Wall clock time and date at job start Mon Mar 30 2020 01:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47168 * 2 1 4 4 C 1.50707 * 109.46691 * 240.00394 * 2 1 3 5 5 H 1.08002 * 119.99794 * 239.99703 * 4 2 1 6 6 C 1.37876 * 119.99997 * 60.00047 * 4 2 1 7 7 N 1.31516 * 119.99976 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99824 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47195 * 89.99983 * 8 6 4 10 10 H 1.48499 * 109.47159 * 209.99893 * 8 6 4 11 11 H 1.48507 * 109.47229 * 330.00160 * 8 6 4 12 12 C 1.50695 * 109.47448 * 120.00595 * 2 1 3 13 13 O 1.21288 * 120.00231 * 120.26902 * 12 2 1 14 14 N 1.34784 * 119.99635 * 299.99856 * 12 2 1 15 15 C 1.40162 * 119.99632 * 179.97438 * 14 12 2 16 16 C 1.40403 * 125.97646 * 359.71947 * 15 14 12 17 17 C 1.35240 * 107.86966 * 179.82163 * 16 15 14 18 18 C 1.50691 * 126.07211 * 180.13421 * 17 16 15 19 19 F 1.39897 * 109.47438 * 180.32470 * 18 17 16 20 20 F 1.39907 * 109.47375 * 300.32578 * 18 17 16 21 21 F 1.39901 * 109.47366 * 60.32090 * 18 17 16 22 22 N 1.34971 * 107.85639 * 0.43397 * 17 16 15 23 23 H 0.97005 * 125.97103 * 179.75960 * 22 17 16 24 24 N 1.31220 * 125.96908 * 180.02562 * 15 14 12 25 25 H 1.09005 * 109.47504 * 59.99649 * 1 2 3 26 26 H 1.08997 * 109.47563 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47290 * 299.99459 * 1 2 3 28 28 H 0.96998 * 119.99718 * 180.02562 * 7 6 4 29 29 H 0.96999 * 120.00044 * 0.02562 * 14 12 2 30 30 H 1.08007 * 126.06437 * 359.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3222 -1.1193 -4.0081 9 1 1.3445 -2.1613 -4.4125 10 1 2.4869 -0.1400 -5.1121 11 1 3.6306 -1.7565 -3.7122 12 6 2.0323 -0.7105 1.2303 13 8 2.7337 -1.6937 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 2.1736 -0.9112 3.5989 16 6 2.9791 -2.0610 3.6162 17 6 3.2142 -2.3837 4.9083 18 6 4.0367 -3.5480 5.3966 19 9 4.0444 -3.5596 6.7955 20 9 3.4819 -4.7421 4.9234 21 9 5.3477 -3.4237 4.9241 22 7 2.5757 -1.4814 5.6829 23 1 2.5665 -1.4682 6.6528 24 7 1.9295 -0.5670 4.8413 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 0.7088 1.1616 -3.4843 29 1 1.1488 0.5384 2.5436 30 1 3.3479 -2.5921 2.7510 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333452800.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:37 Heat of formation + Delta-G solvation = -126.970953 kcal Electronic energy + Delta-G solvation = -21237.763851 eV Core-core repulsion = 17233.409457 eV Total energy + Delta-G solvation = -4004.354394 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.38961 -48.92193 -48.85383 -42.76837 -40.64458 -36.03380 -35.82970 -32.92507 -32.34053 -31.31166 -27.35795 -27.18140 -25.25049 -22.79978 -22.56393 -21.05890 -20.37234 -19.73753 -19.43794 -18.46537 -18.11352 -17.15450 -16.87556 -16.61579 -16.33877 -15.79277 -15.72365 -15.48112 -15.27929 -15.02606 -14.99985 -14.96369 -14.78291 -14.48562 -13.60329 -13.51519 -12.94893 -12.72977 -12.56668 -12.41509 -12.23121 -12.14497 -12.00111 -11.04188 -10.66164 -10.42752 -10.39186 -9.65278 -8.13629 -6.23809 0.08037 0.87932 1.06497 1.36272 1.45124 1.47176 1.57998 2.02891 2.09974 2.44675 2.52899 2.90705 3.11125 3.17518 3.63333 3.99205 4.14408 4.35646 4.74728 4.89186 4.94948 5.01436 5.47521 5.49778 5.66667 5.76317 5.94764 6.09931 6.22581 6.62192 6.84756 7.20757 7.45270 8.92270 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.029197 B = 0.004270 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.762121 B = 6555.366259 C = 7264.782329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.033 3.967 3 H 0.054 0.946 4 C -0.529 4.529 5 H 0.055 0.945 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 0.955 3.045 9 H -0.275 1.275 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.534 3.466 13 O -0.543 6.543 14 N -0.632 5.632 15 C 0.297 3.703 16 C -0.218 4.218 17 C 0.005 3.995 18 C 0.556 3.444 19 F -0.163 7.163 20 F -0.164 7.164 21 F -0.164 7.164 22 N -0.423 5.423 23 H 0.464 0.536 24 N -0.288 5.288 25 H 0.074 0.926 26 H 0.027 0.973 27 H 0.054 0.946 28 H 0.265 0.735 29 H 0.429 0.571 30 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.434 -4.166 17.603 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.012 3.988 3 H 0.072 0.928 4 C -0.567 4.567 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.201 1.201 10 H -0.203 1.203 11 H -0.202 1.202 12 C 0.323 3.677 13 O -0.417 6.417 14 N -0.283 5.283 15 C 0.042 3.958 16 C -0.250 4.250 17 C -0.126 4.126 18 C 0.499 3.501 19 F -0.144 7.144 20 F -0.145 7.145 21 F -0.145 7.145 22 N -0.139 5.139 23 H 0.315 0.685 24 N -0.121 5.121 25 H 0.093 0.907 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.268 0.732 30 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.287 -3.944 18.053 18.620 hybrid contribution 0.510 -0.664 -0.894 1.225 sum 2.797 -4.608 17.159 17.986 Atomic orbital electron populations 1.21633 0.94648 0.99917 1.02152 1.18840 0.95555 0.96376 0.88069 0.92823 1.21265 1.31855 1.12948 0.90644 0.92640 1.25540 0.95140 0.95653 1.01341 1.69937 1.37091 1.23431 1.24404 0.85604 0.78699 0.78459 0.79182 1.20120 1.20328 1.20205 1.21978 0.77931 0.83799 0.83953 1.90468 1.37543 1.27405 1.86334 1.43115 1.52152 1.31372 1.01668 1.19355 0.95858 0.93090 0.87521 1.21681 1.06260 1.00366 0.96670 1.20752 1.03107 0.96063 0.92713 1.16904 0.77516 0.80593 0.75088 1.93228 1.96413 1.96608 1.28190 1.93282 1.85237 1.47715 1.88275 1.93281 1.37077 1.95858 1.88296 1.45667 1.38972 1.19718 1.09502 0.68540 1.77423 1.21752 1.14234 0.98696 0.90692 0.95416 0.92744 0.92563 0.73204 0.81660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.33 8.87 71.98 0.64 -4.69 16 2 C 0.03 1.54 2.64 -12.29 -0.03 1.51 16 3 H 0.05 2.57 8.14 -2.39 -0.02 2.55 16 4 C -0.53 -28.79 8.37 25.60 0.21 -28.58 16 5 H 0.06 3.21 6.75 -2.91 -0.02 3.19 16 6 C 0.02 1.22 5.30 84.65 0.45 1.67 16 7 N -0.91 -48.92 11.32 21.45 0.24 -48.68 16 8 Si 0.95 43.24 29.54 68.60 2.03 45.27 16 9 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 C 0.53 22.76 7.12 87.65 0.62 23.38 16 13 O -0.54 -26.16 12.59 -3.05 -0.04 -26.20 16 14 N -0.63 -21.40 5.34 -307.51 -1.64 -23.04 16 15 C 0.30 9.69 8.11 133.32 1.08 10.77 16 16 C -0.22 -7.11 9.52 22.11 0.21 -6.90 16 17 C 0.00 0.12 6.47 41.38 0.27 0.39 16 18 C 0.56 11.81 3.49 71.23 0.25 12.06 16 19 F -0.16 -2.75 16.97 44.97 0.76 -1.99 16 20 F -0.16 -3.79 17.30 44.97 0.78 -3.01 16 21 F -0.16 -3.79 17.30 44.97 0.78 -3.01 16 22 N -0.42 -9.13 7.23 -48.04 -0.35 -9.48 16 23 H 0.46 6.21 8.72 -213.33 -1.86 4.35 16 24 N -0.29 -7.98 12.72 -54.45 -0.69 -8.68 16 25 H 0.07 3.56 6.07 -2.38 -0.01 3.55 16 26 H 0.03 1.17 8.14 -2.39 -0.02 1.16 16 27 H 0.05 1.83 7.56 -2.38 -0.02 1.81 16 28 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 29 H 0.43 12.01 8.24 -92.71 -0.76 11.24 16 30 H 0.17 6.22 5.92 -2.91 -0.02 6.20 16 Total: -1.00 -61.43 279.37 4.19 -57.25 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -1.38 Total: 11.96 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 3.70 Total: 9.60 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -2.44 Total: -89.87 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.04 Total: -26.20 kcal Atomic # 9 Polarization: -10.33 SS G_CDS: 2.32 Total: -8.01 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -61.43 4.19 -57.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333452800.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.723 kcal (2) G-P(sol) polarization free energy of solvation -61.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds