Wall clock time and date at job start Mon Mar 30 2020 01:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99845 * 2 1 4 4 H 1.48494 * 109.47195 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47151 * 300.00567 * 3 2 1 6 6 H 1.48503 * 109.46944 * 60.00557 * 3 2 1 7 7 C 1.37875 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99804 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00190 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47150 * 299.99851 * 9 7 2 11 11 N 1.46498 * 109.47114 * 179.97438 * 9 7 2 12 12 C 1.34777 * 119.99828 * 154.72036 * 11 9 7 13 13 O 1.21283 * 120.00222 * 0.28168 * 12 11 9 14 14 C 1.50703 * 120.00290 * 180.27728 * 12 11 9 15 15 C 1.50701 * 109.47355 * 180.02562 * 14 12 11 16 16 C 1.39867 * 125.89457 * 124.99912 * 15 14 12 17 17 C 1.35314 * 107.91704 * 180.02562 * 16 15 14 18 18 N 1.34942 * 107.74746 * 359.97438 * 17 16 15 19 19 H 0.97001 * 126.04006 * 180.02562 * 18 17 16 20 20 N 1.30833 * 125.89741 * 304.69610 * 15 14 12 21 21 C 1.52997 * 109.47247 * 59.99565 * 9 7 2 22 22 F 1.39901 * 109.47352 * 180.02562 * 21 9 7 23 23 F 1.39894 * 109.47202 * 300.00327 * 21 9 7 24 24 F 1.39903 * 109.47248 * 60.00297 * 21 9 7 25 25 H 0.96995 * 120.00431 * 359.97438 * 1 2 3 26 26 H 0.97001 * 120.00384 * 335.00482 * 11 9 7 27 27 H 1.08998 * 109.46954 * 300.00581 * 14 12 11 28 28 H 1.09002 * 109.46946 * 59.99717 * 14 12 11 29 29 H 1.08000 * 126.04304 * 0.02562 * 16 15 14 30 30 H 1.08001 * 126.12942 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6241 -2.5575 0.8880 11 7 2.2031 -3.6126 -0.0027 12 6 1.8388 -4.8111 0.4947 13 8 0.7212 -4.9693 0.9384 14 6 2.8201 -5.9549 0.4994 15 6 2.1694 -7.1726 1.1033 16 6 2.0665 -8.4310 0.5014 17 6 1.4176 -9.2513 1.3599 18 7 1.1210 -8.5376 2.4660 19 1 0.6562 -8.8679 3.2507 20 7 1.6081 -7.2369 2.2834 21 6 0.3719 -2.5794 -1.2512 22 9 -0.3280 -3.7907 -1.2521 23 9 -0.5372 -1.5161 -1.2508 24 9 1.1766 -2.5045 -2.3933 25 1 -0.4850 0.8400 0.0004 26 1 3.0970 -3.4862 -0.3575 27 1 3.1254 -6.1759 -0.5233 28 1 3.6953 -5.6803 1.0884 29 1 2.4390 -8.7003 -0.4759 30 1 1.1797 -10.2910 1.1902 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332934547.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:34 Heat of formation + Delta-G solvation = -99.117634 kcal Electronic energy + Delta-G solvation = -21999.051931 eV Core-core repulsion = 17995.905348 eV Total energy + Delta-G solvation = -4003.146583 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.30181 -45.95709 -45.56708 -41.03912 -38.73186 -34.61367 -32.78381 -32.45215 -29.82217 -29.25605 -27.35522 -24.52240 -22.07659 -21.29914 -20.14963 -19.29836 -18.03803 -17.39458 -16.78435 -16.59027 -16.34984 -15.63089 -14.96284 -14.72459 -14.40883 -13.86953 -13.54515 -13.45602 -12.89737 -12.88303 -12.62685 -12.37247 -12.31133 -12.21323 -11.94104 -11.86523 -11.76005 -11.13621 -10.83979 -10.72065 -10.45498 -10.36917 -9.60831 -9.36963 -9.04081 -8.69526 -8.61627 -8.18413 -6.20535 -4.44141 2.03427 2.85173 2.99832 3.19844 3.26953 3.30673 3.34451 3.95756 4.24664 4.61760 4.71964 4.88143 4.96540 5.30437 5.45964 5.59501 5.75969 5.83474 5.90953 5.93581 6.06540 6.27086 6.69989 7.00710 7.25250 7.37164 7.52090 7.66802 7.83969 8.39930 8.54428 8.99235 9.23894 10.71250 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.031167 B = 0.005077 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.170887 B = 5513.494970 C = 5831.715321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.064 3.936 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.550 4.550 8 H 0.078 0.922 9 C 0.245 3.755 10 H 0.084 0.916 11 N -0.714 5.714 12 C 0.506 3.494 13 O -0.521 6.521 14 C -0.062 4.062 15 C 0.092 3.908 16 C -0.266 4.266 17 C 0.049 3.951 18 N -0.481 5.481 19 H 0.436 0.564 20 N -0.259 5.259 21 C 0.417 3.583 22 F -0.218 7.218 23 F -0.138 7.138 24 F -0.210 7.210 25 H 0.267 0.733 26 H 0.398 0.602 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.146 0.854 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.699 -13.291 0.272 14.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.145 4.145 3 Si 0.742 3.258 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.587 4.587 8 H 0.096 0.904 9 C 0.140 3.860 10 H 0.102 0.898 11 N -0.365 5.365 12 C 0.290 3.710 13 O -0.396 6.396 14 C -0.104 4.104 15 C -0.076 4.076 16 C -0.296 4.296 17 C -0.098 4.098 18 N -0.189 5.189 19 H 0.280 0.720 20 N -0.082 5.082 21 C 0.361 3.639 22 F -0.200 7.200 23 F -0.119 7.119 24 F -0.192 7.192 25 H 0.078 0.922 26 H 0.232 0.768 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.164 0.836 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.377 -12.647 1.622 13.481 hybrid contribution 0.505 0.166 -0.920 1.063 sum 4.882 -12.481 0.701 13.420 Atomic orbital electron populations 1.70418 1.05879 1.27197 1.43883 1.25098 0.95142 1.00152 0.94098 0.86161 0.79814 0.82018 0.77837 1.19378 1.20604 1.20613 1.20928 0.93815 0.88125 1.55854 0.90370 1.19690 0.88810 0.85929 0.91600 0.89819 1.46029 1.17191 1.10643 1.62610 1.20295 0.88632 0.83626 0.78411 1.90737 1.21146 1.82659 1.45035 1.20073 0.98120 0.89696 1.02519 1.21613 0.98470 0.94904 0.92628 1.21387 1.12040 0.93228 1.02945 1.22489 1.00106 0.98588 0.88652 1.46393 1.47541 1.08565 1.16379 0.72029 1.77457 1.15807 0.95801 1.19113 1.23150 0.80880 0.72759 0.87147 1.93071 1.81474 1.48456 1.96977 1.93399 1.68433 1.53844 1.96203 1.92983 1.74404 1.96186 1.55590 0.92225 0.76795 0.87235 0.87423 0.83587 0.80984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.36 9.50 55.43 0.53 -22.84 16 2 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 3 Si 0.92 20.21 29.54 -169.99 -5.02 15.19 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.55 -14.10 8.47 -34.44 -0.29 -14.39 16 8 H 0.08 1.88 7.74 -52.49 -0.41 1.48 16 9 C 0.25 6.17 2.21 -69.08 -0.15 6.02 16 10 H 0.08 2.39 7.57 -51.93 -0.39 1.99 16 11 N -0.71 -14.55 4.98 -54.93 -0.27 -14.82 16 12 C 0.51 10.12 7.36 -10.98 -0.08 10.04 16 13 O -0.52 -12.78 14.15 5.55 0.08 -12.70 16 14 C -0.06 -0.89 6.28 -29.03 -0.18 -1.08 16 15 C 0.09 1.45 6.01 -82.41 -0.50 0.95 16 16 C -0.27 -3.37 10.72 -40.01 -0.43 -3.80 16 17 C 0.05 0.52 11.99 -17.23 -0.21 0.31 16 18 N -0.48 -6.00 7.36 30.44 0.22 -5.78 16 19 H 0.44 3.90 8.96 -182.61 -1.64 2.26 16 20 N -0.26 -4.44 12.06 33.67 0.41 -4.03 16 21 C 0.42 10.85 2.81 37.16 0.10 10.96 16 22 F -0.22 -5.68 15.70 2.25 0.04 -5.64 16 23 F -0.14 -3.88 12.91 2.25 0.03 -3.85 16 24 F -0.21 -5.20 16.94 2.25 0.04 -5.16 16 25 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.40 6.77 8.54 -40.82 -0.35 6.42 16 27 H 0.11 1.22 8.12 -51.93 -0.42 0.80 16 28 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 30 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 279.01 15.07 4.20 4.20 Total: -1.00 -34.42 279.01 -5.19 -39.61 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -3.61 Total: 5.22 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -1.83 Total: 10.59 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.88 Total: -47.46 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.08 Total: -12.70 kcal Atomic # 9 Polarization: -14.75 SS G_CDS: 0.10 Total: -14.65 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -34.42 -5.19 -39.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332934547.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.511 kcal (2) G-P(sol) polarization free energy of solvation -34.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds