Wall clock time and date at job start Mon Mar 30 2020 01:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99845 * 2 1 4 4 H 1.48494 * 109.47195 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47151 * 300.00567 * 3 2 1 6 6 H 1.48503 * 109.46944 * 60.00557 * 3 2 1 7 7 C 1.37875 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99804 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00190 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47150 * 299.99851 * 9 7 2 11 11 N 1.46498 * 109.47114 * 179.97438 * 9 7 2 12 12 C 1.34777 * 119.99828 * 154.72036 * 11 9 7 13 13 O 1.21283 * 120.00222 * 0.28168 * 12 11 9 14 14 C 1.50703 * 120.00290 * 180.27728 * 12 11 9 15 15 C 1.50701 * 109.47355 * 180.02562 * 14 12 11 16 16 C 1.39867 * 125.89457 * 124.99912 * 15 14 12 17 17 C 1.35314 * 107.91704 * 180.02562 * 16 15 14 18 18 N 1.34942 * 107.74746 * 359.97438 * 17 16 15 19 19 H 0.97001 * 126.04006 * 180.02562 * 18 17 16 20 20 N 1.30833 * 125.89741 * 304.69610 * 15 14 12 21 21 C 1.52997 * 109.47247 * 59.99565 * 9 7 2 22 22 F 1.39901 * 109.47352 * 180.02562 * 21 9 7 23 23 F 1.39894 * 109.47202 * 300.00327 * 21 9 7 24 24 F 1.39903 * 109.47248 * 60.00297 * 21 9 7 25 25 H 0.96995 * 120.00431 * 359.97438 * 1 2 3 26 26 H 0.97001 * 120.00384 * 335.00482 * 11 9 7 27 27 H 1.08998 * 109.46954 * 300.00581 * 14 12 11 28 28 H 1.09002 * 109.46946 * 59.99717 * 14 12 11 29 29 H 1.08000 * 126.04304 * 0.02562 * 16 15 14 30 30 H 1.08001 * 126.12942 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6241 -2.5575 0.8880 11 7 2.2031 -3.6126 -0.0027 12 6 1.8388 -4.8111 0.4947 13 8 0.7212 -4.9693 0.9384 14 6 2.8201 -5.9549 0.4994 15 6 2.1694 -7.1726 1.1033 16 6 2.0665 -8.4310 0.5014 17 6 1.4176 -9.2513 1.3599 18 7 1.1210 -8.5376 2.4660 19 1 0.6562 -8.8679 3.2507 20 7 1.6081 -7.2369 2.2834 21 6 0.3719 -2.5794 -1.2512 22 9 -0.3280 -3.7907 -1.2521 23 9 -0.5372 -1.5161 -1.2508 24 9 1.1766 -2.5045 -2.3933 25 1 -0.4850 0.8400 0.0004 26 1 3.0970 -3.4862 -0.3575 27 1 3.1254 -6.1759 -0.5233 28 1 3.6953 -5.6803 1.0884 29 1 2.4390 -8.7003 -0.4759 30 1 1.1797 -10.2910 1.1902 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332934547.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:33 Heat of formation + Delta-G solvation = -125.109142 kcal Electronic energy + Delta-G solvation = -22000.179008 eV Core-core repulsion = 17995.905348 eV Total energy + Delta-G solvation = -4004.273659 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.40267 -48.03589 -47.71568 -42.03202 -40.34410 -36.46087 -34.44641 -33.83174 -30.85898 -30.75853 -28.82848 -26.56455 -23.79195 -22.45541 -21.66415 -20.61278 -19.23873 -18.96153 -18.81926 -18.63745 -18.15514 -17.37588 -16.81754 -16.14745 -15.85696 -15.20621 -14.97201 -14.95999 -14.60163 -14.45311 -14.33054 -14.31193 -14.22420 -14.00283 -13.81919 -13.58314 -13.16297 -12.87359 -12.66537 -12.60927 -12.18266 -11.53247 -11.49000 -10.81817 -10.68584 -10.29181 -9.99219 -9.55130 -8.19959 -6.50668 1.09287 1.47178 1.48086 1.61501 1.76041 1.83256 2.13761 2.32971 2.46790 2.60548 2.95744 3.68405 3.78722 3.87639 3.98723 4.13313 4.31837 4.42109 4.59918 4.83513 4.93611 4.95130 5.17663 5.46999 5.58761 5.67433 5.75828 6.55302 6.58719 6.80861 6.85183 7.19270 7.47128 8.73219 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.031167 B = 0.005077 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.170887 B = 5513.494970 C = 5831.715321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.012 3.988 3 Si 0.985 3.015 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.558 4.558 8 H 0.095 0.905 9 C 0.252 3.748 10 H 0.040 0.960 11 N -0.707 5.707 12 C 0.501 3.499 13 O -0.572 6.572 14 C -0.051 4.051 15 C 0.068 3.932 16 C -0.286 4.286 17 C 0.067 3.933 18 N -0.479 5.479 19 H 0.448 0.552 20 N -0.322 5.322 21 C 0.414 3.586 22 F -0.221 7.221 23 F -0.153 7.153 24 F -0.201 7.201 25 H 0.267 0.733 26 H 0.416 0.584 27 H 0.147 0.853 28 H 0.134 0.866 29 H 0.171 0.829 30 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.712 -14.420 -0.422 16.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.176 1.176 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.595 4.595 8 H 0.113 0.887 9 C 0.144 3.856 10 H 0.058 0.942 11 N -0.359 5.359 12 C 0.288 3.712 13 O -0.450 6.450 14 C -0.092 4.092 15 C -0.099 4.099 16 C -0.315 4.315 17 C -0.081 4.081 18 N -0.188 5.188 19 H 0.293 0.707 20 N -0.146 5.146 21 C 0.358 3.642 22 F -0.202 7.202 23 F -0.134 7.134 24 F -0.183 7.183 25 H 0.077 0.923 26 H 0.253 0.747 27 H 0.165 0.835 28 H 0.152 0.848 29 H 0.189 0.811 30 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 6.440 -13.799 0.925 15.256 hybrid contribution -0.177 0.398 -0.687 0.814 sum 6.263 -13.400 0.238 14.794 Atomic orbital electron populations 1.70557 1.07628 1.28017 1.45048 1.26052 0.95884 1.03877 0.93512 0.85089 0.79259 0.77324 0.77509 1.17571 1.20691 1.20547 1.21295 0.94646 0.88258 1.55305 0.88665 1.19250 0.89052 0.87836 0.89418 0.94237 1.45897 1.17217 1.09893 1.62847 1.21331 0.88957 0.84311 0.76616 1.90711 1.23812 1.83480 1.47012 1.20150 0.96888 0.86913 1.05246 1.21979 0.98802 0.96321 0.92824 1.21797 1.12944 0.92337 1.04437 1.23288 0.97605 1.00201 0.86970 1.46449 1.47213 1.07609 1.17567 0.70661 1.77348 1.18042 0.98535 1.20697 1.23294 0.80816 0.72254 0.87825 1.93061 1.81633 1.48524 1.97032 1.93369 1.69065 1.54629 1.96330 1.92985 1.74027 1.96136 1.55117 0.92287 0.74650 0.83495 0.84819 0.81112 0.76108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.75 9.50 21.45 0.20 -49.54 16 2 C 0.01 0.60 5.20 84.65 0.44 1.04 16 3 Si 0.98 40.89 29.54 68.60 2.03 42.92 16 4 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.56 -28.42 8.47 25.60 0.22 -28.20 16 8 H 0.10 4.41 7.74 -2.91 -0.02 4.39 16 9 C 0.25 12.88 2.21 44.24 0.10 12.98 16 10 H 0.04 2.38 7.57 -2.39 -0.02 2.36 16 11 N -0.71 -28.44 4.98 -446.09 -2.22 -30.66 16 12 C 0.50 19.92 7.36 87.66 0.65 20.57 16 13 O -0.57 -28.86 14.15 -3.04 -0.04 -28.91 16 14 C -0.05 -1.37 6.28 29.10 0.18 -1.19 16 15 C 0.07 2.05 6.01 43.10 0.26 2.30 16 16 C -0.29 -6.49 10.72 21.99 0.24 -6.25 16 17 C 0.07 1.22 11.99 83.54 1.00 2.22 16 18 N -0.48 -11.34 7.36 -57.59 -0.42 -11.77 16 19 H 0.45 7.55 8.96 -213.33 -1.91 5.64 16 20 N -0.32 -10.99 12.06 -47.39 -0.57 -11.56 16 21 C 0.41 21.89 2.81 71.98 0.20 22.09 16 22 F -0.22 -11.72 15.70 44.97 0.71 -11.01 16 23 F -0.15 -8.83 12.91 44.97 0.58 -8.24 16 24 F -0.20 -9.84 16.94 44.97 0.76 -9.08 16 25 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 26 H 0.42 13.42 8.54 -92.71 -0.79 12.63 16 27 H 0.15 2.79 8.12 -2.39 -0.02 2.77 16 28 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 30 H 0.22 1.63 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -77.27 279.01 2.82 -74.45 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -1.48 Total: 17.84 kcal Atomic # 6 Polarization: 22.29 SS G_CDS: 3.28 Total: 25.57 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -3.01 Total: -103.53 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.04 Total: -28.91 kcal Atomic # 9 Polarization: -30.39 SS G_CDS: 2.05 Total: -28.34 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -77.27 2.82 -74.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332934547.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.661 kcal (2) G-P(sol) polarization free energy of solvation -77.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds