Wall clock time and date at job start Mon Mar 30 2020 01:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45203 * 109.46687 * 2 1 4 4 C 1.34227 * 116.99925 * 175.05367 * 3 2 1 5 5 O 1.20834 * 120.00037 * 5.13708 * 4 3 2 6 6 C 1.50703 * 120.00248 * 185.13084 * 4 3 2 7 7 C 1.53001 * 109.47157 * 175.80933 * 6 4 3 8 8 N 1.46506 * 115.55144 * 57.77114 * 7 6 4 9 9 S 1.65600 * 119.99661 * 65.49121 * 8 7 6 10 10 O 1.42108 * 106.40157 * 176.94353 * 9 8 7 11 11 O 1.42092 * 106.40618 * 309.86393 * 9 8 7 12 12 C 1.76197 * 107.21959 * 63.40521 * 9 8 7 13 13 H 1.08002 * 119.99785 * 5.01945 * 12 9 8 14 14 C 1.37882 * 120.00527 * 185.01697 * 12 9 8 15 15 N 1.31512 * 119.99491 * 5.00941 * 14 12 9 16 16 Si 1.86791 * 120.00281 * 185.00902 * 14 12 9 17 17 H 1.48502 * 109.47197 * 5.00371 * 16 14 12 18 18 H 1.48499 * 109.47306 * 124.99920 * 16 14 12 19 19 H 1.48499 * 109.47131 * 245.00116 * 16 14 12 20 20 C 1.52997 * 117.50143 * 272.10309 * 7 6 4 21 21 C 1.53002 * 117.50005 * 203.43862 * 7 6 4 22 22 H 1.08999 * 109.46865 * 184.97744 * 1 2 3 23 23 H 1.09004 * 109.47464 * 304.97944 * 1 2 3 24 24 H 1.08999 * 109.47372 * 64.97923 * 1 2 3 25 25 H 1.08992 * 109.47581 * 240.00580 * 2 1 3 26 26 H 1.08998 * 109.47321 * 119.99988 * 2 1 3 27 27 H 1.09004 * 109.46807 * 295.80565 * 6 4 3 28 28 H 1.08995 * 109.47378 * 55.80916 * 6 4 3 29 29 H 0.96998 * 120.00440 * 245.49438 * 8 7 6 30 30 H 0.96998 * 119.99893 * 180.02562 * 15 14 12 31 31 H 1.09007 * 117.49357 * 359.97438 * 20 7 6 32 32 H 1.08999 * 117.50422 * 145.01940 * 20 7 6 33 33 H 1.08994 * 117.49925 * 214.98273 * 21 7 6 34 34 H 1.08998 * 117.49380 * 359.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3404 1.5465 0.1031 5 8 4.0801 0.5910 0.0970 6 6 3.9073 2.9373 0.2264 7 6 5.4211 2.8547 0.4328 8 7 6.1645 2.1528 -0.6166 9 16 6.2259 2.7796 -2.1482 10 8 7.0692 1.9182 -2.9007 11 8 4.8849 3.0708 -2.5167 12 6 7.0609 4.3277 -2.0451 13 1 7.4890 4.6490 -1.1070 14 6 7.1679 5.1291 -3.1620 15 7 6.5632 4.7855 -4.2781 16 14 8.1717 6.7028 -3.0898 17 1 8.8449 6.8004 -1.7697 18 1 9.1940 6.6877 -4.1667 19 1 7.2743 7.8713 -3.2754 20 6 5.9322 2.7233 1.8688 21 6 6.1075 4.0419 1.1112 22 1 -0.3633 -1.0238 0.0892 23 1 -0.3634 0.5892 0.8420 24 1 -0.3634 0.4346 -0.9312 25 1 1.8934 -0.5137 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.6948 3.4983 -0.6837 28 1 3.4515 3.4413 1.0786 29 1 6.6206 1.3210 -0.4143 30 1 6.6388 5.3491 -5.0640 31 1 5.1899 2.6963 2.6667 32 1 6.8217 2.1151 2.0329 33 1 7.1122 4.3005 0.7771 34 1 5.4807 4.8820 1.4101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193008219.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:50 Heat of formation + Delta-G solvation = -156.925082 kcal Electronic energy + Delta-G solvation = -20535.445087 eV Core-core repulsion = 17174.799725 eV Total energy + Delta-G solvation = -3360.645362 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.18224 -37.93057 -36.05876 -35.13144 -33.90294 -33.08675 -31.78225 -31.13460 -29.32838 -26.12663 -23.41429 -22.24249 -21.37193 -19.79941 -18.77689 -17.41510 -17.23082 -16.56784 -16.12869 -16.04648 -15.29440 -14.79583 -14.50522 -14.12634 -13.91433 -13.42277 -13.05997 -12.85052 -12.42841 -12.31018 -11.97688 -11.64744 -11.51293 -11.40472 -11.22597 -11.06255 -10.72137 -10.68025 -10.53558 -10.36190 -10.23723 -10.13524 -10.06395 -9.41278 -9.24967 -8.91734 -8.43369 -6.67076 -5.28435 2.37310 2.64331 2.89673 3.06261 3.15126 3.21660 4.05527 4.07246 4.63544 4.66550 4.85747 4.92556 4.94047 5.05178 5.12998 5.28927 5.37040 5.60578 5.68094 5.77193 5.84712 5.87586 5.93078 5.96375 6.19746 6.26345 6.44022 6.62839 6.74995 6.95808 7.36178 7.99080 8.03030 8.15711 8.91648 10.26505 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.025078 B = 0.006031 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.266691 B = 4641.503332 C = 5017.840992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.362 6.362 4 C 0.472 3.528 5 O -0.501 6.501 6 C -0.100 4.100 7 C 0.131 3.869 8 N -1.094 6.094 9 S 2.713 3.287 10 O -1.013 7.013 11 O -1.002 7.002 12 C -1.016 5.016 13 H 0.105 0.895 14 C 0.133 3.867 15 N -0.843 5.843 16 Si 0.918 3.082 17 H -0.262 1.262 18 H -0.273 1.273 19 H -0.271 1.271 20 C -0.172 4.172 21 C -0.169 4.169 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.141 0.859 28 H 0.109 0.891 29 H 0.407 0.593 30 H 0.289 0.711 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.278 -2.543 11.991 14.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.280 6.280 4 C 0.315 3.685 5 O -0.387 6.387 6 C -0.138 4.138 7 C 0.039 3.961 8 N -0.846 5.846 9 S 2.814 3.186 10 O -1.004 7.004 11 O -0.992 6.992 12 C -1.150 5.150 13 H 0.124 0.876 14 C -0.085 4.085 15 N -0.473 5.473 16 Si 0.742 3.258 17 H -0.186 1.186 18 H -0.198 1.198 19 H -0.196 1.196 20 C -0.210 4.210 21 C -0.207 4.207 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.159 0.841 28 H 0.127 0.873 29 H 0.239 0.761 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.130 0.870 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.590 -3.135 10.946 13.684 hybrid contribution 1.046 0.702 0.298 1.295 sum -6.544 -2.433 11.244 13.235 Atomic orbital electron populations 1.21796 0.92964 1.02580 1.03507 1.22949 0.95098 0.80904 1.02421 1.86506 1.25538 1.31756 1.84194 1.23602 0.80045 0.92770 0.72039 1.90613 1.59684 1.43188 1.45243 1.21479 0.93016 0.91879 1.07471 1.19566 0.88431 0.99701 0.88432 1.55362 1.65810 1.35285 1.28161 1.00462 0.73937 0.75033 0.69189 1.93377 1.69537 1.69589 1.67868 1.93307 1.39152 1.86244 1.80492 1.30621 1.53360 1.26980 1.04028 0.87642 1.24748 0.91930 0.98567 0.93272 1.69942 1.36351 1.38721 1.02302 0.86166 0.79731 0.80606 0.79252 1.18582 1.19764 1.19627 1.23262 1.03332 1.01044 0.93408 1.23578 1.03441 0.91709 1.02021 0.90581 0.91585 0.91433 0.91278 0.91583 0.84120 0.87312 0.76102 0.90059 0.88606 0.88282 0.87043 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.29 37.16 0.38 -1.04 16 2 C 0.06 0.78 6.21 37.16 0.23 1.01 16 3 O -0.36 -5.83 10.22 -39.25 -0.40 -6.23 16 4 C 0.47 8.51 7.89 36.01 0.28 8.79 16 5 O -0.50 -9.95 14.98 -18.76 -0.28 -10.23 16 6 C -0.10 -1.67 5.36 -27.88 -0.15 -1.82 16 7 C 0.13 2.29 1.67 -131.82 -0.22 2.07 16 8 N -1.09 -23.06 4.82 0.54 0.00 -23.06 16 9 S 2.71 73.00 5.08 -107.50 -0.55 72.46 16 10 O -1.01 -30.74 18.02 -57.17 -1.03 -31.77 16 11 O -1.00 -28.75 15.44 -57.17 -0.88 -29.63 16 12 C -1.02 -27.37 9.39 30.60 0.29 -27.08 16 13 H 0.11 2.55 5.99 -52.49 -0.31 2.24 16 14 C 0.13 3.65 5.46 -17.82 -0.10 3.55 16 15 N -0.84 -24.66 13.02 55.43 0.72 -23.94 16 16 Si 0.92 20.25 29.54 -169.99 -5.02 15.22 16 17 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 20 C -0.17 -2.33 10.16 -26.69 -0.27 -2.60 16 21 C -0.17 -2.52 9.62 -26.69 -0.26 -2.78 16 22 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 27 H 0.14 2.71 6.37 -51.93 -0.33 2.38 16 28 H 0.11 1.33 8.11 -51.93 -0.42 0.90 16 29 H 0.41 7.98 8.96 -34.47 -0.31 7.67 16 30 H 0.29 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.11 1.78 6.62 -51.93 -0.34 1.44 16 34 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 307.93 15.07 4.64 4.64 Total: -1.00 -35.89 307.93 -6.84 -42.73 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -4.23 Total: 9.72 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 0.19 Total: -19.90 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 0.72 Total: -47.00 kcal Atomic # 8 Polarization: -75.27 SS G_CDS: -2.60 Total: -77.87 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 73.00 SS G_CDS: -0.55 Total: 72.46 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.89 -6.84 -42.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193008219.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.197 kcal (2) G-P(sol) polarization free energy of solvation -35.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds