Wall clock time and date at job start Mon Mar 30 2020 02:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 117.00325 * 2 1 4 4 O 1.20831 * 119.99662 * 0.27966 * 3 2 1 5 5 C 1.50699 * 120.00528 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.01276 * 322.75849 * 5 3 2 7 7 C 1.54258 * 110.03377 * 201.30854 * 5 3 2 8 8 C 1.54895 * 104.19740 * 217.10565 * 7 5 3 9 9 C 1.54887 * 102.74569 * 37.94374 * 8 7 5 10 10 C 1.53875 * 110.02910 * 84.13940 * 5 3 2 11 11 H 1.08994 * 110.03670 * 238.56973 * 10 5 3 12 12 N 1.46507 * 110.03361 * 0.02562 * 10 5 3 13 13 S 1.65602 * 119.99715 * 233.12934 * 12 10 5 14 14 O 1.42099 * 106.40075 * 178.53714 * 13 12 10 15 15 O 1.42100 * 106.40145 * 311.45951 * 13 12 10 16 16 C 1.76204 * 107.21793 * 65.00177 * 13 12 10 17 17 H 1.08007 * 119.99653 * 359.97438 * 16 13 12 18 18 C 1.37867 * 120.00041 * 179.97438 * 16 13 12 19 19 N 1.31513 * 119.99937 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 120.00122 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46878 * 89.99941 * 20 18 16 22 22 H 1.48500 * 109.46990 * 210.00139 * 20 18 16 23 23 H 1.48499 * 109.46913 * 329.99967 * 20 18 16 24 24 H 1.09003 * 109.47197 * 299.99888 * 1 2 3 25 25 H 1.09002 * 109.47274 * 59.99642 * 1 2 3 26 26 H 1.08998 * 109.47333 * 179.97438 * 1 2 3 27 27 H 1.08998 * 110.48920 * 335.78787 * 7 5 3 28 28 H 1.09000 * 110.48352 * 98.43125 * 7 5 3 29 29 H 1.08996 * 110.75565 * 279.63291 * 8 7 5 30 30 H 1.08992 * 110.91442 * 156.33343 * 8 7 5 31 31 H 1.09004 * 110.48935 * 203.38015 * 9 8 7 32 32 H 1.08998 * 110.48576 * 80.73750 * 9 8 7 33 33 H 0.96992 * 120.00138 * 53.13036 * 12 10 5 34 34 H 0.97007 * 119.99718 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0051 5 6 3.5663 1.2749 0.0006 6 1 3.9813 0.4803 0.6207 7 6 4.0232 2.6510 0.5271 8 6 5.2624 2.9957 -0.3358 9 6 4.8640 2.4623 -1.7343 10 6 4.1009 1.1548 -1.4373 11 1 4.7761 0.3027 -1.5147 12 7 2.9866 1.0003 -2.3758 13 16 2.9730 -0.2651 -3.4439 14 8 1.7624 -0.1560 -4.1799 15 8 4.2553 -0.2876 -4.0557 16 6 2.8475 -1.7457 -2.4967 17 1 2.7969 -1.6946 -1.4191 18 6 2.8140 -2.9692 -3.1313 19 7 2.8751 -3.0312 -4.4435 20 14 2.6817 -4.5388 -2.1271 21 1 1.2502 -4.8809 -1.9296 22 1 3.3604 -5.6459 -2.8475 23 1 3.3294 -4.3374 -0.8061 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.2390 3.3942 0.3827 28 1 4.2979 2.5846 1.5798 29 1 6.1477 2.4802 0.0364 30 1 5.4282 4.0725 -0.3659 31 1 5.7524 2.2581 -2.3321 32 1 4.2157 3.1750 -2.2440 33 1 2.2569 1.6393 -2.3716 34 1 2.8512 -3.8921 -4.8900 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192994683.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:24 Heat of formation + Delta-G solvation = -215.888455 kcal Electronic energy + Delta-G solvation = -21188.048217 eV Core-core repulsion = 17824.846011 eV Total energy + Delta-G solvation = -3363.202205 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77261 -39.14811 -37.41565 -37.25004 -36.14722 -35.16439 -34.24921 -30.80871 -28.46353 -28.20333 -27.82447 -23.52619 -21.76519 -21.06490 -20.68342 -19.62619 -18.59109 -18.40688 -17.88573 -17.35977 -16.88933 -16.24914 -16.08961 -15.88523 -15.50453 -14.86037 -14.42331 -14.22579 -13.96844 -13.66143 -13.29819 -13.03432 -12.97845 -12.87771 -12.67181 -12.52096 -12.44813 -12.26036 -12.05810 -11.91596 -11.81873 -11.69546 -11.52250 -11.33099 -11.20313 -10.96562 -10.29705 -8.70549 -7.41045 0.33196 1.20416 1.38194 1.38534 1.55261 1.87619 2.24877 2.63737 2.90699 3.49419 3.54745 3.76022 3.84766 4.22689 4.28842 4.31606 4.35405 4.40312 4.48946 4.49671 4.56843 4.71912 4.73682 4.84291 5.07734 5.23385 5.25104 5.31233 5.38907 5.45819 5.56819 6.02993 6.15992 6.78538 6.85186 8.26318 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.018769 B = 0.008457 C = 0.007231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.447502 B = 3310.178503 C = 3871.178489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.476 3.524 4 O -0.537 6.537 5 C -0.102 4.102 6 H 0.135 0.865 7 C -0.109 4.109 8 C -0.108 4.108 9 C -0.140 4.140 10 C 0.156 3.844 11 H 0.103 0.897 12 N -1.122 6.122 13 S 2.711 3.289 14 O -1.050 7.050 15 O -1.039 7.039 16 C -1.020 5.020 17 H 0.131 0.869 18 C 0.072 3.928 19 N -0.899 5.899 20 Si 0.989 3.011 21 H -0.258 1.258 22 H -0.268 1.268 23 H -0.242 1.242 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.118 0.882 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.406 0.594 34 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.439 6.561 13.940 15.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.321 3.679 4 O -0.427 6.427 5 C -0.123 4.123 6 H 0.153 0.847 7 C -0.146 4.146 8 C -0.146 4.146 9 C -0.179 4.179 10 C 0.048 3.952 11 H 0.121 0.879 12 N -0.879 5.879 13 S 2.813 3.187 14 O -1.041 7.041 15 O -1.029 7.029 16 C -1.154 5.154 17 H 0.149 0.851 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.807 3.193 21 H -0.182 1.182 22 H -0.192 1.192 23 H -0.164 1.164 24 H 0.096 0.904 25 H 0.069 0.931 26 H 0.136 0.864 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.239 0.761 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.422 6.737 12.793 14.660 hybrid contribution -1.023 -0.789 0.145 1.300 sum 1.400 5.948 12.938 14.308 Atomic orbital electron populations 1.23474 0.75725 1.05175 1.02301 1.86589 1.24334 1.33260 1.83122 1.23841 0.92693 0.81068 0.70324 1.90584 1.67757 1.36893 1.47454 1.22410 0.86614 1.04001 0.99306 0.84662 1.22456 0.98563 0.92564 1.01059 1.22457 0.97540 1.02417 0.92180 1.22881 1.00190 0.95234 0.99584 1.21572 0.86860 1.01154 0.85566 0.87883 1.55773 1.32035 1.45153 1.54942 1.00193 0.71614 0.73955 0.72971 1.93302 1.49662 1.88156 1.72935 1.93313 1.44715 1.88136 1.76745 1.30776 1.65679 1.10544 1.08426 0.85119 1.25988 0.87673 1.04692 0.95697 1.70017 1.41983 1.30547 1.10570 0.85147 0.79884 0.74927 0.79320 1.18187 1.19244 1.16435 0.90426 0.93141 0.86414 0.90822 0.88062 0.88827 0.89045 0.90299 0.91321 0.76126 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.96 16 2 O -0.36 -12.10 10.01 -51.44 -0.51 -12.61 16 3 C 0.48 15.37 5.21 71.24 0.37 15.74 16 4 O -0.54 -18.69 15.15 21.95 0.33 -18.35 16 5 C -0.10 -2.70 3.41 -10.82 -0.04 -2.74 16 6 H 0.14 2.90 8.14 -2.39 -0.02 2.89 16 7 C -0.11 -2.18 6.29 31.67 0.20 -1.98 16 8 C -0.11 -1.92 6.91 31.89 0.22 -1.70 16 9 C -0.14 -3.67 6.53 31.67 0.21 -3.46 16 10 C 0.16 5.03 3.51 45.72 0.16 5.19 16 11 H 0.10 3.46 7.81 -2.39 -0.02 3.44 16 12 N -1.12 -45.68 4.35 -166.36 -0.72 -46.40 16 13 S 2.71 146.35 4.89 -56.49 -0.28 146.08 16 14 O -1.05 -64.30 18.02 -128.00 -2.31 -66.61 16 15 O -1.04 -61.58 17.69 -128.00 -2.26 -63.85 16 16 C -1.02 -54.37 9.72 67.73 0.66 -53.71 16 17 H 0.13 6.23 7.25 -2.91 -0.02 6.21 16 18 C 0.07 3.91 5.46 84.65 0.46 4.38 16 19 N -0.90 -53.35 13.19 21.44 0.28 -53.07 16 20 Si 0.99 40.30 29.54 68.60 2.03 42.32 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 22 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 23 H -0.24 -8.99 7.11 99.48 0.71 -8.29 16 24 H 0.08 1.85 8.13 -2.39 -0.02 1.83 16 25 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.12 2.89 8.14 -2.39 -0.02 2.88 16 27 H 0.07 1.72 6.78 -2.39 -0.02 1.71 16 28 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.07 1.87 8.05 -2.39 -0.02 1.86 16 33 H 0.41 15.86 7.91 -96.75 -0.77 15.09 16 34 H 0.30 15.87 8.31 -92.70 -0.77 15.10 16 Total: -1.00 -77.78 302.98 0.35 -77.43 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.35 Total: 31.38 kcal Atomic # 6 Polarization: -39.76 SS G_CDS: 3.44 Total: -36.32 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -0.44 Total: -99.47 kcal Atomic # 8 Polarization: -156.66 SS G_CDS: -4.75 Total: -161.42 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 16 Polarization: 146.35 SS G_CDS: -0.28 Total: 146.08 kcal Total: -77.78 0.35 -77.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994683.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.458 kcal (2) G-P(sol) polarization free energy of solvation -77.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds