Wall clock time and date at job start Mon Mar 30 2020 01:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.46815 * 2 1 4 4 C 1.34236 * 117.00156 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99512 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00189 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.46984 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.47398 * 54.99888 * 7 6 4 9 9 C 1.50699 * 109.47083 * 174.99834 * 7 6 4 10 10 H 1.08000 * 119.99792 * 359.97438 * 9 7 6 11 11 C 1.37878 * 119.99902 * 179.97438 * 9 7 6 12 12 N 1.31515 * 120.00126 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99745 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47256 * 90.00491 * 13 11 9 15 15 H 1.48506 * 109.46930 * 210.00332 * 13 11 9 16 16 H 1.48499 * 109.47104 * 330.00193 * 13 11 9 17 17 N 1.46499 * 109.46840 * 294.99562 * 7 6 4 18 18 C 1.46175 * 134.57935 * 300.00342 * 17 7 6 19 19 C 1.52737 * 90.93441 * 216.39296 * 18 17 7 20 20 S 1.65397 * 134.57535 * 119.64383 * 17 7 6 21 21 O 1.42100 * 109.01046 * 259.90136 * 20 17 7 22 22 O 1.42101 * 109.01038 * 37.98863 * 20 17 7 23 23 H 1.09002 * 109.46807 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47324 * 299.99705 * 1 2 3 25 25 H 1.09001 * 109.47347 * 60.00369 * 1 2 3 26 26 H 1.08997 * 109.47324 * 240.00295 * 2 1 3 27 27 H 1.09001 * 109.47347 * 119.99631 * 2 1 3 28 28 H 1.08990 * 109.47311 * 60.00248 * 6 4 3 29 29 H 1.09001 * 109.47069 * 300.00013 * 6 4 3 30 30 H 0.96999 * 120.00073 * 179.97438 * 12 11 9 31 31 H 1.09002 * 112.99900 * 331.94734 * 18 17 7 32 32 H 1.09000 * 113.00248 * 100.83871 * 18 17 7 33 33 H 1.08998 * 114.29139 * 80.48416 * 19 18 17 34 34 H 1.09001 * 114.28742 * 213.40495 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9376 0.0012 7 6 5.4485 2.8575 0.0010 8 1 5.7805 2.2502 -0.8411 9 6 6.0242 4.2448 -0.1222 10 1 5.3661 5.0981 -0.1938 11 6 7.3910 4.4245 -0.1436 12 7 8.1924 3.3853 -0.0570 13 14 8.1046 6.1442 -0.2957 14 1 8.2997 6.7207 1.0588 15 1 9.4112 6.0776 -0.9983 16 1 7.1701 7.0013 -1.0686 17 7 5.9056 2.2486 1.2526 18 6 5.7745 2.5904 2.6678 19 6 7.1855 2.0773 2.9481 20 16 6.7722 0.8927 1.6352 21 8 5.8745 -0.1310 2.0416 22 8 7.7989 0.7118 0.6695 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.5844 3.4694 0.8911 29 1 3.5849 3.4699 -0.8888 30 1 9.1540 3.5118 -0.0724 31 1 5.6691 3.6616 2.8391 32 1 5.0025 2.0124 3.1758 33 1 7.9777 2.7799 2.6898 34 1 7.3114 1.6269 3.9327 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250348795.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:52 Heat of formation + Delta-G solvation = -134.680858 kcal Electronic energy + Delta-G solvation = -21036.080167 eV Core-core repulsion = 17676.399388 eV Total energy + Delta-G solvation = -3359.680780 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.37762 -38.73661 -37.79501 -37.43370 -36.38913 -35.07266 -33.31321 -32.43690 -29.09971 -27.57884 -24.58936 -23.80153 -22.96345 -21.45463 -19.41437 -18.97909 -18.21684 -17.94647 -17.51174 -17.17854 -16.78583 -16.73682 -16.27154 -15.48901 -15.11846 -14.50715 -14.36052 -14.19921 -13.74637 -13.59278 -13.52234 -12.94931 -12.78765 -12.75062 -12.70083 -12.62915 -12.51690 -12.47849 -12.43518 -12.04208 -11.72512 -11.46683 -11.29135 -11.10153 -10.95441 -10.48550 -9.16689 -7.89525 -6.15138 -0.16181 1.35846 1.49901 1.55103 1.62228 1.82566 1.85802 2.53719 3.10746 3.37784 3.59750 3.90020 3.98340 4.02163 4.09940 4.15682 4.37901 4.40094 4.56473 4.59942 4.67613 4.86521 4.94717 5.00050 5.08565 5.17193 5.25805 5.55017 5.68972 5.90630 6.27182 6.58674 6.91850 7.00950 7.57134 9.09370 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.019674 B = 0.007662 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.827273 B = 3653.336877 C = 4583.755261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.049 3.951 3 O -0.363 6.363 4 C 0.457 3.543 5 O -0.538 6.538 6 C -0.112 4.112 7 C 0.328 3.672 8 H 0.013 0.987 9 C -0.539 4.539 10 H 0.073 0.927 11 C 0.036 3.964 12 N -0.872 5.872 13 Si 0.947 3.053 14 H -0.276 1.276 15 H -0.298 1.298 16 H -0.268 1.268 17 N -0.957 5.957 18 C 0.086 3.914 19 C -0.558 4.558 20 S 2.548 3.452 21 O -0.994 6.994 22 O -0.976 6.976 23 H 0.098 0.902 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.259 0.741 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.137 0.863 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.289 -0.769 5.630 11.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.025 4.025 3 O -0.280 6.280 4 C 0.302 3.698 5 O -0.427 6.427 6 C -0.152 4.152 7 C 0.226 3.774 8 H 0.031 0.969 9 C -0.580 4.580 10 H 0.092 0.908 11 C -0.169 4.169 12 N -0.508 5.508 13 Si 0.774 3.226 14 H -0.201 1.201 15 H -0.225 1.225 16 H -0.192 1.192 17 N -0.799 5.799 18 C -0.041 4.041 19 C -0.691 4.691 20 S 2.647 3.353 21 O -0.983 6.983 22 O -0.966 6.966 23 H 0.117 0.883 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.068 0.932 31 H 0.136 0.864 32 H 0.112 0.888 33 H 0.155 0.845 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.782 -2.257 5.006 11.218 hybrid contribution 0.751 1.155 0.128 1.384 sum -9.032 -1.102 5.134 10.447 Atomic orbital electron populations 1.21788 0.89701 1.04299 1.03858 1.23230 0.97490 0.79939 1.01818 1.86514 1.24292 1.33073 1.84146 1.24615 0.80327 0.93754 0.71078 1.90657 1.61217 1.44532 1.46335 1.22109 0.97859 0.88656 1.06526 1.17729 0.86047 0.93032 0.80577 0.96901 1.21499 0.91961 0.92521 1.51993 0.90847 1.25718 0.97865 0.99149 0.94165 1.70251 1.03521 1.30145 1.46851 0.85765 0.77410 0.81404 0.78056 1.20126 1.22465 1.19205 1.58391 1.73508 1.39470 1.08556 1.22098 0.93055 1.06638 0.82353 1.30885 1.04616 1.16659 1.16942 1.07139 0.75598 0.74837 0.77678 1.93584 1.62860 1.58390 1.83459 1.93521 1.58147 1.87751 1.57221 0.88291 0.91049 0.90973 0.92162 0.92429 0.86410 0.86085 0.93157 0.86428 0.88830 0.84461 0.83352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 10.29 71.98 0.74 -1.79 16 2 C 0.05 1.36 6.19 71.98 0.45 1.80 16 3 O -0.36 -11.92 10.22 -51.47 -0.53 -12.45 16 4 C 0.46 17.86 7.82 71.24 0.56 18.41 16 5 O -0.54 -25.25 13.64 26.22 0.36 -24.89 16 6 C -0.11 -4.14 5.41 29.85 0.16 -3.97 16 7 C 0.33 15.27 2.34 44.25 0.10 15.37 16 8 H 0.01 0.72 7.96 -2.39 -0.02 0.71 16 9 C -0.54 -25.84 8.73 25.60 0.22 -25.62 16 10 H 0.07 3.28 7.74 -2.91 -0.02 3.26 16 11 C 0.04 1.81 5.39 84.65 0.46 2.26 16 12 N -0.87 -47.64 11.40 21.45 0.24 -47.39 16 13 Si 0.95 40.02 29.54 68.60 2.03 42.05 16 14 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 15 H -0.30 -13.07 7.11 99.48 0.71 -12.36 16 16 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 17 N -0.96 -42.16 1.75 -636.29 -1.12 -43.28 16 18 C 0.09 2.97 8.01 86.35 0.69 3.66 16 19 C -0.56 -18.93 8.72 71.89 0.63 -18.30 16 20 S 2.55 114.25 7.18 -56.49 -0.41 113.85 16 21 O -0.99 -46.93 16.87 -122.72 -2.07 -49.00 16 22 O -0.98 -52.89 16.87 -128.14 -2.16 -55.05 16 23 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.72 8.13 -2.39 -0.02 1.70 16 27 H 0.06 1.71 8.13 -2.39 -0.02 1.69 16 28 H 0.12 3.79 8.14 -2.39 -0.02 3.78 16 29 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 30 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 31 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 32 H 0.09 2.84 7.95 -2.39 -0.02 2.82 16 33 H 0.14 5.14 8.14 -2.39 -0.02 5.12 16 34 H 0.15 3.63 8.14 -2.39 -0.02 3.61 16 Total: -1.00 -71.73 305.06 1.45 -70.28 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 1.10 Total: 14.06 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 4.01 Total: -8.17 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -0.87 Total: -90.67 kcal Atomic # 8 Polarization: -137.00 SS G_CDS: -4.40 Total: -141.40 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Atomic # 16 Polarization: 114.25 SS G_CDS: -0.41 Total: 113.85 kcal Total: -71.73 1.45 -70.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250348795.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.396 kcal (2) G-P(sol) polarization free energy of solvation -71.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds