 7.48532 7.84147 7.93683 8.86347 10.21694 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.007536 C = 0.006139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.240111 B = 3714.851224 C = 4559.767525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.468 3.532 4 O -0.508 6.508 5 C -0.146 4.146 6 C 0.131 3.869 7 N -0.982 5.982 8 C 0.096 3.904 9 C -0.192 4.192 10 C -0.202 4.202 11 S 2.713 3.287 12 O -1.000 7.000 13 O -0.999 6.999 14 C -1.018 5.018 15 H 0.104 0.896 16 C 0.133 3.867 17 N -0.845 5.845 18 Si 0.919 3.081 19 H -0.267 1.267 20 H -0.275 1.275 21 H -0.262 1.262 22 H 0.098 0.902 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.109 0.891 26 H 0.121 0.879 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.139 0.861 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.454 -6.154 -10.442 14.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.311 3.689 4 O -0.396 6.396 5 C -0.185 4.185 6 C 0.004 3.996 7 N -0.812 5.812 8 C -0.012 4.012 9 C -0.231 4.231 10 C -0.241 4.241 11 S 2.814 3.186 12 O -0.990 6.990 13 O -0.989 6.989 14 C -1.151 5.151 15 H 0.122 0.878 16 C -0.085 4.085 17 N -0.475 5.475 18 Si 0.743 3.257 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.186 1.186 22 H 0.117 0.883 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.127 0.873 26 H 0.139 0.861 27 H 0.123 0.877 28 H 0.098 0.902 29 H 0.156 0.844 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.431 -4.844 -9.912 13.302 hybrid contribution -0.101 -1.627 0.400 1.678 sum -7.532 -6.471 -9.512 13.751 Atomic orbital electron populations 1.23231 0.76773 1.03408 1.02502 1.86531 1.23159 1.33843 1.84284 1.23838 0.92113 0.81162 0.71830 1.90662 1.67310 1.36223 1.45356 1.22244 0.86923 1.02211 1.07111 1.20979 0.80667 0.92888 1.05039 1.57725 1.11536 1.88312 1.23618 1.21415 0.96242 0.99540 0.83954 1.23249 1.00287 1.03165 0.96380 1.23502 1.02929 0.92730 1.04934 1.00663 0.72123 0.76268 0.69524 1.93346 1.41524 1.79842 1.84317 1.93369 1.62066 1.77539 1.65964 1.30579 1.55380 1.15995 1.13187 0.87826 1.24746 0.89768 0.99068 0.94883 1.69896 1.34039 1.29162 1.14370 0.86180 0.79610 0.81671 0.78227 1.19150 1.19998 1.18580 0.88344 0.91836 0.92078 0.87289 0.86097 0.87676 0.90159 0.84361 0.88546 0.88397 0.88365 0.88359 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.92 10.56 -39.23 -0.41 -5.34 16 3 C 0.47 7.22 7.96 36.01 0.29 7.51 16 4 O -0.51 -8.92 15.66 -18.75 -0.29 -9.22 16 5 C -0.15 -2.22 5.73 -27.88 -0.16 -2.38 16 6 C 0.13 2.30 4.43 -4.04 -0.02 2.28 16 7 N -0.98 -19.45 3.13 -107.31 -0.34 -19.79 16 8 C 0.10 1.61 6.34 -67.94 -0.43 1.18 16 9 C -0.19 -2.42 9.63 -26.74 -0.26 -2.68 16 10 C -0.20 -2.73 9.89 -26.74 -0.26 -2.99 16 11 S 2.71 71.00 4.98 -107.50 -0.54 70.47 16 12 O -1.00 -28.70 16.84 -57.17 -0.96 -29.67 16 13 O -1.00 -28.92 16.56 -57.17 -0.95 -29.87 16 14 C -1.02 -27.12 9.75 30.60 0.30 -26.82 16 15 H 0.10 2.48 7.77 -52.49 -0.41 2.07 16 16 C 0.13 3.65 5.46 -17.82 -0.10 3.55 16 17 N -0.85 -24.58 13.19 55.43 0.73 -23.84 16 18 Si 0.92 20.19 29.54 -169.99 -5.02 15.17 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 22 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 24 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 25 H 0.11 1.38 5.63 -51.93 -0.29 1.09 16 26 H 0.12 1.97 8.10 -51.93 -0.42 1.54 16 27 H 0.11 2.09 6.69 -51.93 -0.35 1.75 16 28 H 0.08 1.22 6.36 -51.93 -0.33 0.89 16 29 H 0.14 2.40 7.45 -51.93 -0.39 2.01 16 30 H 0.10 1.16 6.24 -51.93 -0.32 0.84 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.10 1.29 5.93 -51.93 -0.31 0.98 16 34 H 0.29 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 304.71 15.07 4.59 4.59 Total: -1.00 -34.91 304.71 -6.83 -41.74 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -4.07 Total: 4.69 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 0.42 Total: -18.93 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.40 Total: -43.63 kcal Atomic # 8 Polarization: -71.47 SS G_CDS: -2.62 Total: -74.09 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 71.00 SS G_CDS: -0.54 Total: 70.47 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.91 -6.83 -41.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192967342.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.333 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds