Wall clock time and date at job start Mon Mar 30 2020 01:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47104 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47457 * 300.00415 * 3 2 1 6 6 H 1.48496 * 109.46986 * 60.00777 * 3 2 1 7 7 C 1.37881 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99939 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00021 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46613 * 60.00696 * 9 7 2 11 11 N 1.46496 * 109.47016 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00037 * 205.00057 * 11 9 7 13 13 O 1.21282 * 120.00088 * 0.02562 * 12 11 9 14 14 C 1.50706 * 119.99882 * 180.02562 * 12 11 9 15 15 C 1.50700 * 109.46934 * 180.02562 * 14 12 11 16 16 C 1.39868 * 125.90051 * 124.99637 * 15 14 12 17 17 C 1.35315 * 107.92327 * 180.02562 * 16 15 14 18 18 N 1.34948 * 107.74869 * 0.02562 * 17 16 15 19 19 H 0.96999 * 126.04129 * 180.02562 * 18 17 16 20 20 N 1.30843 * 125.89988 * 304.69127 * 15 14 12 21 21 C 1.52997 * 109.47466 * 300.00592 * 9 7 2 22 22 F 1.39905 * 109.47157 * 59.99756 * 21 9 7 23 23 F 1.39900 * 109.47010 * 300.00147 * 21 9 7 24 24 F 1.39897 * 109.47422 * 179.97438 * 21 9 7 25 25 H 0.97001 * 120.00022 * 359.97438 * 1 2 3 26 26 H 0.97005 * 120.00318 * 25.00910 * 11 9 7 27 27 H 1.08998 * 109.47325 * 299.99535 * 14 12 11 28 28 H 1.08993 * 109.47336 * 60.00295 * 14 12 11 29 29 H 1.08001 * 126.04186 * 0.02871 * 16 15 14 30 30 H 1.08003 * 126.12924 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5567 -0.8904 11 7 2.2030 -3.6126 -0.0005 12 6 1.8369 -4.8123 -0.4938 13 8 0.7195 -4.9698 -0.9382 14 6 2.8161 -5.9579 -0.4933 15 6 2.1640 -7.1763 -1.0944 16 6 2.6551 -7.9225 -2.1706 17 6 1.7861 -8.9321 -2.4083 18 7 0.7803 -8.8281 -1.5146 19 1 0.0133 -9.4181 -1.4474 20 7 1.0435 -7.7220 -0.6962 21 6 0.3718 -2.5805 1.2489 22 9 -0.5373 -1.5171 1.2494 23 9 1.1764 -2.5066 2.3910 24 9 -0.3281 -3.7918 1.2486 25 1 -0.4850 0.8401 0.0004 26 1 3.0969 -3.4866 0.3546 27 1 3.6923 -5.6873 -1.0824 28 1 3.1198 -6.1758 0.5306 29 1 3.5669 -7.7275 -2.7156 30 1 1.8800 -9.6857 -3.1763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332934544.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:32 Heat of formation + Delta-G solvation = -125.126854 kcal Electronic energy + Delta-G solvation = -22009.609966 eV Core-core repulsion = 18005.335539 eV Total energy + Delta-G solvation = -4004.274427 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.40631 -48.04304 -47.71901 -42.02680 -40.34169 -36.45837 -34.44286 -33.82791 -30.85686 -30.75179 -28.82617 -26.56108 -23.79439 -22.44503 -21.66203 -20.60885 -19.24114 -18.96123 -18.81022 -18.64643 -18.13582 -17.39258 -16.81653 -16.14173 -15.82016 -15.33209 -14.98199 -14.89766 -14.49357 -14.44708 -14.33081 -14.31218 -14.23542 -14.01587 -13.85676 -13.65379 -13.00366 -12.95579 -12.64564 -12.62750 -12.17556 -11.52963 -11.47187 -10.81638 -10.68209 -10.28962 -9.99286 -9.54586 -8.19469 -6.50243 1.10037 1.47752 1.48883 1.62243 1.77057 1.82569 2.14061 2.33664 2.49319 2.59707 2.96139 3.68399 3.78954 3.86789 4.00061 4.14561 4.29823 4.43449 4.59989 4.83469 4.94073 4.95977 5.18477 5.47383 5.58907 5.67779 5.76793 6.55874 6.59155 6.81159 6.86043 7.19713 7.47377 8.73742 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.031057 B = 0.005132 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.340319 B = 5454.299376 C = 5886.895004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.011 3.989 3 Si 0.985 3.015 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.557 4.557 8 H 0.097 0.903 9 C 0.253 3.747 10 H 0.042 0.958 11 N -0.707 5.707 12 C 0.501 3.499 13 O -0.572 6.572 14 C -0.051 4.051 15 C 0.067 3.933 16 C -0.284 4.284 17 C 0.066 3.934 18 N -0.480 5.480 19 H 0.447 0.553 20 N -0.324 5.324 21 C 0.412 3.588 22 F -0.153 7.153 23 F -0.202 7.202 24 F -0.221 7.221 25 H 0.267 0.733 26 H 0.416 0.584 27 H 0.153 0.847 28 H 0.128 0.872 29 H 0.174 0.826 30 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.097 -13.283 -3.365 16.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.194 4.194 3 Si 0.809 3.191 4 H -0.175 1.175 5 H -0.204 1.204 6 H -0.209 1.209 7 C -0.594 4.594 8 H 0.115 0.885 9 C 0.145 3.855 10 H 0.060 0.940 11 N -0.359 5.359 12 C 0.288 3.712 13 O -0.450 6.450 14 C -0.092 4.092 15 C -0.100 4.100 16 C -0.313 4.313 17 C -0.081 4.081 18 N -0.189 5.189 19 H 0.293 0.707 20 N -0.148 5.148 21 C 0.356 3.644 22 F -0.134 7.134 23 F -0.184 7.184 24 F -0.203 7.203 25 H 0.077 0.923 26 H 0.253 0.747 27 H 0.170 0.830 28 H 0.146 0.854 29 H 0.191 0.809 30 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 7.163 -13.232 -2.843 15.313 hybrid contribution 0.041 0.605 0.028 0.607 sum 7.204 -12.628 -2.816 14.809 Atomic orbital electron populations 1.70563 1.07672 1.28005 1.45055 1.26065 0.95874 1.03917 0.93512 0.85079 0.79297 0.77272 0.77472 1.17463 1.20449 1.20887 1.21298 0.94678 0.88173 1.55262 0.88539 1.19259 0.89022 0.87865 0.89327 0.94041 1.45902 1.17178 1.09846 1.62934 1.21336 0.88859 0.84275 0.76757 1.90710 1.23621 1.83407 1.47263 1.20155 0.97297 0.86441 1.05306 1.21996 0.93438 0.97122 0.97431 1.21797 1.06130 1.00062 1.03287 1.23308 0.88197 1.00874 0.95728 1.46464 1.22037 1.24188 1.26219 0.70729 1.77390 1.18240 1.00610 1.18604 1.23391 0.80879 0.72241 0.87922 1.93371 1.69085 1.54602 1.96338 1.92980 1.74066 1.96145 1.55239 1.93071 1.81648 1.48560 1.97027 0.92306 0.74653 0.82960 0.85369 0.80886 0.76077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.72 9.50 21.45 0.20 -49.52 16 2 C 0.01 0.58 5.20 84.65 0.44 1.02 16 3 Si 0.99 40.65 29.54 68.60 2.03 42.67 16 4 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.56 -28.20 8.46 25.60 0.22 -27.98 16 8 H 0.10 4.42 7.74 -2.91 -0.02 4.40 16 9 C 0.25 12.92 2.21 44.24 0.10 13.01 16 10 H 0.04 2.47 7.58 -2.39 -0.02 2.46 16 11 N -0.71 -28.42 4.98 -446.10 -2.22 -30.65 16 12 C 0.50 19.91 7.35 87.66 0.64 20.55 16 13 O -0.57 -28.85 14.15 -3.03 -0.04 -28.90 16 14 C -0.05 -1.37 6.28 29.10 0.18 -1.19 16 15 C 0.07 2.02 6.01 43.10 0.26 2.28 16 16 C -0.28 -6.28 10.72 21.99 0.24 -6.04 16 17 C 0.07 1.20 11.99 83.54 1.00 2.20 16 18 N -0.48 -11.47 7.36 -57.59 -0.42 -11.90 16 19 H 0.45 7.72 8.96 -213.33 -1.91 5.81 16 20 N -0.32 -11.25 12.06 -47.38 -0.57 -11.82 16 21 C 0.41 22.09 2.81 71.98 0.20 22.29 16 22 F -0.15 -8.91 12.91 44.97 0.58 -8.33 16 23 F -0.20 -10.15 16.94 44.97 0.76 -9.39 16 24 F -0.22 -12.09 15.68 44.97 0.71 -11.39 16 25 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 26 H 0.42 13.41 8.54 -92.70 -0.79 12.62 16 27 H 0.15 2.74 8.12 -2.39 -0.02 2.72 16 28 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.22 1.56 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -77.82 278.98 2.82 -75.00 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -1.48 Total: 18.07 kcal Atomic # 6 Polarization: 22.87 SS G_CDS: 3.28 Total: 26.15 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -3.01 Total: -103.88 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.04 Total: -28.90 kcal Atomic # 9 Polarization: -31.16 SS G_CDS: 2.05 Total: -29.11 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.67 kcal Total: -77.82 2.82 -75.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332934544.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.127 kcal (2) G-P(sol) polarization free energy of solvation -77.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds