Wall clock time and date at job start Mon Mar 30 2020 01:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46884 * 2 1 4 4 C 1.34231 * 116.99983 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00142 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00053 * 180.02562 * 4 3 2 7 7 H 1.08997 * 112.85409 * 48.80300 * 6 4 3 8 8 C 1.53778 * 113.61647 * 180.02562 * 6 4 3 9 9 C 1.53784 * 87.08423 * 139.98102 * 8 6 4 10 10 H 1.08998 * 113.61788 * 89.11374 * 9 8 6 11 11 N 1.46507 * 113.61384 * 220.02269 * 9 8 6 12 12 S 1.65594 * 119.99730 * 214.99622 * 11 9 8 13 13 O 1.42100 * 106.40368 * 178.53992 * 12 11 9 14 14 O 1.42096 * 106.40412 * 311.46010 * 12 11 9 15 15 C 1.76202 * 107.21971 * 65.00099 * 12 11 9 16 16 H 1.08006 * 119.99921 * 359.97438 * 15 12 11 17 17 C 1.37878 * 120.00251 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99833 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99926 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47373 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47282 * 119.99729 * 19 17 15 22 22 H 1.48504 * 109.47248 * 239.99952 * 19 17 15 23 23 C 1.53783 * 87.08032 * 334.56783 * 9 8 6 24 24 H 1.09001 * 109.47194 * 299.99482 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99654 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00338 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00518 * 2 1 3 29 29 H 1.08999 * 113.61704 * 254.52629 * 8 6 4 30 30 H 1.09006 * 113.61615 * 25.34841 * 8 6 4 31 31 H 0.97000 * 119.99943 * 34.99695 * 11 9 8 32 32 H 0.96996 * 119.99824 * 179.97438 * 18 17 15 33 33 H 1.09001 * 113.61357 * 270.88594 * 23 9 8 34 34 H 1.08996 * 113.61413 * 139.98285 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.4708 3.5813 0.7569 8 6 5.4581 2.9682 0.0011 9 6 5.3563 4.1431 -0.9860 10 1 5.2992 5.1174 -0.5007 11 7 6.3542 4.0973 -2.0577 12 16 7.0030 5.5030 -2.6453 13 8 7.9491 5.1249 -3.6359 14 8 5.9091 6.3714 -2.9067 15 6 7.9221 6.2408 -1.3355 16 1 7.9709 5.7573 -0.3710 17 6 8.5789 7.4354 -1.5418 18 7 8.5199 8.0239 -2.7165 19 14 9.5527 8.2179 -0.1530 20 1 9.4624 7.3629 1.0578 21 1 10.9748 8.3511 -0.5593 22 1 8.9955 9.5614 0.1465 23 6 3.9861 3.5777 -1.3956 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 5.8894 3.2429 0.9637 30 1 5.9127 2.0748 -0.4269 31 1 6.6347 3.2437 -2.4230 32 1 8.9817 8.8644 -2.8615 33 1 4.0382 2.8514 -2.2067 34 1 3.2290 4.3443 -1.5605 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995138.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:35 Heat of formation + Delta-G solvation = -167.950167 kcal Electronic energy + Delta-G solvation = -19592.388908 eV Core-core repulsion = 16231.265463 eV Total energy + Delta-G solvation = -3361.123445 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.81292 -38.57767 -36.51514 -35.16664 -33.93820 -33.13020 -32.42422 -31.79091 -26.29726 -26.12874 -25.59650 -23.23362 -21.30354 -19.72852 -18.89969 -18.01636 -17.40236 -16.73660 -16.52845 -16.21601 -15.30281 -14.80230 -14.74359 -14.18890 -13.98307 -13.60471 -13.18457 -13.04565 -12.63453 -12.39720 -12.14302 -11.99845 -11.83212 -11.66984 -11.23888 -11.19928 -11.07784 -10.71875 -10.69001 -10.58219 -10.41927 -10.27943 -10.18147 -10.00077 -9.25960 -9.00425 -8.52075 -6.70387 -5.32305 2.13558 2.32180 2.59240 3.05527 3.14307 3.21097 4.06207 4.39438 4.51532 4.59195 4.64578 4.67263 4.73823 4.92921 4.98619 5.00583 5.01693 5.43873 5.49941 5.61587 5.69891 5.76480 5.82234 5.87965 6.03324 6.09012 6.23202 6.34071 6.56728 6.90457 7.32298 7.70118 7.87723 7.98173 8.89148 10.23822 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.035274 B = 0.004000 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.587120 B = 6998.734828 C = 7317.585652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.357 6.357 4 C 0.475 3.525 5 O -0.509 6.509 6 C -0.114 4.114 7 H 0.128 0.872 8 C -0.129 4.129 9 C 0.147 3.853 10 H 0.123 0.877 11 N -1.122 6.122 12 S 2.712 3.288 13 O -1.007 7.007 14 O -1.005 7.005 15 C -1.021 5.021 16 H 0.103 0.897 17 C 0.132 3.868 18 N -0.845 5.845 19 Si 0.920 3.080 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.271 1.271 23 C -0.136 4.136 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.403 0.597 32 H 0.290 0.710 33 H 0.088 0.912 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.182 -11.282 7.719 18.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.274 6.274 4 C 0.318 3.682 5 O -0.397 6.397 6 C -0.134 4.134 7 H 0.146 0.854 8 C -0.168 4.168 9 C 0.037 3.963 10 H 0.141 0.859 11 N -0.873 5.873 12 S 2.812 3.188 13 O -0.997 6.997 14 O -0.995 6.995 15 C -1.154 5.154 16 H 0.122 0.878 17 C -0.085 4.085 18 N -0.475 5.475 19 Si 0.744 3.256 20 H -0.186 1.186 21 H -0.197 1.197 22 H -0.196 1.196 23 C -0.175 4.175 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.234 0.766 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.123 -10.951 6.749 17.676 hybrid contribution 0.835 -0.188 1.202 1.476 sum -11.288 -11.139 7.951 17.740 Atomic orbital electron populations 1.21802 0.92681 1.02848 1.03611 1.23011 0.95367 0.80576 1.02497 1.86542 1.24874 1.32040 1.83962 1.23687 0.80240 0.92593 0.71638 1.90647 1.60484 1.43077 1.45450 1.22470 0.98008 0.90556 1.02332 0.85374 1.23467 0.91617 1.00318 1.01386 1.21901 0.87029 0.99272 0.88070 0.85918 1.56003 1.55229 1.25692 1.50422 1.00518 0.73144 0.70599 0.74573 1.93377 1.62989 1.82856 1.60528 1.93367 1.56274 1.64088 1.85757 1.30605 1.48909 1.18376 1.17532 0.87834 1.24750 0.92749 0.94610 0.96436 1.69906 1.37763 1.17571 1.22227 0.86137 0.79288 0.79061 0.81095 1.18595 1.19670 1.19631 1.23516 0.99898 1.00387 0.93737 0.91481 0.91372 0.90374 0.91365 0.91306 0.89788 0.88194 0.76555 0.89947 0.89305 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.29 37.16 0.38 -0.61 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.36 -4.19 10.22 -39.26 -0.40 -4.59 16 4 C 0.48 6.21 7.48 36.00 0.27 6.48 16 5 O -0.51 -7.87 15.65 -18.75 -0.29 -8.17 16 6 C -0.11 -1.36 4.26 -90.96 -0.39 -1.74 16 7 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 8 C -0.13 -1.71 7.19 -25.92 -0.19 -1.89 16 9 C 0.15 2.33 4.35 -67.11 -0.29 2.04 16 10 H 0.12 1.97 8.05 -51.93 -0.42 1.55 16 11 N -1.12 -21.38 5.79 -4.19 -0.02 -21.41 16 12 S 2.71 69.97 4.96 -107.50 -0.53 69.43 16 13 O -1.01 -29.23 18.02 -57.17 -1.03 -30.26 16 14 O -1.00 -28.43 17.78 -57.17 -1.02 -29.45 16 15 C -1.02 -27.33 9.72 30.60 0.30 -27.03 16 16 H 0.10 2.52 7.81 -52.48 -0.41 2.11 16 17 C 0.13 3.64 5.46 -17.82 -0.10 3.54 16 18 N -0.84 -24.59 13.19 55.43 0.73 -23.86 16 19 Si 0.92 20.24 29.54 -169.99 -5.02 15.22 16 20 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 C -0.14 -1.83 7.43 -25.91 -0.19 -2.02 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 28 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.10 1.39 7.43 -51.93 -0.39 1.01 16 31 H 0.40 6.78 8.94 -34.47 -0.31 6.47 16 32 H 0.29 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.09 1.19 8.09 -51.93 -0.42 0.77 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 312.60 15.07 4.71 4.71 Total: -1.00 -35.83 312.60 -7.31 -43.14 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.46 Total: 5.70 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 0.02 Total: -20.47 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.71 Total: -45.27 kcal Atomic # 8 Polarization: -69.73 SS G_CDS: -2.74 Total: -72.47 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 69.97 SS G_CDS: -0.53 Total: 69.43 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.83 -7.31 -43.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995138.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.806 kcal (2) G-P(sol) polarization free energy of solvation -35.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds