Wall clock time and date at job start Mon Mar 30 2020 01:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.46946 * 180.02562 * 11 10 9 13 13 O 1.42098 * 110.54122 * 291.62548 * 12 11 10 14 14 O 1.42102 * 110.54223 * 68.37613 * 12 11 10 15 15 N 1.65600 * 104.45074 * 180.02562 * 12 11 10 16 16 C 1.46503 * 120.00062 * 64.99734 * 15 12 11 17 17 H 1.09007 * 110.32718 * 25.78727 * 16 15 12 18 18 C 1.54485 * 110.36849 * 148.14609 * 16 15 12 19 19 C 1.54572 * 102.14531 * 103.49247 * 18 16 15 20 20 O 1.45830 * 104.44544 * 26.85235 * 19 18 16 21 21 C 1.34071 * 109.90425 * 329.39096 * 20 19 18 22 22 O 1.20820 * 125.09593 * 200.83201 * 21 20 19 23 23 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 25 25 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 26 26 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 27 27 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 29 29 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 30 30 H 0.96993 * 120.00181 * 245.00479 * 15 12 11 31 31 H 1.09005 * 110.86630 * 221.65340 * 18 16 15 32 32 H 1.09002 * 110.87099 * 345.33170 * 18 16 15 33 33 H 1.08996 * 110.44092 * 268.10355 * 19 18 16 34 34 H 1.09005 * 110.54639 * 145.64385 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 16 2.6589 -6.3660 -0.0019 13 8 3.3547 -6.4264 -1.2394 14 8 3.3565 -6.4262 1.2346 15 7 1.7085 -7.7221 -0.0019 16 6 0.8485 -8.0140 -1.1515 17 1 1.2542 -7.5562 -2.0537 18 6 0.7017 -9.5403 -1.3394 19 6 -0.7147 -9.8023 -0.7787 20 8 -1.4214 -8.5413 -0.9719 21 6 -0.5583 -7.5182 -0.8961 22 8 -0.8587 -6.3721 -0.6596 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8878 27 1 2.8712 -3.6040 -0.8921 28 1 0.8543 -5.0449 0.8894 29 1 0.8525 -5.0447 -0.8905 30 1 1.7211 -8.3231 0.7593 31 1 0.7575 -9.8088 -2.3944 32 1 1.4536 -10.0769 -0.7607 33 1 -0.6644 -10.0521 0.2810 34 1 -1.2043 -10.6020 -1.3345 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261848760.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:45 Heat of formation + Delta-G solvation = -191.941182 kcal Electronic energy + Delta-G solvation = -19899.807170 eV Core-core repulsion = 16537.643396 eV Total energy + Delta-G solvation = -3362.163774 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.09970 -38.69510 -38.30765 -37.19291 -36.55289 -36.46826 -34.17603 -31.93771 -29.68364 -28.24529 -25.65162 -23.51272 -22.46456 -22.39705 -20.70709 -19.01181 -18.74191 -18.54874 -17.96766 -17.30431 -17.17134 -16.96771 -16.49338 -16.00228 -15.70846 -15.23298 -14.89392 -14.47948 -14.10584 -14.04362 -13.55647 -13.32544 -13.25570 -13.15437 -12.98932 -12.83788 -12.73871 -12.66773 -12.45744 -12.40726 -12.07241 -11.75994 -11.50653 -11.38902 -11.07598 -10.58802 -10.48735 -8.22641 -6.35624 -0.86753 0.77135 1.38898 1.42958 1.50913 1.66401 2.22469 2.39242 2.59160 2.81520 3.09973 3.12316 3.17099 3.71769 3.75007 3.88218 3.99024 4.08762 4.36471 4.42570 4.63222 4.71745 4.94926 5.00303 5.01023 5.05769 5.43321 5.59179 5.65014 5.77975 5.89419 6.16941 6.30434 6.80441 7.34000 8.89098 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.027231 B = 0.004419 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.974858 B = 6335.112663 C = 7097.731770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.065 0.935 9 C 0.032 3.968 10 C -0.103 4.103 11 C -0.610 4.610 12 S 2.636 3.364 13 O -0.975 6.975 14 O -0.980 6.980 15 N -1.087 6.087 16 C 0.081 3.919 17 H 0.143 0.857 18 C -0.144 4.144 19 C 0.043 3.957 20 O -0.360 6.360 21 C 0.459 3.541 22 O -0.482 6.482 23 H 0.265 0.735 24 H -0.005 1.005 25 H -0.005 1.005 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.435 0.565 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.105 0.895 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.810 -25.979 -2.508 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.591 4.591 8 H 0.083 0.917 9 C -0.006 4.006 10 C -0.143 4.143 11 C -0.740 4.740 12 S 2.730 3.270 13 O -0.965 6.965 14 O -0.970 6.970 15 N -0.849 5.849 16 C -0.029 4.029 17 H 0.160 0.840 18 C -0.183 4.183 19 C -0.030 4.030 20 O -0.276 6.276 21 C 0.297 3.703 22 O -0.366 6.366 23 H 0.073 0.927 24 H 0.014 0.986 25 H 0.013 0.987 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.149 0.851 29 H 0.154 0.846 30 H 0.274 0.726 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.123 0.877 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.230 -25.241 -2.576 25.402 hybrid contribution -0.746 1.240 0.418 1.506 sum 0.484 -24.001 -2.157 24.103 Atomic orbital electron populations 1.70114 1.07937 1.27993 1.51249 1.26046 0.95817 1.03595 0.94430 0.85436 0.78235 0.77647 0.79350 1.18952 1.20661 1.18999 1.21719 0.93832 0.92271 1.51298 0.91680 1.18924 0.94001 0.92323 0.95360 1.21309 0.98440 0.92226 1.02276 1.30622 1.16273 1.14494 1.12636 1.04193 0.74689 0.74863 0.73248 1.93547 1.70679 1.85922 1.46369 1.93555 1.71272 1.86089 1.46063 1.55291 1.59886 1.41893 1.27870 1.22364 0.87346 1.01936 0.91270 0.83956 1.23368 0.98312 0.89655 1.06971 1.24701 0.91275 0.82346 1.04634 1.87059 1.39206 1.18706 1.82617 1.24258 0.89018 0.85061 0.71977 1.90823 1.83662 1.18844 1.43240 0.92656 0.98641 0.98657 0.91183 0.91049 0.85107 0.84638 0.72611 0.85185 0.84770 0.87685 0.83640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.92 13.29 21.45 0.28 -58.64 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 3 Si 0.97 45.59 29.54 68.60 2.03 47.62 16 4 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.55 -32.94 9.11 25.60 0.23 -32.71 16 8 H 0.06 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.03 1.81 4.97 29.85 0.15 1.95 16 10 C -0.10 -4.54 5.16 30.59 0.16 -4.38 16 11 C -0.61 -21.45 4.86 71.98 0.35 -21.10 16 12 S 2.64 74.03 5.45 -56.49 -0.31 73.72 16 13 O -0.98 -31.37 17.42 -127.65 -2.22 -33.60 16 14 O -0.98 -32.36 18.08 -127.65 -2.31 -34.67 16 15 N -1.09 -18.77 5.38 -169.55 -0.91 -19.69 16 16 C 0.08 1.21 3.53 44.95 0.16 1.37 16 17 H 0.14 2.14 7.55 -2.38 -0.02 2.12 16 18 C -0.14 -0.59 6.89 31.63 0.22 -0.37 16 19 C 0.04 0.21 7.90 72.52 0.57 0.79 16 20 O -0.36 -6.43 11.05 -50.22 -0.56 -6.99 16 21 C 0.46 10.38 8.21 71.44 0.59 10.96 16 22 O -0.48 -16.05 14.93 21.66 0.32 -15.72 16 23 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 24 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 25 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 26 H 0.07 2.93 8.14 -2.39 -0.02 2.92 16 27 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 28 H 0.13 4.51 8.13 -2.39 -0.02 4.49 16 29 H 0.14 4.80 6.40 -2.39 -0.02 4.78 16 30 H 0.44 4.72 8.75 -96.75 -0.85 3.88 16 31 H 0.13 0.03 8.14 -2.38 -0.02 0.01 16 32 H 0.13 -0.03 7.97 -2.39 -0.02 -0.05 16 33 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.15 -0.13 8.14 -2.38 -0.02 -0.15 16 Total: -1.00 -86.09 304.39 -0.51 -86.60 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 0.27 Total: 4.44 kcal Atomic # 6 Polarization: -45.97 SS G_CDS: 2.89 Total: -43.08 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -0.63 Total: -78.32 kcal Atomic # 8 Polarization: -86.21 SS G_CDS: -4.76 Total: -90.98 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: 74.03 SS G_CDS: -0.31 Total: 73.72 kcal Total: -86.09 -0.51 -86.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261848760.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.343 kcal (2) G-P(sol) polarization free energy of solvation -86.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds