Wall clock time and date at job start Mon Mar 30 2020 01:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86802 * 119.99608 * 2 1 4 4 H 1.48499 * 109.47304 * 239.99783 * 3 2 1 5 5 H 1.48493 * 109.47382 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46942 * 120.00339 * 3 2 1 7 7 C 1.40047 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99867 * 359.97438 * 7 2 1 10 10 O 1.21688 * 119.99815 * 359.97438 * 9 7 2 11 11 N 1.34776 * 119.99946 * 179.97438 * 9 7 2 12 12 C 1.46495 * 120.00145 * 179.97438 * 11 9 7 13 13 C 1.50701 * 109.47471 * 180.02562 * 12 11 9 14 14 C 1.39868 * 126.03767 * 90.02410 * 13 12 11 15 15 N 1.30844 * 108.19764 * 179.97438 * 14 13 12 16 16 N 1.40078 * 108.20890 * 0.02562 * 15 14 13 17 17 C 1.46495 * 126.04021 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.47183 * 304.97729 * 17 16 15 19 19 F 1.39894 * 109.47307 * 59.99508 * 18 17 16 20 20 F 1.39898 * 109.47180 * 179.97438 * 18 17 16 21 21 F 1.39902 * 109.46834 * 299.99633 * 18 17 16 22 22 C 1.34957 * 107.92650 * 0.02562 * 16 15 14 23 23 H 0.97004 * 119.99836 * 359.97438 * 1 2 3 24 24 H 0.97003 * 119.99938 * 0.02562 * 11 9 7 25 25 H 1.09002 * 109.47021 * 60.00274 * 12 11 9 26 26 H 1.09005 * 109.47026 * 300.00351 * 12 11 9 27 27 H 1.07995 * 125.89923 * 0.21784 * 14 13 12 28 28 H 1.09001 * 109.47177 * 64.97492 * 17 16 15 29 29 H 1.08999 * 109.47527 * 184.97205 * 17 16 15 30 30 H 1.07995 * 126.12756 * 180.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6966 -1.2124 5 1 1.2756 2.7465 0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9490 -3.6477 -0.0016 12 6 1.2166 -4.9164 -0.0010 13 6 2.1959 -6.0618 -0.0018 14 6 2.7311 -6.6876 1.1288 15 7 3.5399 -7.6346 0.7273 16 7 3.5452 -7.6409 -0.6734 17 6 4.3183 -8.5452 -1.5283 18 6 5.7993 -8.4588 -1.1544 19 9 5.9646 -8.8280 0.1848 20 9 6.5375 -9.3228 -1.9703 21 9 6.2502 -7.1469 -1.3354 22 6 2.7134 -6.6660 -1.0964 23 1 -0.4850 0.8401 0.0004 24 1 2.9190 -3.6476 -0.0020 25 1 0.5889 -4.9740 -0.8903 26 1 0.5909 -4.9743 0.8897 27 1 2.5114 -6.4355 2.1557 28 1 3.9670 -9.5674 -1.3873 29 1 4.1895 -8.2575 -2.5717 30 1 2.4981 -6.4143 -2.1243 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324122850.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:14 Heat of formation + Delta-G solvation = -138.793252 kcal Electronic energy + Delta-G solvation = -20797.868262 eV Core-core repulsion = 16793.001215 eV Total energy + Delta-G solvation = -4004.867047 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.16851 -48.71962 -48.63991 -42.30453 -39.23689 -35.80019 -34.73595 -34.23527 -31.55256 -30.19223 -28.43768 -26.06698 -24.72895 -22.12673 -21.85311 -21.31367 -19.70621 -19.59370 -19.29953 -18.63067 -17.56799 -17.29512 -16.28894 -15.99191 -15.82173 -15.56339 -15.45976 -15.43133 -15.08809 -15.00997 -14.81688 -14.77704 -14.39906 -14.03415 -13.81280 -13.57155 -13.14767 -13.04737 -12.87591 -12.63620 -12.54827 -12.03264 -11.64789 -10.88160 -10.55410 -10.02016 -9.47542 -9.38310 -8.23865 -6.80467 0.65656 1.17686 1.42654 1.45968 1.57019 1.66180 1.67047 2.29248 2.52238 2.62696 2.89627 3.11117 3.43762 3.60694 3.68341 3.89109 4.04892 4.06652 4.27293 4.48126 4.70336 4.91840 5.20158 5.35991 5.50991 5.83655 5.93462 6.28885 6.35619 6.54410 6.91584 7.61857 8.54722 8.72458 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.028677 B = 0.003615 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.154676 B = 7744.274659 C = 8321.712845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.031 3.969 3 Si 0.995 3.005 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.539 3.461 10 O -0.632 6.632 11 N -0.750 5.750 12 C 0.216 3.784 13 C -0.252 4.252 14 C 0.069 3.931 15 N -0.312 5.312 16 N -0.388 5.388 17 C 0.097 3.903 18 C 0.441 3.559 19 F -0.183 7.183 20 F -0.174 7.174 21 F -0.192 7.192 22 C 0.097 3.903 23 H 0.274 0.726 24 H 0.391 0.609 25 H 0.047 0.953 26 H 0.040 0.960 27 H 0.195 0.805 28 H 0.155 0.845 29 H 0.182 0.818 30 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.573 -17.717 -5.521 21.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.184 4.184 3 Si 0.815 3.185 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.612 4.612 8 H 0.102 0.898 9 C 0.343 3.657 10 O -0.520 6.520 11 N -0.404 5.404 12 C 0.091 3.909 13 C -0.264 4.264 14 C -0.119 4.119 15 N -0.131 5.131 16 N -0.170 5.170 17 C -0.025 4.025 18 C 0.386 3.614 19 F -0.165 7.165 20 F -0.155 7.155 21 F -0.174 7.174 22 C -0.049 4.049 23 H 0.084 0.916 24 H 0.224 0.776 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.212 0.788 28 H 0.173 0.827 29 H 0.199 0.801 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 11.428 -18.703 -5.245 22.537 hybrid contribution 0.238 1.346 0.063 1.369 sum 11.666 -17.356 -5.181 21.545 Atomic orbital electron populations 1.70177 1.09420 1.28911 1.36601 1.26914 0.95487 1.04769 0.91257 0.85114 0.78234 0.75024 0.80174 1.17874 1.19878 1.18112 1.21407 0.94614 0.90314 1.54861 0.89801 1.18543 0.86787 0.84301 0.76043 1.90552 1.16109 1.88006 1.57284 1.45933 1.09102 1.04472 1.80907 1.18963 0.91542 0.80472 0.99970 1.20096 1.08911 1.04195 0.93165 1.24157 0.93933 0.92947 1.00848 1.77479 1.23434 1.23307 0.88919 1.48278 1.36014 1.28010 1.04740 1.23196 0.82926 0.98852 0.97567 1.21001 0.91915 0.73483 0.75041 1.93244 1.96468 1.91226 1.35517 1.93224 1.79691 1.70014 1.72569 1.93218 1.91267 1.37885 1.94983 1.22835 0.91856 0.88832 1.01340 0.91603 0.77562 0.93458 0.94122 0.78827 0.82708 0.80071 0.77138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.27 11.83 21.84 0.26 -50.02 16 2 C 0.03 1.72 5.50 85.30 0.47 2.19 16 3 Si 0.99 41.01 29.56 68.60 2.03 43.04 16 4 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 6 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.58 -32.67 9.54 24.83 0.24 -32.43 16 8 H 0.08 4.30 7.85 -2.91 -0.02 4.27 16 9 C 0.54 31.14 7.75 86.36 0.67 31.81 16 10 O -0.63 -42.08 15.02 -4.31 -0.06 -42.15 16 11 N -0.75 -33.30 5.54 -471.14 -2.61 -35.91 16 12 C 0.22 8.05 6.15 85.63 0.53 8.58 16 13 C -0.25 -7.09 5.47 -20.14 -0.11 -7.20 16 14 C 0.07 1.86 11.96 85.23 1.02 2.88 16 15 N -0.31 -8.22 11.51 -57.02 -0.66 -8.88 16 16 N -0.39 -7.74 3.60 -348.07 -1.25 -8.99 16 17 C 0.10 1.03 6.51 86.38 0.56 1.60 16 18 C 0.44 7.38 3.28 71.98 0.24 7.61 16 19 F -0.18 -4.15 16.28 44.97 0.73 -3.41 16 20 F -0.17 -2.57 17.32 44.97 0.78 -1.79 16 21 F -0.19 -4.18 17.24 44.97 0.78 -3.41 16 22 C 0.10 2.04 11.36 83.54 0.95 2.99 16 23 H 0.27 15.21 8.29 -92.70 -0.77 14.44 16 24 H 0.39 15.56 8.44 -92.71 -0.78 14.78 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.19 4.71 8.06 -2.91 -0.02 4.69 16 28 H 0.16 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.18 0.39 8.07 -2.39 -0.02 0.37 16 30 H 0.21 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -81.31 289.92 4.97 -76.34 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.42 Total: 17.14 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 4.56 Total: 18.03 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -4.26 Total: -103.79 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -0.06 Total: -42.15 kcal Atomic # 9 Polarization: -10.89 SS G_CDS: 2.29 Total: -8.61 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -81.31 4.97 -76.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324122850.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.452 kcal (2) G-P(sol) polarization free energy of solvation -81.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds