Wall clock time and date at job start Mon Mar 30 2020 02:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34221 * 117.00286 * 2 1 4 4 O 1.20825 * 120.00275 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99830 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46861 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.46906 * 174.85451 * 6 5 3 8 8 C 1.46501 * 120.00390 * 83.04277 * 7 6 5 9 9 C 1.52995 * 117.49963 * 3.92391 * 8 7 6 10 10 C 1.52994 * 117.49662 * 295.30191 * 8 7 6 11 11 S 1.65604 * 119.99843 * 263.04024 * 7 6 5 12 12 O 1.42097 * 106.40502 * 203.54323 * 11 7 6 13 13 O 1.42100 * 106.39938 * 336.46334 * 11 7 6 14 14 C 1.76199 * 107.21655 * 89.99888 * 11 7 6 15 15 H 1.07996 * 120.00296 * 0.02562 * 14 11 7 16 16 C 1.37881 * 120.00043 * 179.97438 * 14 11 7 17 17 N 1.31513 * 119.99601 * 0.02562 * 16 14 11 18 18 Si 1.86795 * 120.00039 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47089 * 90.00735 * 18 16 14 20 20 H 1.48505 * 109.47239 * 209.99945 * 18 16 14 21 21 H 1.48491 * 109.47493 * 330.00268 * 18 16 14 22 22 H 1.08999 * 109.47525 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47163 * 300.00421 * 1 2 3 24 24 H 1.09000 * 109.46806 * 59.99929 * 1 2 3 25 25 H 1.08998 * 109.47049 * 60.00317 * 5 3 2 26 26 H 1.08995 * 109.47223 * 299.99776 * 5 3 2 27 27 H 1.08997 * 109.47407 * 54.84774 * 6 5 3 28 28 H 1.09002 * 109.46532 * 294.84664 * 6 5 3 29 29 H 1.09001 * 115.54891 * 149.63275 * 8 7 6 30 30 H 1.09004 * 117.49836 * 0.02562 * 9 8 7 31 31 H 1.09000 * 117.50170 * 145.02116 * 9 8 7 32 32 H 1.09005 * 117.50192 * 214.97656 * 10 8 7 33 33 H 1.08998 * 117.49951 * 359.97438 * 10 8 7 34 34 H 0.97008 * 119.99675 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5665 1.2746 0.0006 6 6 4.0003 2.7419 0.0011 7 7 5.4579 2.8200 0.1255 8 6 6.3034 2.6739 -1.0619 9 6 5.6030 2.5339 -2.4149 10 6 6.2872 1.3224 -1.7787 11 16 6.1499 3.0735 1.6086 12 8 7.4299 3.6393 1.3627 13 8 5.1613 3.7061 2.4097 14 6 6.4353 1.4907 2.3283 15 1 6.1609 0.5954 1.7903 16 6 7.0099 1.3951 3.5780 17 7 7.3444 2.4854 4.2330 18 14 7.3118 -0.2828 4.3413 19 1 8.6623 -0.7658 3.9567 20 1 7.2269 -0.1765 5.8201 21 1 6.2864 -1.2400 3.8542 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 3.9565 0.7804 -0.8892 26 1 3.9558 0.7807 0.8908 27 1 3.5357 3.2579 0.8413 28 1 3.6896 3.2129 -0.9315 29 1 7.2468 3.2193 -1.0372 30 1 4.5132 2.5509 -2.4217 31 1 6.0856 2.9873 -3.2808 32 1 7.2199 0.9786 -2.2260 33 1 5.6478 0.5417 -1.3665 34 1 7.7483 2.4182 5.1124 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192967342.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:01 Heat of formation + Delta-G solvation = -173.389705 kcal Electronic energy + Delta-G solvation = -20515.298266 eV Core-core repulsion = 17153.938945 eV Total energy + Delta-G solvation = -3361.359321 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55021 -39.29208 -37.65058 -37.42730 -36.16928 -35.19542 -34.71184 -31.72694 -28.55985 -28.26086 -25.37293 -23.24394 -22.39253 -21.68277 -20.48817 -19.68827 -18.52511 -18.48540 -17.69044 -17.42876 -17.14321 -16.77689 -15.99598 -15.69333 -15.44297 -14.93370 -14.57610 -14.35642 -13.96402 -13.76416 -13.39152 -13.21245 -13.00460 -12.86315 -12.78347 -12.56868 -12.51056 -12.35714 -12.29550 -12.03966 -11.81510 -11.64087 -11.55365 -11.24131 -11.18204 -10.93362 -9.63746 -8.72995 -7.47175 0.22727 1.12597 1.35296 1.36023 1.51913 1.71805 2.21361 2.59287 2.70911 3.03081 3.66074 3.78466 3.80512 3.88681 4.05183 4.12719 4.23580 4.31621 4.34304 4.37164 4.48609 4.52860 4.72252 4.81308 4.85693 4.97216 5.19190 5.26123 5.34301 5.35618 5.41493 5.91668 5.93880 6.68324 6.79323 8.22110 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.007536 C = 0.006139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.240111 B = 3714.851224 C = 4559.767525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.535 6.535 5 C -0.141 4.141 6 C 0.128 3.872 7 N -0.974 5.974 8 C 0.044 3.956 9 C -0.159 4.159 10 C -0.188 4.188 11 S 2.713 3.287 12 O -1.039 7.039 13 O -1.042 7.042 14 C -1.031 5.031 15 H 0.127 0.873 16 C 0.070 3.930 17 N -0.897 5.897 18 Si 0.988 3.012 19 H -0.254 1.254 20 H -0.267 1.267 21 H -0.242 1.242 22 H 0.134 0.866 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.142 0.858 26 H 0.110 0.890 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.183 -9.035 -12.277 17.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.180 4.180 6 C 0.002 3.998 7 N -0.808 5.808 8 C -0.062 4.062 9 C -0.197 4.197 10 C -0.227 4.227 11 S 2.817 3.183 12 O -1.029 7.029 13 O -1.032 7.032 14 C -1.165 5.165 15 H 0.145 0.855 16 C -0.143 4.143 17 N -0.529 5.529 18 Si 0.806 3.194 19 H -0.178 1.178 20 H -0.192 1.192 21 H -0.165 1.165 22 H 0.152 0.848 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.160 0.840 26 H 0.128 0.872 27 H 0.091 0.909 28 H 0.125 0.875 29 H 0.139 0.861 30 H 0.125 0.875 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.167 -7.725 -11.765 16.272 hybrid contribution 0.053 -0.705 0.863 1.115 sum -8.114 -8.430 -10.903 15.993 Atomic orbital electron populations 1.23586 0.74687 1.05809 1.02615 1.86507 1.25159 1.32506 1.83682 1.23751 0.92054 0.81344 0.71191 1.90657 1.67871 1.37213 1.46783 1.22138 0.87264 1.00412 1.08158 1.21063 0.78994 0.94758 1.04986 1.57031 1.12544 1.88636 1.22606 1.21640 0.96527 1.03263 0.84771 1.23395 1.00871 1.01336 0.94127 1.23634 1.04084 0.91785 1.03216 1.00187 0.71206 0.76396 0.70537 1.93282 1.43483 1.80779 1.85340 1.93305 1.62839 1.78658 1.68385 1.30918 1.55054 1.16789 1.13722 0.85501 1.26038 0.89085 1.03645 0.95517 1.70008 1.35568 1.32029 1.15305 0.85153 0.80471 0.76163 0.77577 1.17775 1.19152 1.16520 0.84835 0.92450 0.91342 0.84047 0.87160 0.90904 0.87492 0.86119 0.87453 0.85821 0.86546 0.87605 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.36 -9.01 10.56 -51.33 -0.54 -9.56 16 3 C 0.47 13.87 7.96 71.24 0.57 14.44 16 4 O -0.54 -18.42 15.66 21.97 0.34 -18.07 16 5 C -0.14 -4.06 5.73 29.85 0.17 -3.89 16 6 C 0.13 4.45 4.43 86.38 0.38 4.83 16 7 N -0.97 -38.76 3.13 -493.42 -1.54 -40.31 16 8 C 0.04 1.44 6.34 44.99 0.29 1.73 16 9 C -0.16 -3.44 9.63 30.59 0.29 -3.15 16 10 C -0.19 -4.47 9.89 30.59 0.30 -4.17 16 11 S 2.71 147.16 4.98 -56.49 -0.28 146.88 16 12 O -1.04 -62.39 16.84 -128.00 -2.16 -64.55 16 13 O -1.04 -63.44 16.56 -128.00 -2.12 -65.56 16 14 C -1.03 -55.35 9.75 67.74 0.66 -54.69 16 15 H 0.13 5.95 7.77 -2.91 -0.02 5.93 16 16 C 0.07 3.83 5.46 84.66 0.46 4.30 16 17 N -0.90 -53.72 13.19 21.45 0.28 -53.44 16 18 Si 0.99 40.48 29.54 68.60 2.03 42.50 16 19 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 20 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 21 H -0.24 -9.07 7.11 99.48 0.71 -8.37 16 22 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 24 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 25 H 0.14 3.09 5.63 -2.39 -0.01 3.08 16 26 H 0.11 3.47 8.10 -2.39 -0.02 3.45 16 27 H 0.07 3.01 6.69 -2.39 -0.02 3.00 16 28 H 0.11 3.10 6.36 -2.39 -0.02 3.08 16 29 H 0.12 4.27 7.45 -2.39 -0.02 4.26 16 30 H 0.11 2.13 6.24 -2.38 -0.01 2.11 16 31 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.12 2.36 8.14 -2.38 -0.02 2.34 16 33 H 0.11 2.36 5.93 -2.39 -0.01 2.35 16 34 H 0.30 16.05 8.31 -92.70 -0.77 15.28 16 Total: -1.00 -79.18 304.71 1.45 -77.73 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 1.12 Total: 23.31 kcal Atomic # 6 Polarization: -43.27 SS G_CDS: 4.32 Total: -38.95 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -1.26 Total: -93.75 kcal Atomic # 8 Polarization: -153.26 SS G_CDS: -4.47 Total: -157.74 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.50 kcal Atomic # 16 Polarization: 147.16 SS G_CDS: -0.28 Total: 146.88 kcal Total: -79.18 1.45 -77.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192967342.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.657 kcal (2) G-P(sol) polarization free energy of solvation -79.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds