Wall clock time and date at job start Mon Mar 30 2020 01:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46884 * 2 1 4 4 C 1.34231 * 116.99983 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00142 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00053 * 180.02562 * 4 3 2 7 7 H 1.08997 * 112.85409 * 48.80300 * 6 4 3 8 8 C 1.53778 * 113.61647 * 180.02562 * 6 4 3 9 9 C 1.53784 * 87.08423 * 139.98102 * 8 6 4 10 10 H 1.08998 * 113.61788 * 89.11374 * 9 8 6 11 11 N 1.46507 * 113.61384 * 220.02269 * 9 8 6 12 12 S 1.65594 * 119.99730 * 214.99622 * 11 9 8 13 13 O 1.42100 * 106.40368 * 178.53992 * 12 11 9 14 14 O 1.42096 * 106.40412 * 311.46010 * 12 11 9 15 15 C 1.76202 * 107.21971 * 65.00099 * 12 11 9 16 16 H 1.08006 * 119.99921 * 359.97438 * 15 12 11 17 17 C 1.37878 * 120.00251 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99833 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99926 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47373 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47282 * 119.99729 * 19 17 15 22 22 H 1.48504 * 109.47248 * 239.99952 * 19 17 15 23 23 C 1.53783 * 87.08032 * 334.56783 * 9 8 6 24 24 H 1.09001 * 109.47194 * 299.99482 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99654 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00338 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00518 * 2 1 3 29 29 H 1.08999 * 113.61704 * 254.52629 * 8 6 4 30 30 H 1.09006 * 113.61615 * 25.34841 * 8 6 4 31 31 H 0.97000 * 119.99943 * 34.99695 * 11 9 8 32 32 H 0.96996 * 119.99824 * 179.97438 * 18 17 15 33 33 H 1.09001 * 113.61357 * 270.88594 * 23 9 8 34 34 H 1.08996 * 113.61413 * 139.98285 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.4708 3.5813 0.7569 8 6 5.4581 2.9682 0.0011 9 6 5.3563 4.1431 -0.9860 10 1 5.2992 5.1174 -0.5007 11 7 6.3542 4.0973 -2.0577 12 16 7.0030 5.5030 -2.6453 13 8 7.9491 5.1249 -3.6359 14 8 5.9091 6.3714 -2.9067 15 6 7.9221 6.2408 -1.3355 16 1 7.9709 5.7573 -0.3710 17 6 8.5789 7.4354 -1.5418 18 7 8.5199 8.0239 -2.7165 19 14 9.5527 8.2179 -0.1530 20 1 9.4624 7.3629 1.0578 21 1 10.9748 8.3511 -0.5593 22 1 8.9955 9.5614 0.1465 23 6 3.9861 3.5777 -1.3956 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 5.8894 3.2429 0.9637 30 1 5.9127 2.0748 -0.4269 31 1 6.6347 3.2437 -2.4230 32 1 8.9817 8.8644 -2.8615 33 1 4.0382 2.8514 -2.2067 34 1 3.2290 4.3443 -1.5605 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192995138.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:34 Heat of formation + Delta-G solvation = -195.541099 kcal Electronic energy + Delta-G solvation = -19593.585341 eV Core-core repulsion = 16231.265463 eV Total energy + Delta-G solvation = -3362.319878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.83201 -39.67084 -37.54542 -37.31179 -36.09342 -35.17057 -33.83536 -32.54436 -28.22762 -27.36732 -26.67899 -24.00143 -22.37352 -21.22030 -20.48966 -19.44572 -18.83236 -18.17308 -17.77395 -17.52258 -17.00095 -16.25477 -16.04764 -15.87809 -15.30210 -15.05536 -14.28760 -14.03495 -13.84273 -13.58775 -13.46414 -13.34086 -13.08171 -13.00193 -12.87122 -12.52042 -12.47536 -12.39420 -12.24920 -12.19293 -11.82229 -11.80206 -11.51232 -11.25899 -11.23062 -10.90879 -10.13137 -8.72400 -7.44746 0.39146 1.12363 1.36395 1.37989 1.55212 1.69120 2.24045 2.61558 3.02348 3.35560 3.47025 3.68846 3.81794 3.92005 4.01194 4.04666 4.10226 4.35769 4.45053 4.53297 4.73178 4.79419 4.81944 4.92926 4.94067 5.01636 5.05279 5.16391 5.30133 5.45859 5.54455 5.95119 6.38181 6.72286 6.82266 8.24190 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.035274 B = 0.004000 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.587120 B = 6998.734828 C = 7317.585652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 O -0.359 6.359 4 C 0.478 3.522 5 O -0.537 6.537 6 C -0.099 4.099 7 H 0.160 0.840 8 C -0.121 4.121 9 C 0.124 3.876 10 H 0.121 0.879 11 N -1.108 6.108 12 S 2.718 3.282 13 O -1.050 7.050 14 O -1.039 7.039 15 C -1.037 5.037 16 H 0.124 0.876 17 C 0.069 3.931 18 N -0.895 5.895 19 Si 0.991 3.009 20 H -0.244 1.244 21 H -0.264 1.264 22 H -0.259 1.259 23 C -0.134 4.134 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.414 0.586 32 H 0.298 0.702 33 H 0.086 0.914 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.893 -11.731 10.031 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.276 6.276 4 C 0.322 3.678 5 O -0.427 6.427 6 C -0.119 4.119 7 H 0.177 0.823 8 C -0.161 4.161 9 C 0.016 3.984 10 H 0.139 0.861 11 N -0.865 5.865 12 S 2.819 3.181 13 O -1.040 7.040 14 O -1.028 7.028 15 C -1.171 5.171 16 H 0.142 0.858 17 C -0.144 4.144 18 N -0.527 5.527 19 Si 0.809 3.191 20 H -0.167 1.167 21 H -0.189 1.189 22 H -0.183 1.183 23 C -0.174 4.174 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.118 0.882 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.248 0.752 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.868 -11.420 9.049 19.439 hybrid contribution 0.959 -0.155 0.464 1.076 sum -11.909 -11.574 9.513 19.139 Atomic orbital electron populations 1.21822 0.90450 1.04320 1.03743 1.23300 0.97131 0.79396 1.02483 1.86538 1.24013 1.33567 1.83443 1.23816 0.80547 0.92554 0.70860 1.90641 1.61172 1.44020 1.46862 1.22450 0.97097 0.90419 1.01923 0.82276 1.23398 0.92945 0.98519 1.01215 1.22319 0.87472 1.00539 0.88094 0.86095 1.55389 1.55691 1.24086 1.51328 0.99952 0.72478 0.71283 0.74364 1.93309 1.64393 1.83759 1.62522 1.93314 1.57062 1.66054 1.86388 1.30952 1.48823 1.18845 1.18467 0.85778 1.26018 0.93799 0.95274 0.99269 1.70003 1.39347 1.18603 1.24750 0.85090 0.77633 0.78598 0.77766 1.16715 1.18901 1.18345 1.23485 0.98486 1.00569 0.94866 0.91064 0.91476 0.88246 0.91116 0.91684 0.87983 0.88918 0.75209 0.89203 0.89530 0.88385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.29 71.98 0.74 -0.85 16 2 C 0.05 0.85 6.19 71.98 0.45 1.30 16 3 O -0.36 -7.75 10.22 -51.42 -0.53 -8.27 16 4 C 0.48 11.61 7.48 71.24 0.53 12.14 16 5 O -0.54 -15.95 15.65 21.98 0.34 -15.61 16 6 C -0.10 -2.12 4.26 -11.01 -0.05 -2.17 16 7 H 0.16 2.43 8.14 -2.39 -0.02 2.41 16 8 C -0.12 -2.98 7.19 31.12 0.22 -2.75 16 9 C 0.12 3.78 4.35 45.52 0.20 3.98 16 10 H 0.12 3.74 8.05 -2.39 -0.02 3.72 16 11 N -1.11 -42.05 5.79 -167.18 -0.97 -43.02 16 12 S 2.72 142.54 4.96 -56.49 -0.28 142.26 16 13 O -1.05 -62.65 18.02 -128.00 -2.31 -64.95 16 14 O -1.04 -60.04 17.78 -128.00 -2.28 -62.32 16 15 C -1.04 -55.24 9.72 67.73 0.66 -54.59 16 16 H 0.12 5.86 7.81 -2.91 -0.02 5.83 16 17 C 0.07 3.77 5.46 84.65 0.46 4.23 16 18 N -0.90 -52.91 13.19 21.45 0.28 -52.63 16 19 Si 0.99 40.36 29.54 68.60 2.03 42.39 16 20 H -0.24 -9.15 7.11 99.48 0.71 -8.44 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 23 C -0.13 -3.42 7.43 31.12 0.23 -3.19 16 24 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 28 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 29 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.09 2.45 7.43 -2.38 -0.02 2.43 16 31 H 0.41 13.89 8.94 -96.75 -0.87 13.03 16 32 H 0.30 15.79 8.31 -92.71 -0.77 15.02 16 33 H 0.09 2.24 8.09 -2.39 -0.02 2.22 16 34 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -77.97 312.60 -0.01 -77.98 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.25 Total: 26.09 kcal Atomic # 6 Polarization: -45.36 SS G_CDS: 3.45 Total: -41.91 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -0.68 Total: -95.64 kcal Atomic # 8 Polarization: -146.39 SS G_CDS: -4.76 Total: -151.15 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 16 Polarization: 142.54 SS G_CDS: -0.28 Total: 142.26 kcal Total: -77.97 -0.01 -77.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995138.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.565 kcal (2) G-P(sol) polarization free energy of solvation -77.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds