Wall clock time and date at job start Mon Mar 30 2020 02:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34222 * 117.00074 * 2 1 4 4 O 1.20822 * 120.00187 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00048 * 179.97438 * 3 2 1 6 6 H 1.09004 * 110.53855 * 302.60786 * 5 3 2 7 7 C 1.54891 * 110.48877 * 65.22131 * 5 3 2 8 8 C 1.54888 * 102.75120 * 156.61975 * 7 5 3 9 9 C 1.54261 * 104.19672 * 322.06034 * 8 7 5 10 10 H 1.08997 * 110.07267 * 264.30456 * 9 8 7 11 11 N 1.46501 * 110.03258 * 142.89234 * 9 8 7 12 12 S 1.65597 * 119.99878 * 97.83534 * 11 9 8 13 13 O 1.42097 * 106.40287 * 178.53642 * 12 11 9 14 14 O 1.42102 * 106.40105 * 311.46003 * 12 11 9 15 15 C 1.76203 * 107.21975 * 64.99921 * 12 11 9 16 16 H 1.07995 * 120.00135 * 359.97438 * 15 12 11 17 17 C 1.37881 * 119.99719 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00310 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99785 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47624 * 89.99487 * 19 17 15 21 21 H 1.48500 * 109.47170 * 209.99614 * 19 17 15 22 22 H 1.48504 * 109.47140 * 329.99637 * 19 17 15 23 23 C 1.53876 * 106.59990 * 23.60631 * 9 8 7 24 24 H 1.09000 * 109.46545 * 60.00765 * 1 2 3 25 25 H 1.09000 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47192 * 300.00304 * 1 2 3 27 27 H 1.09005 * 110.75269 * 38.30480 * 7 5 3 28 28 H 1.08999 * 110.75712 * 274.93913 * 7 5 3 29 29 H 1.09000 * 110.48622 * 203.37816 * 8 7 5 30 30 H 1.09001 * 110.59737 * 80.79460 * 8 7 5 31 31 H 0.96996 * 119.99643 * 277.82648 * 11 9 8 32 32 H 0.96999 * 119.99875 * 180.02562 * 18 17 15 33 33 H 1.08995 * 110.03160 * 119.28453 * 23 9 8 34 34 H 1.08998 * 110.03319 * 240.71542 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9767 0.7457 0.8607 7 6 4.1401 0.6956 -1.3164 8 6 5.5247 1.3825 -1.4173 9 6 5.2751 2.8146 -0.9012 10 1 5.0929 3.4877 -1.7388 11 7 6.4299 3.2776 -0.1276 12 16 7.5740 4.2380 -0.8424 13 8 8.5301 4.5401 0.1643 14 8 7.9118 3.6119 -2.0725 15 6 6.7910 5.7609 -1.2579 16 1 5.7457 5.9101 -1.0313 17 6 7.5127 6.7617 -1.8733 18 7 8.7855 6.5798 -2.1497 19 14 6.6829 8.3764 -2.3131 20 1 6.8103 9.3241 -1.1770 21 1 7.3332 8.9555 -3.5160 22 1 5.2455 8.1332 -2.5961 23 6 4.0299 2.7462 0.0004 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.5112 0.9676 -2.1642 28 1 4.2499 -0.3866 -1.2470 29 1 5.8653 1.4040 -2.4525 30 1 6.2530 0.8715 -0.7876 31 1 6.5242 3.0217 0.8032 32 1 9.2933 7.2840 -2.5823 33 1 4.2848 3.0574 1.0133 34 1 3.2433 3.3854 -0.4003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192993751.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:34 Heat of formation + Delta-G solvation = -190.811462 kcal Electronic energy + Delta-G solvation = -19976.528322 eV Core-core repulsion = 16614.413537 eV Total energy + Delta-G solvation = -3362.114785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.74149 -38.15628 -36.47318 -35.14324 -33.91336 -33.18810 -32.85336 -29.20738 -28.14390 -26.70592 -26.10376 -22.56573 -20.59062 -19.76978 -19.06896 -17.95485 -17.35318 -16.79972 -16.54956 -16.11292 -15.72523 -14.94402 -14.24649 -14.21851 -13.93795 -13.65518 -13.26167 -13.11831 -12.39662 -12.27941 -12.12687 -11.85802 -11.55651 -11.22866 -11.19293 -11.17374 -10.97717 -10.78363 -10.59663 -10.53852 -10.36778 -10.26091 -10.17359 -10.13881 -9.22661 -9.00147 -8.49887 -6.68193 -5.29867 2.10506 2.36989 2.58668 3.08784 3.15658 3.22518 4.08218 4.38674 4.53500 4.66343 4.73303 4.80346 4.88988 4.96349 5.17281 5.30801 5.47952 5.48918 5.53605 5.61905 5.69884 5.81651 5.90796 6.10286 6.20398 6.28720 6.32258 6.50219 6.60643 6.93808 7.34650 7.64047 7.92741 8.00888 8.91498 10.25905 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.004822 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.417256 B = 5805.241324 C = 6465.021413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.468 3.532 4 O -0.505 6.505 5 C -0.088 4.088 6 H 0.114 0.886 7 C -0.109 4.109 8 C -0.139 4.139 9 C 0.158 3.842 10 H 0.097 0.903 11 N -1.130 6.130 12 S 2.714 3.286 13 O -1.009 7.009 14 O -1.005 7.005 15 C -1.022 5.022 16 H 0.102 0.898 17 C 0.133 3.867 18 N -0.846 5.846 19 Si 0.919 3.081 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.262 1.262 23 C -0.123 4.123 24 H 0.062 0.938 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.401 0.599 32 H 0.290 0.710 33 H 0.082 0.918 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.405 -11.844 3.231 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.311 3.689 4 O -0.392 6.392 5 C -0.107 4.107 6 H 0.132 0.868 7 C -0.147 4.147 8 C -0.178 4.178 9 C 0.050 3.950 10 H 0.115 0.885 11 N -0.883 5.883 12 S 2.813 3.187 13 O -0.999 6.999 14 O -0.995 6.995 15 C -1.156 5.156 16 H 0.121 0.879 17 C -0.084 4.084 18 N -0.475 5.475 19 Si 0.743 3.257 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.186 1.186 23 C -0.162 4.162 24 H 0.081 0.919 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.232 0.768 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.565 -11.693 2.812 17.393 hybrid contribution -1.172 1.226 0.231 1.712 sum -13.737 -10.467 3.043 17.536 Atomic orbital electron populations 1.23250 0.76691 1.03509 1.02531 1.86525 1.23166 1.33713 1.84181 1.23855 0.92167 0.81132 0.71793 1.90663 1.67097 1.36349 1.45075 1.21981 0.86259 1.00291 1.02212 0.86849 1.22481 0.97068 1.00445 0.94745 1.22941 0.95848 0.95743 1.03301 1.21170 0.84743 0.95544 0.93576 0.88499 1.56177 1.39939 1.69599 1.22605 1.00441 0.71689 0.74100 0.72434 1.93372 1.59892 1.85547 1.61093 1.93363 1.82526 1.77988 1.45581 1.30592 1.09150 1.21686 1.54131 0.87947 1.24732 0.93845 0.99689 0.90175 1.69895 1.07448 1.35561 1.34622 0.86187 0.80228 0.80743 0.78555 1.19219 1.20001 1.18644 1.22575 0.98389 0.93258 1.01937 0.91920 0.88238 0.92003 0.90819 0.90194 0.89796 0.90427 0.76778 0.89925 0.89922 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.85 10.56 -39.24 -0.41 -4.27 16 3 C 0.47 5.81 7.25 36.01 0.26 6.07 16 4 O -0.50 -7.67 15.17 -18.75 -0.28 -7.96 16 5 C -0.09 -1.00 3.36 -90.11 -0.30 -1.30 16 6 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 7 C -0.11 -1.20 6.32 -24.74 -0.16 -1.35 16 8 C -0.14 -1.94 6.53 -25.08 -0.16 -2.11 16 9 C 0.16 2.58 3.44 -66.81 -0.23 2.35 16 10 H 0.10 1.72 7.91 -51.93 -0.41 1.31 16 11 N -1.13 -21.32 5.40 -3.94 -0.02 -21.34 16 12 S 2.71 70.37 4.93 -107.50 -0.53 69.84 16 13 O -1.01 -29.27 18.02 -57.17 -1.03 -30.30 16 14 O -1.00 -28.48 17.78 -57.17 -1.02 -29.50 16 15 C -1.02 -27.92 9.62 30.60 0.29 -27.62 16 16 H 0.10 2.57 7.81 -52.49 -0.41 2.15 16 17 C 0.13 3.72 5.46 -17.82 -0.10 3.63 16 18 N -0.85 -24.86 13.19 55.43 0.73 -24.13 16 19 Si 0.92 20.68 29.54 -169.99 -5.02 15.66 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 23 C -0.12 -1.67 5.95 -25.61 -0.15 -1.83 16 24 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 27 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.04 8.05 -51.93 -0.42 0.62 16 31 H 0.40 6.43 8.67 -34.47 -0.30 6.13 16 32 H 0.29 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.08 1.06 7.75 -51.93 -0.40 0.66 16 34 H 0.09 1.34 6.85 -51.93 -0.36 0.98 16 LS Contribution 306.65 15.07 4.62 4.62 Total: -1.00 -36.09 306.65 -6.83 -42.92 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.38 Total: 5.28 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 0.52 Total: -20.82 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.71 Total: -45.47 kcal Atomic # 8 Polarization: -69.28 SS G_CDS: -2.75 Total: -72.02 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 70.37 SS G_CDS: -0.53 Total: 69.84 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -36.09 -6.83 -42.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993751.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.895 kcal (2) G-P(sol) polarization free energy of solvation -36.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds