Wall clock time and date at job start Mon Mar 30 2020 01:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.46946 * 180.02562 * 11 10 9 13 13 O 1.42098 * 110.54122 * 291.62548 * 12 11 10 14 14 O 1.42102 * 110.54223 * 68.37613 * 12 11 10 15 15 N 1.65600 * 104.45074 * 180.02562 * 12 11 10 16 16 C 1.46503 * 120.00062 * 64.99734 * 15 12 11 17 17 H 1.09007 * 110.32718 * 25.78727 * 16 15 12 18 18 C 1.54485 * 110.36849 * 148.14609 * 16 15 12 19 19 C 1.54572 * 102.14531 * 103.49247 * 18 16 15 20 20 O 1.45830 * 104.44544 * 26.85235 * 19 18 16 21 21 C 1.34071 * 109.90425 * 329.39096 * 20 19 18 22 22 O 1.20820 * 125.09593 * 200.83201 * 21 20 19 23 23 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 25 25 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 26 26 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 27 27 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 29 29 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 30 30 H 0.96993 * 120.00181 * 245.00479 * 15 12 11 31 31 H 1.09005 * 110.86630 * 221.65340 * 18 16 15 32 32 H 1.09002 * 110.87099 * 345.33170 * 18 16 15 33 33 H 1.08996 * 110.44092 * 268.10355 * 19 18 16 34 34 H 1.09005 * 110.54639 * 145.64385 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 16 2.6589 -6.3660 -0.0019 13 8 3.3547 -6.4264 -1.2394 14 8 3.3565 -6.4262 1.2346 15 7 1.7085 -7.7221 -0.0019 16 6 0.8485 -8.0140 -1.1515 17 1 1.2542 -7.5562 -2.0537 18 6 0.7017 -9.5403 -1.3394 19 6 -0.7147 -9.8023 -0.7787 20 8 -1.4214 -8.5413 -0.9719 21 6 -0.5583 -7.5182 -0.8961 22 8 -0.8587 -6.3721 -0.6596 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8878 27 1 2.8712 -3.6040 -0.8921 28 1 0.8543 -5.0449 0.8894 29 1 0.8525 -5.0447 -0.8905 30 1 1.7211 -8.3231 0.7593 31 1 0.7575 -9.8088 -2.3944 32 1 1.4536 -10.0769 -0.7607 33 1 -0.6644 -10.0521 0.2810 34 1 -1.2043 -10.6020 -1.3345 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261848760.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:46 Heat of formation + Delta-G solvation = -161.326104 kcal Electronic energy + Delta-G solvation = -19898.479600 eV Core-core repulsion = 16537.643396 eV Total energy + Delta-G solvation = -3360.836204 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.37115 -37.79339 -37.01234 -35.94285 -35.68060 -34.57998 -32.11485 -31.35767 -27.73524 -27.58173 -23.69705 -22.99726 -21.61809 -20.66302 -19.55231 -17.95921 -17.86936 -17.12395 -16.56009 -16.51265 -15.84701 -15.68907 -15.04243 -14.68522 -14.43201 -14.27840 -14.02918 -13.28643 -12.56699 -12.50183 -12.23503 -12.22102 -12.03133 -11.89745 -11.75943 -11.70818 -11.46302 -11.15825 -11.02030 -10.84411 -10.77504 -10.34127 -9.86700 -9.74045 -9.29007 -9.04062 -8.33607 -5.98179 -4.01649 0.35394 1.64183 2.68099 2.88031 3.36215 3.39989 3.42926 3.44404 3.66270 3.86339 4.11618 4.25432 4.37477 4.47683 4.68856 4.90081 4.95143 5.20442 5.27564 5.31625 5.37675 5.44661 6.01801 6.28549 6.34592 6.55884 6.56832 6.95614 7.14968 7.67141 7.77575 8.00321 8.40038 9.04643 9.62382 11.12863 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.027231 B = 0.004419 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.974858 B = 6335.112663 C = 7097.731770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.032 3.968 10 C -0.104 4.104 11 C -0.597 4.597 12 S 2.591 3.409 13 O -0.959 6.959 14 O -0.958 6.958 15 N -1.106 6.106 16 C 0.088 3.912 17 H 0.140 0.860 18 C -0.159 4.159 19 C 0.051 3.949 20 O -0.342 6.342 21 C 0.460 3.540 22 O -0.422 6.422 23 H 0.262 0.738 24 H 0.022 0.978 25 H 0.021 0.979 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.131 0.869 29 H 0.137 0.863 30 H 0.419 0.581 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.509 -23.846 -2.225 23.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.006 4.006 10 C -0.144 4.144 11 C -0.731 4.731 12 S 2.688 3.312 13 O -0.949 6.949 14 O -0.948 6.948 15 N -0.863 5.863 16 C -0.023 4.023 17 H 0.158 0.842 18 C -0.198 4.198 19 C -0.023 4.023 20 O -0.258 6.258 21 C 0.295 3.705 22 O -0.302 6.302 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.039 0.961 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.149 0.851 29 H 0.155 0.845 30 H 0.253 0.747 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.106 0.894 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.086 -23.081 -2.304 23.196 hybrid contribution -0.238 0.755 0.350 0.866 sum -0.325 -22.326 -1.953 22.414 Atomic orbital electron populations 1.69968 1.06065 1.26786 1.50456 1.25023 0.94867 0.99288 0.95189 0.86623 0.79552 0.82942 0.78688 1.20160 1.21276 1.20175 1.21225 0.93149 0.90958 1.51186 0.92479 1.19042 0.93465 0.90175 0.97954 1.21509 0.99315 0.91847 1.01730 1.30567 1.15435 1.14507 1.12543 1.05736 0.75728 0.75351 0.74371 1.93568 1.70290 1.85606 1.45473 1.93589 1.70569 1.85694 1.44969 1.55800 1.60340 1.43714 1.26480 1.22076 0.89658 0.98440 0.92100 0.84233 1.23243 0.97945 0.93670 1.04894 1.24206 0.91301 0.84063 1.02744 1.87089 1.38031 1.17296 1.83372 1.23754 0.87694 0.85493 0.73571 1.90853 1.82513 1.16364 1.40456 0.92885 0.95972 0.96062 0.91731 0.91664 0.85110 0.84456 0.74703 0.87557 0.87301 0.89395 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.40 13.29 55.43 0.74 -26.66 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.53 -15.28 9.11 -34.44 -0.31 -15.60 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.85 4.97 -27.88 -0.14 0.72 16 10 C -0.10 -2.22 5.16 -26.73 -0.14 -2.35 16 11 C -0.60 -10.15 4.86 37.16 0.18 -9.97 16 12 S 2.59 37.63 5.45 -107.50 -0.59 37.05 16 13 O -0.96 -16.12 17.42 -57.54 -1.00 -17.12 16 14 O -0.96 -16.44 18.08 -57.54 -1.04 -17.48 16 15 N -1.11 -10.71 5.38 -4.94 -0.03 -10.73 16 16 C 0.09 0.75 3.53 -67.99 -0.24 0.51 16 17 H 0.14 1.17 7.55 -51.93 -0.39 0.78 16 18 C -0.16 -0.66 6.89 -25.13 -0.17 -0.83 16 19 C 0.05 0.22 7.90 37.98 0.30 0.52 16 20 O -0.34 -3.28 11.05 -38.49 -0.43 -3.71 16 21 C 0.46 5.27 8.21 36.32 0.30 5.57 16 22 O -0.42 -6.69 14.93 -18.40 -0.27 -6.96 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.13 2.13 8.13 -51.92 -0.42 1.71 16 29 H 0.14 2.29 6.40 -51.92 -0.33 1.96 16 30 H 0.42 2.89 8.75 -34.47 -0.30 2.59 16 31 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.11 0.28 7.97 -51.93 -0.41 -0.13 16 33 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 304.39 15.07 4.59 4.59 Total: -1.00 -38.30 304.39 -7.74 -46.04 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -4.36 Total: -2.20 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -0.32 Total: -19.84 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.71 Total: -37.40 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -2.74 Total: -45.27 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 37.63 SS G_CDS: -0.59 Total: 37.05 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -38.30 -7.74 -46.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261848760.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.291 kcal (2) G-P(sol) polarization free energy of solvation -38.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds