Wall clock time and date at job start Mon Mar 30 2020 01:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45203 * 109.46687 * 2 1 4 4 C 1.34227 * 116.99925 * 175.05367 * 3 2 1 5 5 O 1.20834 * 120.00037 * 5.13708 * 4 3 2 6 6 C 1.50703 * 120.00248 * 185.13084 * 4 3 2 7 7 C 1.53001 * 109.47157 * 175.80933 * 6 4 3 8 8 N 1.46506 * 115.55144 * 57.77114 * 7 6 4 9 9 S 1.65600 * 119.99661 * 65.49121 * 8 7 6 10 10 O 1.42108 * 106.40157 * 176.94353 * 9 8 7 11 11 O 1.42092 * 106.40618 * 309.86393 * 9 8 7 12 12 C 1.76197 * 107.21959 * 63.40521 * 9 8 7 13 13 H 1.08002 * 119.99785 * 5.01945 * 12 9 8 14 14 C 1.37882 * 120.00527 * 185.01697 * 12 9 8 15 15 N 1.31512 * 119.99491 * 5.00941 * 14 12 9 16 16 Si 1.86791 * 120.00281 * 185.00902 * 14 12 9 17 17 H 1.48502 * 109.47197 * 5.00371 * 16 14 12 18 18 H 1.48499 * 109.47306 * 124.99920 * 16 14 12 19 19 H 1.48499 * 109.47131 * 245.00116 * 16 14 12 20 20 C 1.52997 * 117.50143 * 272.10309 * 7 6 4 21 21 C 1.53002 * 117.50005 * 203.43862 * 7 6 4 22 22 H 1.08999 * 109.46865 * 184.97744 * 1 2 3 23 23 H 1.09004 * 109.47464 * 304.97944 * 1 2 3 24 24 H 1.08999 * 109.47372 * 64.97923 * 1 2 3 25 25 H 1.08992 * 109.47581 * 240.00580 * 2 1 3 26 26 H 1.08998 * 109.47321 * 119.99988 * 2 1 3 27 27 H 1.09004 * 109.46807 * 295.80565 * 6 4 3 28 28 H 1.08995 * 109.47378 * 55.80916 * 6 4 3 29 29 H 0.96998 * 120.00440 * 245.49438 * 8 7 6 30 30 H 0.96998 * 119.99893 * 180.02562 * 15 14 12 31 31 H 1.09007 * 117.49357 * 359.97438 * 20 7 6 32 32 H 1.08999 * 117.50422 * 145.01940 * 20 7 6 33 33 H 1.08994 * 117.49925 * 214.98273 * 21 7 6 34 34 H 1.08998 * 117.49380 * 359.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3404 1.5465 0.1031 5 8 4.0801 0.5910 0.0970 6 6 3.9073 2.9373 0.2264 7 6 5.4211 2.8547 0.4328 8 7 6.1645 2.1528 -0.6166 9 16 6.2259 2.7796 -2.1482 10 8 7.0692 1.9182 -2.9007 11 8 4.8849 3.0708 -2.5167 12 6 7.0609 4.3277 -2.0451 13 1 7.4890 4.6490 -1.1070 14 6 7.1679 5.1291 -3.1620 15 7 6.5632 4.7855 -4.2781 16 14 8.1717 6.7028 -3.0898 17 1 8.8449 6.8004 -1.7697 18 1 9.1940 6.6877 -4.1667 19 1 7.2743 7.8713 -3.2754 20 6 5.9322 2.7233 1.8688 21 6 6.1075 4.0419 1.1112 22 1 -0.3633 -1.0238 0.0892 23 1 -0.3634 0.5892 0.8420 24 1 -0.3634 0.4346 -0.9312 25 1 1.8934 -0.5137 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.6948 3.4983 -0.6837 28 1 3.4515 3.4413 1.0786 29 1 6.6206 1.3210 -0.4143 30 1 6.6388 5.3491 -5.0640 31 1 5.1899 2.6963 2.6667 32 1 6.8217 2.1151 2.0329 33 1 7.1122 4.3005 0.7771 34 1 5.4807 4.8820 1.4101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193008219.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:50 Heat of formation + Delta-G solvation = -184.939462 kcal Electronic energy + Delta-G solvation = -20536.659882 eV Core-core repulsion = 17174.799725 eV Total energy + Delta-G solvation = -3361.860156 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.50604 -39.20379 -37.39960 -37.31955 -36.10176 -35.16031 -32.80925 -32.68526 -30.56275 -28.23377 -24.44088 -23.37553 -22.62661 -21.28516 -20.73517 -19.17487 -18.67041 -18.19933 -17.74241 -17.40942 -17.06675 -16.40077 -16.04771 -15.68414 -15.35845 -15.16774 -14.21792 -14.12548 -13.89285 -13.55114 -13.52084 -13.15821 -12.99422 -12.78489 -12.68156 -12.51088 -12.46798 -12.29247 -12.27247 -12.17822 -11.95381 -11.50715 -11.45494 -11.24745 -10.89650 -10.78067 -10.06186 -8.70584 -7.42691 0.38346 1.26963 1.36494 1.38343 1.55529 1.71400 2.24095 2.62451 2.82160 2.99970 3.61354 3.67639 3.81429 3.98927 4.03767 4.10205 4.20248 4.30517 4.34762 4.52183 4.72047 4.84472 4.86905 4.91427 4.94574 5.11691 5.15945 5.26002 5.36085 5.44714 5.51021 5.99860 6.38602 6.81404 6.82781 8.25637 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.025078 B = 0.006031 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.266691 B = 4641.503332 C = 5017.840992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.367 6.367 4 C 0.467 3.533 5 O -0.528 6.528 6 C -0.101 4.101 7 C 0.082 3.918 8 N -1.084 6.084 9 S 2.711 3.289 10 O -1.062 7.062 11 O -1.032 7.032 12 C -1.026 5.026 13 H 0.129 0.871 14 C 0.069 3.931 15 N -0.895 5.895 16 Si 0.991 3.009 17 H -0.242 1.242 18 H -0.268 1.268 19 H -0.257 1.257 20 C -0.137 4.137 21 C -0.166 4.166 22 H 0.102 0.898 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.110 0.890 28 H 0.158 0.842 29 H 0.411 0.589 30 H 0.297 0.703 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.354 -1.063 14.655 16.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 O -0.284 6.284 4 C 0.311 3.689 5 O -0.417 6.417 6 C -0.139 4.139 7 C -0.008 4.008 8 N -0.840 5.840 9 S 2.813 3.187 10 O -1.053 7.053 11 O -1.022 7.022 12 C -1.160 5.160 13 H 0.147 0.853 14 C -0.143 4.143 15 N -0.527 5.527 16 Si 0.809 3.191 17 H -0.165 1.165 18 H -0.192 1.192 19 H -0.181 1.181 20 C -0.176 4.176 21 C -0.204 4.204 22 H 0.121 0.879 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.128 0.872 28 H 0.176 0.824 29 H 0.244 0.756 30 H 0.107 0.893 31 H 0.148 0.852 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.697 -1.676 13.620 15.734 hybrid contribution 0.996 0.143 -0.471 1.112 sum -6.701 -1.533 13.149 14.837 Atomic orbital electron populations 1.21820 0.90024 1.04494 1.03709 1.23298 0.97437 0.79504 1.02218 1.86507 1.24616 1.33607 1.83682 1.23974 0.80478 0.93096 0.71357 1.90588 1.60356 1.44120 1.46647 1.21557 0.93147 0.91154 1.08056 1.20079 0.88606 1.02441 0.89689 1.54750 1.66401 1.35498 1.27361 1.00155 0.73188 0.75099 0.70215 1.93300 1.70472 1.70864 1.70625 1.93265 1.40318 1.86600 1.81970 1.30885 1.53276 1.26623 1.05232 0.85272 1.26041 0.92870 1.02809 0.92589 1.70052 1.38307 1.40800 1.03536 0.85089 0.78101 0.75628 0.80258 1.16468 1.19246 1.18076 1.23422 1.03676 0.99258 0.91247 1.23717 1.02862 0.92698 1.01147 0.87927 0.90480 0.91949 0.92846 0.90526 0.87162 0.82418 0.75566 0.89349 0.85177 0.87803 0.88295 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 10.29 71.98 0.74 -1.73 16 2 C 0.05 1.24 6.21 71.98 0.45 1.69 16 3 O -0.37 -11.66 10.22 -51.39 -0.53 -12.19 16 4 C 0.47 16.67 7.89 71.24 0.56 17.24 16 5 O -0.53 -21.14 14.98 21.94 0.33 -20.81 16 6 C -0.10 -3.26 5.36 29.85 0.16 -3.10 16 7 C 0.08 2.76 1.67 3.60 0.01 2.77 16 8 N -1.08 -46.12 4.82 -152.20 -0.73 -46.85 16 9 S 2.71 150.34 5.08 -56.49 -0.29 150.05 16 10 O -1.06 -67.29 18.02 -128.00 -2.31 -69.60 16 11 O -1.03 -61.68 15.44 -128.00 -1.98 -63.65 16 12 C -1.03 -55.33 9.39 67.74 0.64 -54.69 16 13 H 0.13 6.10 5.99 -2.91 -0.02 6.08 16 14 C 0.07 3.81 5.46 84.66 0.46 4.27 16 15 N -0.90 -53.55 13.02 21.45 0.28 -53.27 16 16 Si 0.99 40.46 29.54 68.60 2.03 42.48 16 17 H -0.24 -9.00 7.11 99.48 0.71 -8.30 16 18 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 19 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 20 C -0.14 -3.23 10.16 30.62 0.31 -2.92 16 21 C -0.17 -4.45 9.62 30.62 0.29 -4.16 16 22 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 1.76 8.09 -2.39 -0.02 1.75 16 27 H 0.11 4.31 6.37 -2.39 -0.02 4.30 16 28 H 0.16 3.34 8.11 -2.39 -0.02 3.32 16 29 H 0.41 16.42 8.96 -96.75 -0.87 15.56 16 30 H 0.30 15.93 8.31 -92.71 -0.77 15.16 16 31 H 0.13 2.20 8.14 -2.38 -0.02 2.19 16 32 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.10 2.92 6.62 -2.39 -0.02 2.90 16 34 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -81.18 307.93 0.69 -80.49 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: 0.26 Total: 33.98 kcal Atomic # 6 Polarization: -44.25 SS G_CDS: 3.62 Total: -40.63 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -0.45 Total: -100.13 kcal Atomic # 8 Polarization: -161.77 SS G_CDS: -4.48 Total: -166.25 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.48 kcal Atomic # 16 Polarization: 150.34 SS G_CDS: -0.29 Total: 150.05 kcal Total: -81.18 0.69 -80.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193008219.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.447 kcal (2) G-P(sol) polarization free energy of solvation -81.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds