Wall clock time and date at job start Mon Mar 30 2020 02:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34222 * 117.00074 * 2 1 4 4 O 1.20822 * 120.00187 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00048 * 179.97438 * 3 2 1 6 6 H 1.09004 * 110.53855 * 302.60786 * 5 3 2 7 7 C 1.54891 * 110.48877 * 65.22131 * 5 3 2 8 8 C 1.54888 * 102.75120 * 156.61975 * 7 5 3 9 9 C 1.54261 * 104.19672 * 322.06034 * 8 7 5 10 10 H 1.08997 * 110.07267 * 264.30456 * 9 8 7 11 11 N 1.46501 * 110.03258 * 142.89234 * 9 8 7 12 12 S 1.65597 * 119.99878 * 97.83534 * 11 9 8 13 13 O 1.42097 * 106.40287 * 178.53642 * 12 11 9 14 14 O 1.42102 * 106.40105 * 311.46003 * 12 11 9 15 15 C 1.76203 * 107.21975 * 64.99921 * 12 11 9 16 16 H 1.07995 * 120.00135 * 359.97438 * 15 12 11 17 17 C 1.37881 * 119.99719 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00310 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99785 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47624 * 89.99487 * 19 17 15 21 21 H 1.48500 * 109.47170 * 209.99614 * 19 17 15 22 22 H 1.48504 * 109.47140 * 329.99637 * 19 17 15 23 23 C 1.53876 * 106.59990 * 23.60631 * 9 8 7 24 24 H 1.09000 * 109.46545 * 60.00765 * 1 2 3 25 25 H 1.09000 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47192 * 300.00304 * 1 2 3 27 27 H 1.09005 * 110.75269 * 38.30480 * 7 5 3 28 28 H 1.08999 * 110.75712 * 274.93913 * 7 5 3 29 29 H 1.09000 * 110.48622 * 203.37816 * 8 7 5 30 30 H 1.09001 * 110.59737 * 80.79460 * 8 7 5 31 31 H 0.96996 * 119.99643 * 277.82648 * 11 9 8 32 32 H 0.96999 * 119.99875 * 180.02562 * 18 17 15 33 33 H 1.08995 * 110.03160 * 119.28453 * 23 9 8 34 34 H 1.08998 * 110.03319 * 240.71542 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9767 0.7457 0.8607 7 6 4.1401 0.6956 -1.3164 8 6 5.5247 1.3825 -1.4173 9 6 5.2751 2.8146 -0.9012 10 1 5.0929 3.4877 -1.7388 11 7 6.4299 3.2776 -0.1276 12 16 7.5740 4.2380 -0.8424 13 8 8.5301 4.5401 0.1643 14 8 7.9118 3.6119 -2.0725 15 6 6.7910 5.7609 -1.2579 16 1 5.7457 5.9101 -1.0313 17 6 7.5127 6.7617 -1.8733 18 7 8.7855 6.5798 -2.1497 19 14 6.6829 8.3764 -2.3131 20 1 6.8103 9.3241 -1.1770 21 1 7.3332 8.9555 -3.5160 22 1 5.2455 8.1332 -2.5961 23 6 4.0299 2.7462 0.0004 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.5112 0.9676 -2.1642 28 1 4.2499 -0.3866 -1.2470 29 1 5.8653 1.4040 -2.4525 30 1 6.2530 0.8715 -0.7876 31 1 6.5242 3.0217 0.8032 32 1 9.2933 7.2840 -2.5823 33 1 4.2848 3.0574 1.0133 34 1 3.2433 3.3854 -0.4003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192993751.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:33 Heat of formation + Delta-G solvation = -219.115933 kcal Electronic energy + Delta-G solvation = -19977.755696 eV Core-core repulsion = 16614.413537 eV Total energy + Delta-G solvation = -3363.342159 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.68616 -39.26538 -37.45694 -37.29095 -36.09049 -35.20007 -34.32619 -30.22625 -29.10134 -28.24417 -27.69880 -23.54212 -21.72189 -21.07244 -20.80101 -19.45400 -18.74830 -18.18250 -17.67817 -17.49512 -17.04236 -16.85444 -15.93625 -15.63754 -15.23880 -14.94419 -14.54820 -14.04911 -14.00824 -13.71532 -13.34573 -13.17413 -13.03753 -13.01624 -12.63078 -12.46913 -12.38559 -12.31103 -12.16106 -11.99718 -11.80039 -11.71708 -11.65839 -11.35066 -11.24598 -10.96929 -10.16225 -8.74873 -7.46981 0.40012 1.16536 1.33699 1.34007 1.49874 1.76227 2.20946 2.58657 2.99959 3.44099 3.51741 3.77320 3.82274 4.24108 4.33986 4.35131 4.35758 4.38965 4.43847 4.50848 4.55291 4.69942 4.75476 4.82495 5.01451 5.11551 5.24700 5.28794 5.32605 5.42879 5.52815 5.91253 6.47108 6.73446 6.79872 8.21411 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.004822 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.417256 B = 5805.241324 C = 6465.021413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.472 3.528 4 O -0.539 6.539 5 C -0.082 4.082 6 H 0.143 0.857 7 C -0.097 4.097 8 C -0.140 4.140 9 C 0.146 3.854 10 H 0.076 0.924 11 N -1.112 6.112 12 S 2.722 3.278 13 O -1.047 7.047 14 O -1.037 7.037 15 C -1.045 5.045 16 H 0.117 0.883 17 C 0.072 3.928 18 N -0.893 5.893 19 Si 0.986 3.014 20 H -0.255 1.255 21 H -0.262 1.262 22 H -0.250 1.250 23 C -0.117 4.117 24 H 0.059 0.941 25 H 0.133 0.867 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.417 0.583 32 H 0.299 0.701 33 H 0.092 0.908 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.344 -12.659 3.679 20.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.317 3.683 4 O -0.429 6.429 5 C -0.101 4.101 6 H 0.161 0.839 7 C -0.135 4.135 8 C -0.179 4.179 9 C 0.038 3.962 10 H 0.094 0.906 11 N -0.871 5.871 12 S 2.823 3.177 13 O -1.037 7.037 14 O -1.027 7.027 15 C -1.178 5.178 16 H 0.135 0.865 17 C -0.141 4.141 18 N -0.524 5.524 19 Si 0.804 3.196 20 H -0.180 1.180 21 H -0.186 1.186 22 H -0.174 1.174 23 C -0.157 4.157 24 H 0.078 0.922 25 H 0.151 0.849 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.127 0.873 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.251 0.749 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.503 -12.547 3.273 19.454 hybrid contribution -0.636 1.377 0.117 1.521 sum -15.139 -11.170 3.390 19.116 Atomic orbital electron populations 1.23547 0.75063 1.05681 1.02380 1.86510 1.24736 1.32528 1.83578 1.23947 0.92407 0.81124 0.70870 1.90659 1.67856 1.37529 1.46812 1.21967 0.85924 0.98647 1.03566 0.83950 1.22435 0.94685 1.01815 0.94560 1.22909 0.98133 0.94465 1.02408 1.21442 0.84762 0.96543 0.93435 0.90624 1.55519 1.39590 1.68542 1.23470 0.99817 0.72037 0.74216 0.71673 1.93309 1.62240 1.86324 1.61842 1.93313 1.83635 1.78475 1.47270 1.30986 1.10054 1.22576 1.54158 0.86474 1.25952 0.94407 1.04007 0.89751 1.69981 1.09224 1.37343 1.35876 0.85186 0.79582 0.75730 0.79056 1.17958 1.18576 1.17357 1.22451 0.96447 0.95207 1.01551 0.92239 0.84938 0.92079 0.90823 0.87254 0.91268 0.89553 0.74856 0.89136 0.88990 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.65 10.56 -51.34 -0.54 -7.19 16 3 C 0.47 10.67 7.25 71.24 0.52 11.18 16 4 O -0.54 -15.71 15.17 21.98 0.33 -15.38 16 5 C -0.08 -1.63 3.36 -10.46 -0.04 -1.67 16 6 H 0.14 2.07 8.14 -2.38 -0.02 2.05 16 7 C -0.10 -1.86 6.32 31.89 0.20 -1.66 16 8 C -0.14 -3.74 6.53 31.67 0.21 -3.53 16 9 C 0.15 4.69 3.44 45.71 0.16 4.84 16 10 H 0.08 2.74 7.91 -2.39 -0.02 2.72 16 11 N -1.11 -41.74 5.40 -166.38 -0.90 -42.64 16 12 S 2.72 144.06 4.93 -56.49 -0.28 143.78 16 13 O -1.05 -62.21 18.02 -128.00 -2.31 -64.51 16 14 O -1.04 -60.47 17.78 -128.00 -2.28 -62.74 16 15 C -1.04 -57.62 9.62 67.74 0.65 -56.96 16 16 H 0.12 5.87 7.81 -2.91 -0.02 5.85 16 17 C 0.07 4.02 5.46 84.66 0.46 4.48 16 18 N -0.89 -53.48 13.19 21.45 0.28 -53.19 16 19 Si 0.99 41.80 29.54 68.60 2.03 43.83 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 22 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 23 C -0.12 -3.04 5.95 31.32 0.19 -2.85 16 24 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 25 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 27 H 0.07 1.43 8.05 -2.38 -0.02 1.41 16 28 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.09 2.15 8.05 -2.39 -0.02 2.14 16 31 H 0.42 13.00 8.67 -96.75 -0.84 12.17 16 32 H 0.30 16.06 8.31 -92.71 -0.77 15.29 16 33 H 0.09 2.20 7.75 -2.39 -0.02 2.18 16 34 H 0.08 2.29 6.85 -2.39 -0.02 2.27 16 Total: -1.00 -79.31 306.65 0.17 -79.14 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.28 Total: 23.53 kcal Atomic # 6 Polarization: -48.17 SS G_CDS: 3.54 Total: -44.62 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -0.62 Total: -95.84 kcal Atomic # 8 Polarization: -145.04 SS G_CDS: -4.79 Total: -149.83 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 144.06 SS G_CDS: -0.28 Total: 143.78 kcal Total: -79.31 0.17 -79.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993751.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.973 kcal (2) G-P(sol) polarization free energy of solvation -79.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds