Wall clock time and date at job start Mon Mar 30 2020 01:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47104 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47457 * 300.00415 * 3 2 1 6 6 H 1.48496 * 109.46986 * 60.00777 * 3 2 1 7 7 C 1.37881 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99939 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00021 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46613 * 60.00696 * 9 7 2 11 11 N 1.46496 * 109.47016 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00037 * 205.00057 * 11 9 7 13 13 O 1.21282 * 120.00088 * 0.02562 * 12 11 9 14 14 C 1.50706 * 119.99882 * 180.02562 * 12 11 9 15 15 C 1.50700 * 109.46934 * 180.02562 * 14 12 11 16 16 C 1.39868 * 125.90051 * 124.99637 * 15 14 12 17 17 C 1.35315 * 107.92327 * 180.02562 * 16 15 14 18 18 N 1.34948 * 107.74869 * 0.02562 * 17 16 15 19 19 H 0.96999 * 126.04129 * 180.02562 * 18 17 16 20 20 N 1.30843 * 125.89988 * 304.69127 * 15 14 12 21 21 C 1.52997 * 109.47466 * 300.00592 * 9 7 2 22 22 F 1.39905 * 109.47157 * 59.99756 * 21 9 7 23 23 F 1.39900 * 109.47010 * 300.00147 * 21 9 7 24 24 F 1.39897 * 109.47422 * 179.97438 * 21 9 7 25 25 H 0.97001 * 120.00022 * 359.97438 * 1 2 3 26 26 H 0.97005 * 120.00318 * 25.00910 * 11 9 7 27 27 H 1.08998 * 109.47325 * 299.99535 * 14 12 11 28 28 H 1.08993 * 109.47336 * 60.00295 * 14 12 11 29 29 H 1.08001 * 126.04186 * 0.02871 * 16 15 14 30 30 H 1.08003 * 126.12924 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5567 -0.8904 11 7 2.2030 -3.6126 -0.0005 12 6 1.8369 -4.8123 -0.4938 13 8 0.7195 -4.9698 -0.9382 14 6 2.8161 -5.9579 -0.4933 15 6 2.1640 -7.1763 -1.0944 16 6 2.6551 -7.9225 -2.1706 17 6 1.7861 -8.9321 -2.4083 18 7 0.7803 -8.8281 -1.5146 19 1 0.0133 -9.4181 -1.4474 20 7 1.0435 -7.7220 -0.6962 21 6 0.3718 -2.5805 1.2489 22 9 -0.5373 -1.5171 1.2494 23 9 1.1764 -2.5066 2.3910 24 9 -0.3281 -3.7918 1.2486 25 1 -0.4850 0.8401 0.0004 26 1 3.0969 -3.4866 0.3546 27 1 3.6923 -5.6873 -1.0824 28 1 3.1198 -6.1758 0.5306 29 1 3.5669 -7.7275 -2.7156 30 1 1.8800 -9.6857 -3.1763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332934544.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:32 Heat of formation + Delta-G solvation = -98.957490 kcal Electronic energy + Delta-G solvation = -22008.475177 eV Core-core repulsion = 18005.335539 eV Total energy + Delta-G solvation = -4003.139639 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.27798 -45.93086 -45.54770 -41.03644 -38.73109 -34.61268 -32.78243 -32.45188 -29.81984 -29.25365 -27.35260 -24.51363 -22.07741 -21.28677 -20.14699 -19.29665 -18.03475 -17.39108 -16.76685 -16.58198 -16.30380 -15.66580 -14.95509 -14.68164 -14.35010 -14.11104 -13.45889 -13.32362 -12.90982 -12.84285 -12.60818 -12.42660 -12.32682 -12.22428 -11.92501 -11.82297 -11.72147 -11.13985 -10.83977 -10.71366 -10.44704 -10.37064 -9.60574 -9.36842 -9.03931 -8.69634 -8.61653 -8.18246 -6.20538 -4.44228 2.03787 2.85249 3.00217 3.19571 3.26896 3.30509 3.33622 3.96627 4.24886 4.63095 4.72278 4.87997 4.96826 5.29989 5.46098 5.60408 5.76091 5.83747 5.91122 5.94155 6.07004 6.28475 6.70071 7.00559 7.25431 7.37452 7.51872 7.66645 7.84739 8.39987 8.54279 8.99254 9.23787 10.71178 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.031057 B = 0.005132 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.340319 B = 5454.299376 C = 5886.895004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.064 3.936 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.551 4.551 8 H 0.078 0.922 9 C 0.246 3.754 10 H 0.084 0.916 11 N -0.714 5.714 12 C 0.506 3.494 13 O -0.521 6.521 14 C -0.062 4.062 15 C 0.091 3.909 16 C -0.267 4.267 17 C 0.048 3.952 18 N -0.481 5.481 19 H 0.437 0.563 20 N -0.257 5.257 21 C 0.416 3.584 22 F -0.138 7.138 23 F -0.210 7.210 24 F -0.216 7.216 25 H 0.267 0.733 26 H 0.398 0.602 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.146 0.854 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.528 -12.575 -2.666 14.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.145 4.145 3 Si 0.742 3.258 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.588 4.588 8 H 0.096 0.904 9 C 0.140 3.860 10 H 0.101 0.899 11 N -0.365 5.365 12 C 0.290 3.710 13 O -0.396 6.396 14 C -0.104 4.104 15 C -0.077 4.077 16 C -0.296 4.296 17 C -0.099 4.099 18 N -0.189 5.189 19 H 0.280 0.720 20 N -0.080 5.080 21 C 0.360 3.640 22 F -0.119 7.119 23 F -0.192 7.192 24 F -0.198 7.198 25 H 0.078 0.922 26 H 0.232 0.768 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.164 0.836 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.547 -12.497 -2.159 13.472 hybrid contribution 0.891 0.496 -0.161 1.033 sum 5.439 -12.000 -2.320 13.378 Atomic orbital electron populations 1.70424 1.05882 1.27184 1.43859 1.25101 0.95140 1.00151 0.94108 0.86161 0.79808 0.82023 0.77837 1.19377 1.20619 1.20610 1.20927 0.93808 0.88123 1.55897 0.90369 1.19684 0.88789 0.85912 0.91617 0.89871 1.46033 1.17160 1.10581 1.62707 1.20298 0.88539 0.83611 0.78524 1.90736 1.21004 1.82613 1.45228 1.20071 0.98007 0.89288 1.03037 1.21624 0.93316 0.96588 0.96216 1.21382 1.04589 0.99886 1.03764 1.22494 0.90091 1.00944 0.96360 1.46415 1.21072 1.25005 1.26391 0.72027 1.77504 1.16470 0.98191 1.15796 1.23133 0.80897 0.72822 0.87137 1.93399 1.68444 1.53874 1.96211 1.92982 1.74415 1.96196 1.55594 1.93084 1.81421 1.48324 1.96961 0.92230 0.76795 0.87128 0.87541 0.83574 0.80996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.34 9.50 55.43 0.53 -22.82 16 2 C 0.06 1.67 5.20 -17.82 -0.09 1.57 16 3 Si 0.92 20.14 29.54 -169.99 -5.02 15.12 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.55 -14.07 8.46 -34.44 -0.29 -14.36 16 8 H 0.08 1.87 7.74 -52.49 -0.41 1.47 16 9 C 0.25 6.18 2.21 -69.09 -0.15 6.03 16 10 H 0.08 2.36 7.58 -51.93 -0.39 1.97 16 11 N -0.71 -14.55 4.98 -54.93 -0.27 -14.82 16 12 C 0.51 10.11 7.35 -10.98 -0.08 10.03 16 13 O -0.52 -12.77 14.15 5.56 0.08 -12.69 16 14 C -0.06 -0.89 6.28 -29.03 -0.18 -1.08 16 15 C 0.09 1.43 6.01 -82.40 -0.50 0.93 16 16 C -0.27 -3.32 10.72 -40.01 -0.43 -3.75 16 17 C 0.05 0.51 11.99 -17.22 -0.21 0.30 16 18 N -0.48 -6.04 7.36 30.45 0.22 -5.82 16 19 H 0.44 3.96 8.96 -182.61 -1.64 2.32 16 20 N -0.26 -4.46 12.06 33.67 0.41 -4.06 16 21 C 0.42 10.95 2.81 37.16 0.10 11.05 16 22 F -0.14 -3.92 12.91 2.25 0.03 -3.89 16 23 F -0.21 -5.27 16.94 2.25 0.04 -5.24 16 24 F -0.22 -5.73 15.68 2.25 0.04 -5.70 16 25 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.40 6.77 8.54 -40.82 -0.35 6.42 16 27 H 0.11 1.19 8.12 -51.93 -0.42 0.77 16 28 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 278.98 15.07 4.20 4.20 Total: -1.00 -34.55 278.98 -5.19 -39.73 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -3.61 Total: 5.23 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: -1.83 Total: 10.73 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.88 Total: -47.51 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 9 Polarization: -14.93 SS G_CDS: 0.10 Total: -14.82 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -34.55 -5.19 -39.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332934544.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.223 kcal (2) G-P(sol) polarization free energy of solvation -34.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds