Wall clock time and date at job start Mon Mar 30 2020 01:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99702 * 2 1 4 4 H 1.48498 * 109.46925 * 269.99955 * 3 2 1 5 5 H 1.48498 * 109.47083 * 30.00053 * 3 2 1 6 6 H 1.48503 * 109.46982 * 150.00231 * 3 2 1 7 7 C 1.37872 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99786 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00213 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46896 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46891 * 180.02562 * 10 9 7 12 12 O 1.45198 * 109.47170 * 179.97438 * 11 10 9 13 13 C 1.34231 * 116.99809 * 179.97438 * 12 11 10 14 14 O 1.20824 * 120.00235 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99958 * 179.97438 * 13 12 11 16 16 S 1.81402 * 115.54980 * 45.70853 * 15 13 12 17 17 N 1.65600 * 104.44883 * 54.97812 * 16 15 13 18 18 O 1.42104 * 110.54255 * 166.59993 * 16 15 13 19 19 O 1.42100 * 110.54338 * 303.35319 * 16 15 13 20 20 C 1.53000 * 117.49823 * 260.04379 * 15 13 12 21 21 C 1.52996 * 117.50103 * 191.38223 * 15 13 12 22 22 H 0.96998 * 120.00226 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47002 * 60.00441 * 9 7 2 24 24 H 1.09001 * 109.46799 * 300.00267 * 9 7 2 25 25 H 1.08999 * 109.47151 * 60.00268 * 10 9 7 26 26 H 1.09001 * 109.47399 * 299.99636 * 10 9 7 27 27 H 1.09001 * 109.47006 * 299.99944 * 11 10 9 28 28 H 1.09002 * 109.47273 * 59.99464 * 11 10 9 29 29 H 0.97005 * 119.99790 * 4.09059 * 17 16 15 30 30 H 0.96995 * 119.99993 * 184.08755 * 17 16 15 31 31 H 1.09005 * 117.49702 * 359.97438 * 20 15 13 32 32 H 1.08995 * 117.50050 * 145.02121 * 20 15 13 33 33 H 1.09004 * 117.50196 * 214.97915 * 21 15 13 34 34 H 1.09000 * 117.49563 * 359.97438 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 8 2.4241 -6.0907 -0.0018 13 6 1.9110 -7.3310 -0.0019 14 8 0.7132 -7.4894 -0.0010 15 6 2.8291 -8.5262 -0.0031 16 16 4.2130 -8.4509 1.1673 17 7 3.4977 -8.1795 2.6360 18 8 4.8204 -9.7283 1.3041 19 8 4.9965 -7.2877 0.9389 20 6 3.0723 -9.2288 -1.3403 21 6 2.2042 -9.8968 -0.2709 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5568 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6043 0.8895 26 1 2.8721 -3.6043 -0.8905 27 1 0.8536 -5.0451 0.8886 28 1 0.8541 -5.0446 -0.8913 29 1 2.5305 -8.1597 2.7082 30 1 4.0458 -8.0405 3.4241 31 1 2.5679 -8.8269 -2.2190 32 1 4.0636 -9.6462 -1.5165 33 1 2.6248 -10.7534 0.2558 34 1 1.1290 -9.9341 -0.4459 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329615661.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:36 Heat of formation + Delta-G solvation = -167.819860 kcal Electronic energy + Delta-G solvation = -19575.940598 eV Core-core repulsion = 16214.822804 eV Total energy + Delta-G solvation = -3361.117795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.88184 -38.85946 -38.14274 -37.33216 -37.15632 -35.97985 -34.15345 -33.71222 -29.32779 -26.97105 -24.90290 -23.80802 -22.45251 -22.19613 -20.47337 -19.83238 -18.70889 -18.49281 -18.06771 -17.75191 -17.53275 -16.77551 -16.49904 -16.45376 -15.67083 -15.34573 -14.76167 -14.19361 -13.93093 -13.86296 -13.38160 -13.32015 -13.20123 -13.15851 -12.85739 -12.72886 -12.56099 -12.53059 -12.32826 -12.15580 -11.97072 -11.68734 -11.48434 -11.47028 -11.40645 -11.25870 -10.57687 -8.22757 -6.33844 -1.00795 0.72614 1.17225 1.41547 1.42354 1.54086 1.76452 2.06995 2.40401 2.43046 2.85189 3.11318 3.27870 3.46732 3.74441 3.95218 3.96336 4.22400 4.37097 4.43908 4.69410 4.76229 4.80976 4.90265 5.03396 5.12072 5.25297 5.48102 5.62221 5.79187 6.18215 6.19615 6.38725 6.81315 7.35676 8.89301 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.031187 B = 0.003690 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.598565 B = 7587.045222 C = 8063.792860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.099 4.099 11 C 0.076 3.924 12 O -0.351 6.351 13 C 0.508 3.492 14 O -0.508 6.508 15 C -0.684 4.684 16 S 2.680 3.320 17 N -1.241 6.241 18 O -0.963 6.963 19 O -0.977 6.977 20 C -0.090 4.090 21 C -0.077 4.077 22 H 0.265 0.735 23 H 0.000 1.000 24 H 0.001 0.999 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.422 0.578 30 H 0.430 0.570 31 H 0.129 0.871 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.886 -22.870 1.219 23.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.137 4.137 11 C 0.003 3.997 12 O -0.267 6.267 13 C 0.350 3.650 14 O -0.396 6.396 15 C -0.772 4.772 16 S 2.767 3.233 17 N -0.919 5.919 18 O -0.952 6.952 19 O -0.966 6.966 20 C -0.128 4.128 21 C -0.114 4.114 22 H 0.074 0.926 23 H 0.018 0.982 24 H 0.019 0.981 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.250 0.750 30 H 0.263 0.737 31 H 0.147 0.853 32 H 0.169 0.831 33 H 0.174 0.826 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.396 -22.873 0.865 23.766 hybrid contribution -1.003 1.520 0.280 1.842 sum 5.393 -21.353 1.145 22.053 Atomic orbital electron populations 1.70084 1.07750 1.27945 1.51408 1.25952 0.95776 1.03324 0.94522 0.85421 0.78647 0.78288 0.78546 1.19724 1.20624 1.18803 1.21619 0.93678 0.92016 1.51003 0.92013 1.18928 0.94139 0.92146 0.95742 1.21507 0.98898 0.90677 1.02578 1.23319 0.90667 0.82936 1.02777 1.86574 1.42199 1.15018 1.82894 1.21527 0.87111 0.83447 0.72915 1.90663 1.16730 1.86669 1.45577 1.31547 1.22392 0.99709 1.23562 1.02752 0.72873 0.73783 0.73868 1.52788 1.19582 1.92718 1.26794 1.93608 1.72878 1.43821 1.84911 1.93625 1.66671 1.51300 1.84987 1.23452 1.05271 0.95720 0.88390 1.23463 1.02897 0.86278 0.98780 0.92627 0.98174 0.98053 0.91667 0.91740 0.90629 0.91035 0.74994 0.73705 0.85300 0.83136 0.82552 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -31.08 9.11 25.60 0.23 -30.85 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.03 1.45 4.97 29.85 0.15 1.60 16 10 C -0.10 -4.18 5.53 30.59 0.17 -4.01 16 11 C 0.08 2.74 5.47 71.98 0.39 3.13 16 12 O -0.35 -11.42 9.88 -51.29 -0.51 -11.92 16 13 C 0.51 13.69 7.37 71.24 0.53 14.22 16 14 O -0.51 -15.45 16.07 21.97 0.35 -15.10 16 15 C -0.68 -12.52 2.63 -11.54 -0.03 -12.55 16 16 S 2.68 54.21 5.89 -56.49 -0.33 53.88 16 17 N -1.24 -19.27 9.39 37.02 0.35 -18.92 16 18 O -0.96 -20.92 17.66 -127.65 -2.25 -23.18 16 19 O -0.98 -29.13 17.87 -127.48 -2.28 -31.41 16 20 C -0.09 -1.06 10.00 30.62 0.31 -0.76 16 21 C -0.08 -0.83 9.68 30.62 0.30 -0.54 16 22 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 23 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 24 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 25 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 26 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.08 2.63 8.13 -2.39 -0.02 2.61 16 28 H 0.07 2.54 8.13 -2.39 -0.02 2.52 16 29 H 0.42 5.25 8.84 -96.74 -0.85 4.40 16 30 H 0.43 5.38 8.96 -96.75 -0.87 4.51 16 31 H 0.13 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.16 0.93 7.89 -2.38 -0.02 0.91 16 34 H 0.13 1.44 7.72 -2.39 -0.02 1.42 16 Total: -1.00 -77.39 315.72 -0.44 -77.84 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -0.59 Total: 7.76 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 2.50 Total: -29.17 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: 0.63 Total: -74.92 kcal Atomic # 8 Polarization: -76.92 SS G_CDS: -4.69 Total: -81.61 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 54.21 SS G_CDS: -0.33 Total: 53.88 kcal Total: -77.39 -0.44 -77.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329615661.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.984 kcal (2) G-P(sol) polarization free energy of solvation -77.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds